Wall clock time and date at job start Mon Mar 30 2020 02:45:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46901 * 110.99815 * 2 1 4 4 C 1.39203 * 111.00410 * 123.95876 * 2 1 3 5 5 N 1.32399 * 120.13446 * 295.51918 * 4 2 1 6 6 C 1.32453 * 119.99569 * 180.27692 * 5 4 2 7 7 C 1.37895 * 120.27820 * 359.72975 * 6 5 4 8 8 N 1.32448 * 120.27691 * 0.02562 * 7 6 5 9 9 C 1.32401 * 119.99959 * 359.97438 * 8 7 6 10 10 N 1.39202 * 120.13803 * 179.97438 * 9 8 7 11 11 C 1.46854 * 111.00070 * 35.95362 * 10 9 8 12 12 C 1.53034 * 109.52092 * 174.16394 * 11 10 9 13 13 C 1.53116 * 109.28278 * 59.17603 * 12 11 10 14 14 C 1.53116 * 109.16314 * 302.34494 * 13 12 11 15 15 H 1.08997 * 109.50172 * 297.71534 * 14 13 12 16 16 C 1.50699 * 109.50548 * 177.63175 * 14 13 12 17 17 H 1.08000 * 120.00288 * 240.08285 * 16 14 13 18 18 C 1.37877 * 119.99573 * 60.08045 * 16 14 13 19 19 N 1.31505 * 120.00221 * 359.97438 * 18 16 14 20 20 Si 1.86802 * 119.99666 * 180.02562 * 18 16 14 21 21 H 1.48496 * 109.47015 * 60.00079 * 20 18 16 22 22 H 1.48498 * 109.46916 * 180.02562 * 20 18 16 23 23 H 1.48493 * 109.47144 * 299.99938 * 20 18 16 24 24 C 1.46932 * 110.98634 * 271.72744 * 10 9 8 25 25 H 1.09000 * 109.46969 * 296.04104 * 1 2 3 26 26 H 1.08993 * 109.47547 * 56.04601 * 1 2 3 27 27 H 1.09005 * 109.46950 * 176.04352 * 1 2 3 28 28 H 1.09006 * 109.46848 * 183.75857 * 3 2 1 29 29 H 1.08997 * 109.47270 * 303.75607 * 3 2 1 30 30 H 1.09001 * 109.47135 * 63.76058 * 3 2 1 31 31 H 1.07998 * 119.85685 * 179.70986 * 6 5 4 32 32 H 1.08000 * 119.86118 * 180.02562 * 7 6 5 33 33 H 1.08995 * 109.45814 * 54.14239 * 11 10 9 34 34 H 1.08998 * 109.45972 * 294.17757 * 11 10 9 35 35 H 1.09009 * 109.49969 * 299.23306 * 12 11 10 36 36 H 1.09002 * 109.50186 * 179.12252 * 12 11 10 37 37 H 1.09000 * 109.52233 * 182.43698 * 13 12 11 38 38 H 1.09005 * 109.57060 * 62.28464 * 13 12 11 39 39 H 0.97010 * 120.00430 * 179.97438 * 19 18 16 40 40 H 1.08995 * 109.45476 * 65.83787 * 24 10 9 41 41 H 1.09005 * 109.51356 * 305.84037 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 1.9679 -0.7259 1.0779 5 7 1.7456 -0.3142 2.3165 6 6 2.2263 -1.0041 3.3399 7 6 2.9543 -2.1548 3.1221 8 7 3.1790 -2.5792 1.8878 9 6 2.7037 -1.8982 0.8567 10 7 2.9386 -2.3414 -0.4418 11 6 2.9196 -3.8083 -0.5088 12 6 3.0354 -4.2551 -1.9679 13 6 4.3403 -3.7153 -2.5599 14 6 4.3561 -2.1894 -2.4339 15 1 3.5315 -1.7683 -3.0090 16 6 5.6624 -1.6545 -2.9615 17 1 6.3176 -1.0927 -2.3122 18 6 6.0212 -1.8823 -4.2731 19 7 5.2237 -2.5668 -5.0636 20 14 7.6408 -1.2198 -4.9269 21 1 8.7633 -1.7946 -4.1429 22 1 7.7895 -1.5975 -6.3554 23 1 7.6567 0.2598 -4.8025 24 6 4.2026 -1.8017 -0.9614 25 1 -0.3633 0.4512 0.9233 26 1 -0.3634 0.5739 -0.8524 27 1 -0.3633 -1.0253 -0.0709 28 1 3.0829 1.3431 -0.0674 29 1 1.5925 1.9153 -0.8544 30 1 1.7014 1.8735 0.9218 31 1 2.0476 -0.6636 4.3491 32 1 3.3427 -2.7123 3.9616 33 1 1.9847 -4.1788 -0.0885 34 1 3.7578 -4.2087 0.0613 35 1 2.1900 -3.8664 -2.5357 36 1 3.0370 -5.3440 -2.0160 37 1 4.4062 -3.9947 -3.6114 38 1 5.1881 -4.1344 -2.0178 39 1 5.4759 -2.7268 -5.9866 40 1 5.0348 -2.2116 -0.3893 41 1 4.1995 -0.7154 -0.8704 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166740243.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:17 Heat of formation + Delta-G solvation = 71.766030 kcal Electronic energy + Delta-G solvation = -22313.933671 eV Core-core repulsion = 19229.438751 eV Total energy + Delta-G solvation = -3084.494920 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.22067 -38.12140 -37.12303 -34.34766 -32.93988 -31.73532 -29.91951 -29.27604 -27.48014 -25.58511 -24.87651 -24.47387 -22.07211 -21.91080 -21.23320 -18.69040 -17.57119 -17.23281 -16.83568 -15.85049 -15.44882 -14.82482 -14.54617 -14.17334 -14.14637 -13.77044 -13.59668 -13.14502 -12.69372 -12.46178 -12.34259 -12.19929 -11.98643 -11.75290 -11.57906 -11.45775 -10.97772 -10.91313 -10.72736 -10.67258 -10.10286 -9.84483 -9.62883 -9.40829 -9.12233 -8.90440 -8.71743 -8.35070 -8.26942 -7.80293 -5.95449 -4.01554 0.87464 1.20826 3.34039 3.38687 3.41054 3.59800 3.70576 4.08788 4.36670 4.46950 4.50672 4.91711 5.14843 5.34296 5.35081 5.44591 5.45878 5.62481 5.68867 5.77728 5.87362 5.95388 6.01024 6.04080 6.11755 6.27906 6.41497 6.51295 6.71031 6.75271 6.92336 6.94873 7.11600 7.21211 7.35011 7.42190 7.54812 7.76222 7.79420 7.98775 8.10947 8.18300 8.47958 9.01333 9.62333 11.10529 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.020705 B = 0.005445 C = 0.005093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1352.021293 B = 5140.935192 C = 5495.940090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.466 5.466 3 C 0.030 3.970 4 C 0.259 3.741 5 N -0.463 5.463 6 C 0.028 3.972 7 C 0.059 3.941 8 N -0.472 5.472 9 C 0.302 3.698 10 N -0.461 5.461 11 C 0.068 3.932 12 C -0.117 4.117 13 C -0.112 4.112 14 C 0.059 3.941 15 H 0.040 0.960 16 C -0.515 4.515 17 H 0.052 0.948 18 C 0.065 3.935 19 N -0.887 5.887 20 Si 0.890 3.110 21 H -0.278 1.278 22 H -0.287 1.287 23 H -0.278 1.278 24 C 0.083 3.917 25 H 0.033 0.967 26 H 0.076 0.924 27 H 0.067 0.933 28 H 0.068 0.932 29 H 0.077 0.923 30 H 0.035 0.965 31 H 0.163 0.837 32 H 0.164 0.836 33 H 0.054 0.946 34 H 0.044 0.956 35 H 0.062 0.938 36 H 0.050 0.950 37 H 0.093 0.907 38 H 0.031 0.969 39 H 0.260 0.740 40 H 0.027 0.973 41 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.906 2.195 13.195 15.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 N -0.188 5.188 3 C -0.117 4.117 4 C 0.023 3.977 5 N -0.181 5.181 6 C -0.132 4.132 7 C -0.101 4.101 8 N -0.192 5.192 9 C 0.066 3.934 10 N -0.182 5.182 11 C -0.060 4.060 12 C -0.155 4.155 13 C -0.150 4.150 14 C 0.040 3.960 15 H 0.058 0.942 16 C -0.553 4.553 17 H 0.070 0.930 18 C -0.136 4.136 19 N -0.526 5.526 20 Si 0.718 3.282 21 H -0.204 1.204 22 H -0.213 1.213 23 H -0.203 1.203 24 C -0.041 4.041 25 H 0.052 0.948 26 H 0.095 0.905 27 H 0.085 0.915 28 H 0.087 0.913 29 H 0.096 0.904 30 H 0.054 0.946 31 H 0.180 0.820 32 H 0.181 0.819 33 H 0.073 0.927 34 H 0.062 0.938 35 H 0.081 0.919 36 H 0.069 0.931 37 H 0.111 0.889 38 H 0.050 0.950 39 H 0.070 0.930 40 H 0.045 0.955 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -8.126 2.069 12.232 14.830 hybrid contribution 1.222 0.406 0.980 1.618 sum -6.904 2.475 13.212 15.111 Atomic orbital electron populations 1.22354 0.85359 1.02578 1.00914 1.60041 1.08761 1.14384 1.35648 1.22413 1.01071 0.87186 1.01042 1.20494 0.95709 0.93833 0.87682 1.68403 1.18438 1.31392 0.99874 1.23326 0.97673 0.93668 0.98496 1.23511 0.96432 0.95259 0.94895 1.68699 1.17618 1.33117 0.99728 1.20970 0.91521 0.90528 0.90415 1.59970 1.36377 1.10628 1.11258 1.22025 0.99981 0.85589 0.98377 1.21699 1.01273 0.98563 0.93946 1.21682 0.92467 0.98296 1.02565 1.18665 0.97273 0.92309 0.87761 0.94195 1.21050 1.04126 1.34315 0.95855 0.92974 1.24894 0.96786 0.95108 0.96819 1.69874 1.36511 1.39851 1.06321 0.86697 0.84272 0.79414 0.77827 1.20406 1.21293 1.20324 1.22395 0.84118 0.98334 0.99236 0.94844 0.90481 0.91451 0.91346 0.90385 0.94625 0.81992 0.81863 0.92712 0.93815 0.91918 0.93133 0.88884 0.94983 0.92978 0.95481 0.91978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.46 9.47 60.06 0.57 1.03 16 2 N -0.47 -7.42 4.71 -188.57 -0.89 -8.31 16 3 C 0.03 0.42 9.44 60.07 0.57 0.99 16 4 C 0.26 4.30 5.38 -154.44 -0.83 3.47 16 5 N -0.46 -6.88 9.73 -12.06 -0.12 -6.99 16 6 C 0.03 0.34 11.20 -17.41 -0.19 0.14 16 7 C 0.06 0.74 11.20 -17.41 -0.20 0.55 16 8 N -0.47 -7.87 9.41 -12.06 -0.11 -7.99 16 9 C 0.30 5.44 5.62 -154.44 -0.87 4.57 16 10 N -0.46 -9.09 4.35 -172.76 -0.75 -9.85 16 11 C 0.07 1.27 4.93 -3.83 -0.02 1.25 16 12 C -0.12 -2.31 6.09 -26.65 -0.16 -2.47 16 13 C -0.11 -2.65 5.03 -26.61 -0.13 -2.78 16 14 C 0.06 1.47 2.26 -91.69 -0.21 1.26 16 15 H 0.04 1.10 8.14 -51.93 -0.42 0.68 16 16 C -0.51 -14.05 8.56 -34.44 -0.29 -14.34 16 17 H 0.05 1.41 7.74 -52.49 -0.41 1.00 16 18 C 0.07 1.80 5.30 -17.82 -0.09 1.70 16 19 N -0.89 -25.06 11.35 55.43 0.63 -24.43 16 20 Si 0.89 21.19 29.54 -169.99 -5.02 16.17 16 21 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 22 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 23 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 24 C 0.08 1.84 4.63 -3.78 -0.02 1.82 16 25 H 0.03 0.42 7.95 -51.93 -0.41 0.01 16 26 H 0.08 0.88 8.12 -51.93 -0.42 0.46 16 27 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 29 H 0.08 0.96 8.12 -51.93 -0.42 0.54 16 30 H 0.04 0.47 7.85 -51.93 -0.41 0.06 16 31 H 0.16 1.32 8.06 -52.49 -0.42 0.89 16 32 H 0.16 1.44 8.06 -52.49 -0.42 1.01 16 33 H 0.05 0.96 8.10 -51.93 -0.42 0.54 16 34 H 0.04 0.85 7.82 -51.93 -0.41 0.44 16 35 H 0.06 1.27 8.14 -51.92 -0.42 0.85 16 36 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.09 2.44 6.15 -51.93 -0.32 2.12 16 38 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 40 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.06 1.38 8.11 -51.93 -0.42 0.96 16 LS Contribution 330.93 15.07 4.99 4.99 Total: -1.00 -29.82 330.93 -9.74 -39.55 By element: Atomic # 1 Polarization: 6.23 SS G_CDS: -6.58 Total: -0.34 kcal Atomic # 6 Polarization: -0.92 SS G_CDS: -1.88 Total: -2.80 kcal Atomic # 7 Polarization: -56.32 SS G_CDS: -1.24 Total: -57.56 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -29.82 -9.74 -39.55 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166740243.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.319 kcal (2) G-P(sol) polarization free energy of solvation -29.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.553 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds