Wall clock time and date at job start Mon Mar 30 2020 01:34:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42893 * 114.00324 * 2 1 4 4 C 1.50704 * 109.47530 * 180.02562 * 3 2 1 5 5 C 1.38884 * 120.74115 * 269.97950 * 4 3 2 6 6 C 1.38028 * 119.32505 * 180.02562 * 5 4 3 7 7 N 1.31975 * 120.85513 * 359.71854 * 6 5 4 8 8 C 1.32397 * 121.62220 * 0.56868 * 7 6 5 9 9 N 1.39007 * 119.70558 * 179.70634 * 8 7 6 10 10 C 1.46847 * 110.99885 * 123.68349 * 9 8 7 11 11 C 1.53028 * 109.52289 * 174.16447 * 10 9 8 12 12 C 1.53115 * 109.28362 * 59.17763 * 11 10 9 13 13 C 1.53123 * 109.15886 * 302.34747 * 12 11 10 14 14 H 1.09002 * 109.50371 * 297.70988 * 13 12 11 15 15 C 1.50698 * 109.50354 * 177.63232 * 13 12 11 16 16 H 1.08003 * 120.00069 * 240.07770 * 15 13 12 17 17 C 1.37878 * 119.99970 * 60.07355 * 15 13 12 18 18 N 1.31514 * 119.99929 * 0.02562 * 17 15 13 19 19 Si 1.86796 * 119.99930 * 179.97438 * 17 15 13 20 20 H 1.48497 * 109.47247 * 60.00708 * 19 17 15 21 21 H 1.48501 * 109.47092 * 180.02562 * 19 17 15 22 22 H 1.48504 * 109.47485 * 300.00577 * 19 17 15 23 23 C 1.46933 * 110.98276 * 359.45549 * 9 8 7 24 24 C 1.38292 * 120.74795 * 89.99628 * 4 3 2 25 25 H 1.09007 * 109.47212 * 299.99944 * 1 2 3 26 26 H 1.09003 * 109.47180 * 59.99925 * 1 2 3 27 27 H 1.09004 * 109.47266 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47122 * 59.99810 * 3 2 1 29 29 H 1.09006 * 109.47139 * 300.00024 * 3 2 1 30 30 H 1.07993 * 120.33983 * 359.97438 * 5 4 3 31 31 H 1.08000 * 119.56896 * 180.02562 * 6 5 4 32 32 H 1.09001 * 109.46124 * 54.14140 * 10 9 8 33 33 H 1.09004 * 109.45292 * 294.17477 * 10 9 8 34 34 H 1.09005 * 109.50095 * 299.23443 * 11 10 9 35 35 H 1.09000 * 109.50556 * 179.12336 * 11 10 9 36 36 H 1.08994 * 109.52606 * 182.44091 * 12 11 10 37 37 H 1.09000 * 109.57447 * 62.27763 * 12 11 10 38 38 H 0.97004 * 119.99788 * 179.97438 * 18 17 15 39 39 H 1.09000 * 109.45389 * 65.84035 * 23 9 8 40 40 H 1.09002 * 109.51493 * 305.83555 * 23 9 8 41 41 H 1.08001 * 120.45357 * 359.96007 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1864 -0.0006 5 6 4.2208 1.1305 1.1928 6 6 5.5964 1.0221 1.1581 7 7 6.2421 0.9657 0.0085 8 6 5.6034 1.0215 -1.1499 9 7 6.3240 0.9647 -2.3373 10 6 5.8555 -0.1391 -3.1849 11 6 6.5676 -0.0824 -4.5382 12 6 8.0793 -0.1888 -4.3190 13 6 8.5338 0.9437 -3.3940 14 1 8.3342 1.9041 -3.8694 15 6 10.0110 0.8123 -3.1262 16 1 10.3669 0.6819 -2.1149 17 6 10.9081 0.8586 -4.1722 18 7 10.4746 1.0178 -5.4036 19 14 12.7391 0.6965 -3.8401 20 1 13.0108 -0.6118 -3.1923 21 1 13.4839 0.7785 -5.1223 22 1 13.1785 1.7944 -2.9418 23 6 7.7655 0.8577 -2.0733 24 6 4.2169 1.1307 -1.1895 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.6886 1.8463 0.8900 29 1 1.6886 1.8463 -0.8900 30 1 3.7006 1.1724 2.1382 31 1 6.1510 0.9780 2.0837 32 1 4.7798 -0.0492 -3.3364 33 1 6.0755 -1.0892 -2.6982 34 1 6.3370 0.8618 -5.0316 35 1 6.2311 -0.9109 -5.1615 36 1 8.5930 -0.1054 -5.2766 37 1 8.3152 -1.1496 -3.8615 38 1 11.1058 1.0507 -6.1395 39 1 7.9765 -0.0972 -1.5919 40 1 8.0771 1.6713 -1.4182 41 1 3.6978 1.1712 -2.1357 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166741003.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:25 Heat of formation + Delta-G solvation = -4.923410 kcal Electronic energy + Delta-G solvation = -21321.968664 eV Core-core repulsion = 18201.855489 eV Total energy + Delta-G solvation = -3120.113175 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.158 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.46209 -38.33720 -37.53200 -33.96915 -33.10174 -31.86566 -30.05274 -29.13299 -27.90158 -25.88024 -24.97875 -23.85305 -22.90476 -21.18305 -20.82876 -18.66060 -17.22498 -16.66244 -16.61980 -16.15737 -15.52103 -15.44798 -15.11445 -14.43517 -14.40249 -14.06596 -13.68899 -13.15989 -12.68792 -12.66363 -12.57977 -12.35356 -12.24456 -11.79182 -11.69077 -11.61427 -10.90389 -10.76903 -10.67126 -10.15243 -9.99530 -9.86811 -9.77921 -9.54894 -9.34324 -9.22522 -9.06111 -8.66664 -8.27053 -7.62228 -5.95253 -4.00713 1.30632 1.37576 3.35753 3.39699 3.42910 3.50738 3.98999 4.17835 4.48470 4.61839 4.67857 4.95524 5.00061 5.06857 5.09996 5.26685 5.33184 5.34913 5.37043 5.46153 5.61775 5.68632 5.83609 5.95657 5.99004 6.19598 6.37568 6.45853 6.52301 6.61850 6.65353 6.80480 6.83868 6.99058 7.11027 7.32061 7.46240 7.77110 7.79057 8.07475 8.15117 8.33275 8.50798 9.02710 9.63359 11.11117 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.033783 B = 0.003833 C = 0.003522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 828.621518 B = 7302.733043 C = 7947.225886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.384 6.384 3 C 0.105 3.895 4 C -0.032 4.032 5 C -0.199 4.199 6 C 0.126 3.874 7 N -0.512 5.512 8 C 0.326 3.674 9 N -0.477 5.477 10 C 0.068 3.932 11 C -0.119 4.119 12 C -0.114 4.114 13 C 0.051 3.949 14 H 0.034 0.966 15 C -0.512 4.512 16 H 0.055 0.945 17 C 0.063 3.937 18 N -0.890 5.890 19 Si 0.892 3.108 20 H -0.278 1.278 21 H -0.288 1.288 22 H -0.277 1.277 23 C 0.080 3.920 24 C -0.174 4.174 25 H 0.041 0.959 26 H 0.042 0.958 27 H 0.087 0.913 28 H 0.061 0.939 29 H 0.062 0.938 30 H 0.128 0.872 31 H 0.153 0.847 32 H 0.067 0.933 33 H 0.038 0.962 34 H 0.064 0.936 35 H 0.054 0.946 36 H 0.094 0.906 37 H 0.033 0.967 38 H 0.260 0.740 39 H 0.037 0.963 40 H 0.071 0.929 41 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.265 -0.701 9.327 20.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.302 6.302 3 C 0.028 3.972 4 C -0.040 4.040 5 C -0.221 4.221 6 C -0.032 4.032 7 N -0.227 5.227 8 C 0.093 3.907 9 N -0.193 5.193 10 C -0.057 4.057 11 C -0.157 4.157 12 C -0.152 4.152 13 C 0.032 3.968 14 H 0.052 0.948 15 C -0.551 4.551 16 H 0.073 0.927 17 C -0.138 4.138 18 N -0.529 5.529 19 Si 0.720 3.280 20 H -0.203 1.203 21 H -0.214 1.214 22 H -0.203 1.203 23 C -0.046 4.046 24 C -0.197 4.197 25 H 0.060 0.940 26 H 0.061 0.939 27 H 0.105 0.895 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.146 0.854 31 H 0.171 0.829 32 H 0.085 0.915 33 H 0.057 0.943 34 H 0.082 0.918 35 H 0.073 0.927 36 H 0.112 0.888 37 H 0.052 0.948 38 H 0.070 0.930 39 H 0.055 0.945 40 H 0.090 0.910 41 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -17.212 -0.512 8.777 19.328 hybrid contribution -0.012 -0.316 0.580 0.660 sum -17.224 -0.828 9.357 19.619 Atomic orbital electron populations 1.22770 0.80889 1.02921 1.00024 1.87984 1.19662 1.27175 1.95415 1.21323 0.89439 0.85237 1.01176 1.19701 0.94075 0.97007 0.93198 1.21755 0.95595 1.06663 0.98040 1.22533 0.91410 0.93626 0.95660 1.67778 1.40981 1.15963 0.97978 1.20142 0.89806 0.91502 0.89201 1.59162 1.07824 1.41772 1.10523 1.22209 0.98763 0.90176 0.94566 1.21732 0.98878 1.01145 0.93918 1.21707 0.90876 0.98641 1.03954 1.18760 0.93270 0.95458 0.89339 0.94830 1.21082 0.90863 1.49797 0.93336 0.92655 1.24927 0.98693 0.95105 0.95116 1.69877 1.34210 1.50191 0.98633 0.86661 0.85347 0.78655 0.77341 1.20335 1.21360 1.20281 1.22291 0.81354 1.00523 1.00408 1.21435 0.93571 1.06072 0.98669 0.94031 0.93909 0.89483 0.92080 0.92026 0.85385 0.82939 0.91456 0.94331 0.91762 0.92704 0.88763 0.94819 0.93015 0.94488 0.91012 0.84878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 11.01 101.05 1.11 1.34 16 2 O -0.38 -4.36 10.69 -35.23 -0.38 -4.74 16 3 C 0.10 1.07 6.11 36.01 0.22 1.29 16 4 C -0.03 -0.42 5.54 -104.36 -0.58 -1.00 16 5 C -0.20 -2.50 9.81 -39.42 -0.39 -2.89 16 6 C 0.13 1.80 11.17 -17.57 -0.20 1.61 16 7 N -0.51 -9.33 8.69 -12.43 -0.11 -9.44 16 8 C 0.33 5.94 6.40 -155.02 -0.99 4.95 16 9 N -0.48 -9.50 4.68 -173.16 -0.81 -10.31 16 10 C 0.07 1.23 5.25 -3.84 -0.02 1.21 16 11 C -0.12 -2.28 6.09 -26.66 -0.16 -2.45 16 12 C -0.11 -2.69 5.03 -26.61 -0.13 -2.82 16 13 C 0.05 1.29 2.26 -91.69 -0.21 1.08 16 14 H 0.03 0.94 8.14 -51.93 -0.42 0.52 16 15 C -0.51 -14.29 8.56 -34.44 -0.29 -14.59 16 16 H 0.06 1.54 7.74 -52.48 -0.41 1.13 16 17 C 0.06 1.75 5.30 -17.82 -0.09 1.66 16 18 N -0.89 -25.47 11.36 55.43 0.63 -24.85 16 19 Si 0.89 21.54 29.54 -169.99 -5.02 16.52 16 20 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 21 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 22 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 23 C 0.08 1.81 3.88 -3.79 -0.01 1.80 16 24 C -0.17 -2.66 8.88 -39.23 -0.35 -3.01 16 25 H 0.04 0.25 8.14 -51.93 -0.42 -0.18 16 26 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 27 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.06 0.50 8.10 -51.93 -0.42 0.08 16 29 H 0.06 0.56 8.10 -51.93 -0.42 0.14 16 30 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 31 H 0.15 1.72 8.06 -52.49 -0.42 1.30 16 32 H 0.07 1.04 6.68 -51.93 -0.35 0.69 16 33 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 35 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.09 2.47 6.15 -51.93 -0.32 2.15 16 37 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 39 H 0.04 0.87 8.11 -51.93 -0.42 0.45 16 40 H 0.07 1.70 7.72 -51.93 -0.40 1.30 16 41 H 0.13 1.85 7.16 -52.49 -0.38 1.47 16 LS Contribution 330.90 15.07 4.99 4.99 Total: -1.00 -30.72 330.90 -9.27 -39.99 By element: Atomic # 1 Polarization: 6.12 SS G_CDS: -6.47 Total: -0.36 kcal Atomic # 6 Polarization: -9.71 SS G_CDS: -2.10 Total: -11.81 kcal Atomic # 7 Polarization: -44.31 SS G_CDS: -0.29 Total: -44.60 kcal Atomic # 8 Polarization: -4.36 SS G_CDS: -0.38 Total: -4.74 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -30.72 -9.27 -39.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166741003.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.070 kcal (2) G-P(sol) polarization free energy of solvation -30.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds