Wall clock time and date at job start Mon Mar 30 2020 02:45:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46901 * 110.99815 * 2 1 4 4 C 1.39203 * 111.00410 * 123.95876 * 2 1 3 5 5 N 1.32399 * 120.13446 * 295.51918 * 4 2 1 6 6 C 1.32453 * 119.99569 * 180.27692 * 5 4 2 7 7 C 1.37895 * 120.27820 * 359.72975 * 6 5 4 8 8 N 1.32448 * 120.27691 * 0.02562 * 7 6 5 9 9 C 1.32401 * 119.99959 * 359.97438 * 8 7 6 10 10 N 1.39202 * 120.13803 * 179.97438 * 9 8 7 11 11 C 1.46854 * 111.00070 * 35.95362 * 10 9 8 12 12 C 1.53034 * 109.52092 * 174.16394 * 11 10 9 13 13 C 1.53116 * 109.28278 * 59.17603 * 12 11 10 14 14 C 1.53116 * 109.16314 * 302.34494 * 13 12 11 15 15 H 1.08997 * 109.50172 * 297.71534 * 14 13 12 16 16 C 1.50699 * 109.50548 * 177.63175 * 14 13 12 17 17 H 1.08000 * 120.00288 * 240.08285 * 16 14 13 18 18 C 1.37877 * 119.99573 * 60.08045 * 16 14 13 19 19 N 1.31505 * 120.00221 * 359.97438 * 18 16 14 20 20 Si 1.86802 * 119.99666 * 180.02562 * 18 16 14 21 21 H 1.48496 * 109.47015 * 60.00079 * 20 18 16 22 22 H 1.48498 * 109.46916 * 180.02562 * 20 18 16 23 23 H 1.48493 * 109.47144 * 299.99938 * 20 18 16 24 24 C 1.46932 * 110.98634 * 271.72744 * 10 9 8 25 25 H 1.09000 * 109.46969 * 296.04104 * 1 2 3 26 26 H 1.08993 * 109.47547 * 56.04601 * 1 2 3 27 27 H 1.09005 * 109.46950 * 176.04352 * 1 2 3 28 28 H 1.09006 * 109.46848 * 183.75857 * 3 2 1 29 29 H 1.08997 * 109.47270 * 303.75607 * 3 2 1 30 30 H 1.09001 * 109.47135 * 63.76058 * 3 2 1 31 31 H 1.07998 * 119.85685 * 179.70986 * 6 5 4 32 32 H 1.08000 * 119.86118 * 180.02562 * 7 6 5 33 33 H 1.08995 * 109.45814 * 54.14239 * 11 10 9 34 34 H 1.08998 * 109.45972 * 294.17757 * 11 10 9 35 35 H 1.09009 * 109.49969 * 299.23306 * 12 11 10 36 36 H 1.09002 * 109.50186 * 179.12252 * 12 11 10 37 37 H 1.09000 * 109.52233 * 182.43698 * 13 12 11 38 38 H 1.09005 * 109.57060 * 62.28464 * 13 12 11 39 39 H 0.97010 * 120.00430 * 179.97438 * 19 18 16 40 40 H 1.08995 * 109.45476 * 65.83787 * 24 10 9 41 41 H 1.09005 * 109.51356 * 305.84037 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 1.9679 -0.7259 1.0779 5 7 1.7456 -0.3142 2.3165 6 6 2.2263 -1.0041 3.3399 7 6 2.9543 -2.1548 3.1221 8 7 3.1790 -2.5792 1.8878 9 6 2.7037 -1.8982 0.8567 10 7 2.9386 -2.3414 -0.4418 11 6 2.9196 -3.8083 -0.5088 12 6 3.0354 -4.2551 -1.9679 13 6 4.3403 -3.7153 -2.5599 14 6 4.3561 -2.1894 -2.4339 15 1 3.5315 -1.7683 -3.0090 16 6 5.6624 -1.6545 -2.9615 17 1 6.3176 -1.0927 -2.3122 18 6 6.0212 -1.8823 -4.2731 19 7 5.2237 -2.5668 -5.0636 20 14 7.6408 -1.2198 -4.9269 21 1 8.7633 -1.7946 -4.1429 22 1 7.7895 -1.5975 -6.3554 23 1 7.6567 0.2598 -4.8025 24 6 4.2026 -1.8017 -0.9614 25 1 -0.3633 0.4512 0.9233 26 1 -0.3634 0.5739 -0.8524 27 1 -0.3633 -1.0253 -0.0709 28 1 3.0829 1.3431 -0.0674 29 1 1.5925 1.9153 -0.8544 30 1 1.7014 1.8735 0.9218 31 1 2.0476 -0.6636 4.3491 32 1 3.3427 -2.7123 3.9616 33 1 1.9847 -4.1788 -0.0885 34 1 3.7578 -4.2087 0.0613 35 1 2.1900 -3.8664 -2.5357 36 1 3.0370 -5.3440 -2.0160 37 1 4.4062 -3.9947 -3.6114 38 1 5.1881 -4.1344 -2.0178 39 1 5.4759 -2.7268 -5.9866 40 1 5.0348 -2.2116 -0.3893 41 1 4.1995 -0.7154 -0.8704 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166740243.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:16 Heat of formation + Delta-G solvation = 52.687505 kcal Electronic energy + Delta-G solvation = -22314.760977 eV Core-core repulsion = 19229.438751 eV Total energy + Delta-G solvation = -3085.322227 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.39633 -39.69211 -38.25096 -35.97522 -34.47998 -33.31009 -31.75426 -30.57140 -28.55471 -27.03435 -26.55313 -25.88191 -23.59278 -23.15995 -22.83667 -20.44760 -18.82761 -18.77481 -18.06651 -17.57536 -16.74903 -16.44829 -15.90851 -15.62434 -15.32360 -15.17265 -14.91097 -14.63166 -14.43363 -14.15459 -14.02520 -13.40968 -13.24148 -13.06087 -12.83985 -12.71736 -12.69709 -12.63889 -12.54855 -12.13243 -11.88012 -11.71636 -11.44930 -11.08568 -10.73463 -10.50797 -10.36119 -10.16452 -9.47533 -9.23343 -8.06065 -6.20047 -0.23932 0.06808 1.43209 1.44251 1.51913 2.38590 2.48629 2.60425 2.82928 3.21072 3.28744 3.50182 3.73086 4.11785 4.20839 4.27365 4.32048 4.35860 4.38724 4.41660 4.55432 4.59038 4.65403 4.70095 4.85705 4.87074 4.93630 4.95823 5.04771 5.09701 5.17750 5.36609 5.50469 5.64282 5.78893 5.88072 6.00658 6.05223 6.16306 6.28896 6.40527 6.43295 6.82143 6.89723 7.47150 8.98604 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.020705 B = 0.005445 C = 0.005093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1352.021293 B = 5140.935192 C = 5495.940090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 N -0.491 5.491 3 C 0.036 3.964 4 C 0.250 3.750 5 N -0.473 5.473 6 C 0.048 3.952 7 C 0.062 3.938 8 N -0.492 5.492 9 C 0.265 3.735 10 N -0.467 5.467 11 C 0.077 3.923 12 C -0.107 4.107 13 C -0.104 4.104 14 C 0.061 3.939 15 H 0.005 0.995 16 C -0.537 4.537 17 H 0.047 0.953 18 C 0.020 3.980 19 N -0.912 5.912 20 Si 0.952 3.048 21 H -0.273 1.273 22 H -0.282 1.282 23 H -0.272 1.272 24 C 0.106 3.894 25 H 0.040 0.960 26 H 0.091 0.909 27 H 0.058 0.942 28 H 0.048 0.952 29 H 0.091 0.909 30 H 0.044 0.956 31 H 0.211 0.789 32 H 0.207 0.793 33 H 0.072 0.928 34 H 0.038 0.962 35 H 0.055 0.945 36 H 0.075 0.925 37 H 0.064 0.936 38 H 0.022 0.978 39 H 0.261 0.739 40 H 0.012 0.988 41 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.224 2.449 15.539 17.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 N -0.215 5.215 3 C -0.111 4.111 4 C 0.016 3.984 5 N -0.191 5.191 6 C -0.113 4.113 7 C -0.099 4.099 8 N -0.211 5.211 9 C 0.031 3.969 10 N -0.189 5.189 11 C -0.050 4.050 12 C -0.145 4.145 13 C -0.142 4.142 14 C 0.042 3.958 15 H 0.023 0.977 16 C -0.576 4.576 17 H 0.065 0.935 18 C -0.179 4.179 19 N -0.551 5.551 20 Si 0.778 3.222 21 H -0.199 1.199 22 H -0.207 1.207 23 H -0.197 1.197 24 C -0.019 4.019 25 H 0.059 0.941 26 H 0.109 0.891 27 H 0.077 0.923 28 H 0.067 0.933 29 H 0.109 0.891 30 H 0.063 0.937 31 H 0.227 0.773 32 H 0.224 0.776 33 H 0.091 0.909 34 H 0.056 0.944 35 H 0.074 0.926 36 H 0.094 0.906 37 H 0.083 0.917 38 H 0.041 0.959 39 H 0.071 0.929 40 H 0.031 0.969 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -8.466 2.334 14.553 16.997 hybrid contribution 1.290 0.344 0.449 1.408 sum -7.176 2.678 15.002 16.844 Atomic orbital electron populations 1.22341 0.83987 1.02396 1.01884 1.59992 1.10134 1.15072 1.36281 1.22361 0.99844 0.86806 1.02071 1.20453 0.95891 0.93529 0.88538 1.68502 1.18986 1.31910 0.99727 1.24171 0.94902 0.92443 0.99738 1.24261 0.95545 0.95612 0.94452 1.68612 1.18037 1.33549 1.00949 1.20847 0.93974 0.92195 0.89870 1.59805 1.34761 1.10793 1.13506 1.21925 1.00545 0.85397 0.97174 1.21591 0.98528 0.99929 0.94481 1.21479 0.94350 0.97451 1.00907 1.18525 0.95030 0.92997 0.89229 0.97699 1.21385 1.05116 1.34686 0.96415 0.93451 1.25639 1.00013 0.95286 0.97008 1.70010 1.38029 1.40531 1.06485 0.85711 0.80295 0.78928 0.77303 1.19856 1.20694 1.19740 1.21914 0.85378 0.97554 0.97090 0.94123 0.89084 0.92261 0.93288 0.89061 0.93735 0.77263 0.77600 0.90938 0.94401 0.92637 0.90634 0.91718 0.95867 0.92934 0.96932 0.93042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.04 9.47 127.69 1.21 2.25 16 2 N -0.49 -15.57 4.71 -750.51 -3.54 -19.10 16 3 C 0.04 1.01 9.44 127.69 1.21 2.21 16 4 C 0.25 8.07 5.38 133.25 0.72 8.79 16 5 N -0.47 -12.89 9.73 -192.06 -1.87 -14.76 16 6 C 0.05 0.97 11.20 84.52 0.95 1.92 16 7 C 0.06 1.34 11.20 84.52 0.95 2.29 16 8 N -0.49 -15.56 9.41 -192.06 -1.81 -17.37 16 9 C 0.26 9.41 5.62 133.25 0.75 10.16 16 10 N -0.47 -18.72 4.35 -700.49 -3.05 -21.77 16 11 C 0.08 2.88 4.93 86.32 0.43 3.30 16 12 C -0.11 -4.29 6.09 30.64 0.19 -4.10 16 13 C -0.10 -5.08 5.03 30.67 0.15 -4.93 16 14 C 0.06 3.19 2.26 -11.49 -0.03 3.17 16 15 H 0.00 0.28 8.14 -2.39 -0.02 0.26 16 16 C -0.54 -30.37 8.56 25.60 0.22 -30.15 16 17 H 0.05 2.65 7.74 -2.91 -0.02 2.62 16 18 C 0.02 1.11 5.30 84.66 0.45 1.56 16 19 N -0.91 -52.96 11.35 21.45 0.24 -52.72 16 20 Si 0.95 44.03 29.54 68.60 2.03 46.06 16 21 H -0.27 -12.34 7.11 99.48 0.71 -11.64 16 22 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 23 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 24 C 0.11 4.86 4.63 86.31 0.40 5.26 16 25 H 0.04 0.96 7.95 -2.39 -0.02 0.94 16 26 H 0.09 2.01 8.12 -2.39 -0.02 1.99 16 27 H 0.06 1.58 8.14 -2.38 -0.02 1.56 16 28 H 0.05 1.52 8.14 -2.38 -0.02 1.50 16 29 H 0.09 2.22 8.12 -2.39 -0.02 2.20 16 30 H 0.04 1.13 7.85 -2.39 -0.02 1.11 16 31 H 0.21 2.14 8.06 -2.91 -0.02 2.12 16 32 H 0.21 2.56 8.06 -2.91 -0.02 2.53 16 33 H 0.07 2.46 8.10 -2.39 -0.02 2.44 16 34 H 0.04 1.45 7.82 -2.39 -0.02 1.44 16 35 H 0.05 2.28 8.14 -2.38 -0.02 2.27 16 36 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 37 H 0.06 3.53 6.15 -2.39 -0.01 3.52 16 38 H 0.02 1.13 8.14 -2.38 -0.02 1.11 16 39 H 0.26 14.45 8.31 -92.70 -0.77 13.68 16 40 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 41 H 0.05 2.41 8.11 -2.38 -0.02 2.39 16 Total: -1.00 -66.86 330.93 0.59 -66.27 By element: Atomic # 1 Polarization: 10.66 SS G_CDS: 1.00 Total: 11.65 kcal Atomic # 6 Polarization: -5.85 SS G_CDS: 7.58 Total: 1.73 kcal Atomic # 7 Polarization: -115.70 SS G_CDS: -10.02 Total: -125.72 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.06 kcal Total: -66.86 0.59 -66.27 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166740243.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.962 kcal (2) G-P(sol) polarization free energy of solvation -66.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.274 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds