Wall clock time and date at job start Mon Mar 30 2020 02:12:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 C 1.52993 * 109.46947 * 2 1 4 4 C 1.53002 * 109.47084 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.47502 * 180.02562 * 4 3 2 6 6 C 1.36932 * 120.00101 * 274.89353 * 5 4 3 7 7 H 1.08005 * 119.99932 * 6.36497 * 6 5 4 8 8 C 1.38849 * 120.00178 * 186.37289 * 6 5 4 9 9 N 1.31527 * 119.99715 * 352.82191 * 8 6 5 10 10 Si 1.86796 * 120.00129 * 172.82440 * 8 6 5 11 11 H 1.48507 * 109.47214 * 359.97438 * 10 8 6 12 12 H 1.48499 * 109.47026 * 119.99760 * 10 8 6 13 13 H 1.48494 * 109.47163 * 239.99801 * 10 8 6 14 14 C 1.38513 * 120.00070 * 94.88855 * 5 4 3 15 15 N 1.33035 * 120.54921 * 264.11091 * 14 5 4 16 16 C 1.31714 * 120.54796 * 179.97438 * 15 14 5 17 17 N 1.31708 * 121.87695 * 0.08716 * 16 15 14 18 18 C 1.32920 * 121.11616 * 359.92568 * 17 16 15 19 19 C 1.37539 * 118.97642 * 359.95236 * 18 17 16 20 20 C 1.50404 * 121.97496 * 180.26174 * 19 18 17 21 21 C 1.52996 * 109.84099 * 343.31790 * 20 19 18 22 22 N 1.47153 * 108.57606 * 50.03480 * 21 20 19 23 23 C 1.46698 * 110.37177 * 288.95547 * 22 21 20 24 24 H 1.08995 * 109.47002 * 299.99909 * 1 2 3 25 25 H 1.08997 * 109.46873 * 59.99628 * 1 2 3 26 26 H 1.09000 * 109.47213 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.46709 * 239.99665 * 2 1 3 28 28 H 1.09005 * 109.46721 * 120.00118 * 2 1 3 29 29 H 1.09003 * 109.47023 * 60.00499 * 3 2 1 30 30 H 1.08997 * 109.47637 * 299.99904 * 3 2 1 31 31 H 1.09011 * 109.46567 * 59.99937 * 4 3 2 32 32 H 1.09001 * 109.47556 * 300.00826 * 4 3 2 33 33 H 0.97005 * 120.00408 * 179.97438 * 9 8 6 34 34 H 1.08005 * 119.05829 * 180.36544 * 16 15 14 35 35 H 1.08998 * 109.41584 * 223.20694 * 20 19 18 36 36 H 1.08993 * 109.34780 * 103.39003 * 20 19 18 37 37 H 1.09001 * 109.61877 * 290.30658 * 21 20 19 38 38 H 1.09003 * 109.61695 * 169.76160 * 21 20 19 39 39 H 1.00906 * 110.99780 * 52.45767 * 22 21 20 40 40 H 1.09005 * 109.31838 * 292.17664 * 23 22 21 41 41 H 1.08997 * 109.17337 * 172.63994 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4425 0.0006 5 7 4.0584 2.8237 0.0013 6 6 4.1918 3.5033 -1.1800 7 1 3.8415 3.0601 -2.1005 8 6 4.7777 4.7620 -1.1945 9 7 5.0756 5.3617 -0.0625 10 14 5.1425 5.6038 -2.8216 11 1 4.7156 4.7252 -3.9402 12 1 4.4022 6.8892 -2.8909 13 1 6.6003 5.8658 -2.9274 14 6 4.3852 3.4422 1.1968 15 7 3.5034 4.2203 1.8186 16 6 3.8140 4.8081 2.9557 17 7 4.9950 4.6547 3.5181 18 6 5.9291 3.8932 2.9574 19 6 5.6471 3.2582 1.7704 20 6 6.6516 2.3765 1.0806 21 6 8.0495 2.6445 1.6415 22 7 7.9842 2.5869 3.1105 23 6 7.2647 3.7525 3.6357 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8934 -0.5139 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 1.6767 1.9562 0.8901 30 1 1.6768 1.9563 -0.8899 31 1 3.9337 0.9285 -0.8892 32 1 3.9331 0.9287 0.8908 33 1 5.4852 6.2410 -0.0725 34 1 3.0776 5.4300 3.4431 35 1 6.6441 2.5867 0.0111 36 1 6.3889 1.3318 1.2462 37 1 8.3862 3.6328 1.3286 38 1 8.7420 1.8862 1.2760 39 1 7.5552 1.7276 3.4199 40 1 7.8557 4.6511 3.4583 41 1 7.1131 3.6264 4.7077 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167128621.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:32 Heat of formation + Delta-G solvation = 59.551853 kcal Electronic energy + Delta-G solvation = -22583.333942 eV Core-core repulsion = 19498.309376 eV Total energy + Delta-G solvation = -3085.024566 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.11271 -36.97645 -36.47517 -34.40071 -31.97707 -31.39105 -30.87800 -29.22733 -27.88734 -25.04946 -24.15354 -23.40941 -22.65358 -20.93729 -20.44959 -19.97784 -17.80155 -16.57544 -15.70994 -15.49752 -14.98747 -14.84783 -14.08695 -13.85872 -13.66247 -13.51652 -13.36894 -13.19400 -12.77573 -12.38143 -12.15075 -12.11041 -11.77246 -11.45521 -11.25718 -11.12277 -10.95788 -10.87816 -10.77347 -10.65126 -10.44966 -10.11995 -9.97681 -9.57860 -9.06995 -8.94136 -8.52455 -7.91049 -7.81744 -7.25187 -5.97744 -3.49271 2.26752 2.50940 3.25377 3.31166 3.34352 4.22672 4.59685 4.80699 4.99378 5.09817 5.22642 5.29342 5.35834 5.43668 5.48740 5.59368 5.69388 5.78181 5.82769 5.86301 6.05420 6.06578 6.12795 6.15866 6.21948 6.31661 6.37618 6.39882 6.44920 6.46461 6.52048 6.77875 6.85880 6.98703 7.12927 7.21618 7.49543 7.53904 7.59557 8.05753 8.42236 9.00354 9.46786 9.64132 9.91490 11.02727 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.011904 B = 0.008612 C = 0.006424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2351.550426 B = 3250.483606 C = 4357.310092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.122 4.122 3 C -0.138 4.138 4 C 0.158 3.842 5 N -0.551 5.551 6 C -0.255 4.255 7 H 0.088 0.912 8 C 0.001 3.999 9 N -0.895 5.895 10 Si 0.921 3.079 11 H -0.276 1.276 12 H -0.289 1.289 13 H -0.288 1.288 14 C 0.539 3.461 15 N -0.531 5.531 16 C 0.295 3.705 17 N -0.558 5.558 18 C 0.116 3.884 19 C -0.175 4.175 20 C -0.089 4.089 21 C 0.055 3.945 22 N -0.678 5.678 23 C 0.113 3.887 24 H 0.051 0.949 25 H 0.052 0.948 26 H 0.046 0.954 27 H 0.057 0.943 28 H 0.054 0.946 29 H 0.058 0.942 30 H 0.063 0.937 31 H 0.057 0.943 32 H 0.041 0.959 33 H 0.261 0.739 34 H 0.165 0.835 35 H 0.091 0.909 36 H 0.056 0.944 37 H 0.073 0.927 38 H 0.074 0.926 39 H 0.337 0.663 40 H 0.085 0.915 41 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.310 -8.343 2.974 8.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.160 4.160 3 C -0.178 4.178 4 C 0.032 3.968 5 N -0.269 5.269 6 C -0.383 4.383 7 H 0.106 0.894 8 C -0.198 4.198 9 N -0.539 5.539 10 Si 0.751 3.249 11 H -0.201 1.201 12 H -0.216 1.216 13 H -0.214 1.214 14 C 0.302 3.698 15 N -0.250 5.250 16 C 0.004 3.996 17 N -0.276 5.276 18 C -0.028 4.028 19 C -0.183 4.183 20 C -0.129 4.129 21 C -0.075 4.075 22 N -0.305 5.305 23 C -0.018 4.018 24 H 0.070 0.930 25 H 0.071 0.929 26 H 0.066 0.934 27 H 0.076 0.924 28 H 0.073 0.927 29 H 0.077 0.923 30 H 0.082 0.918 31 H 0.076 0.924 32 H 0.059 0.941 33 H 0.074 0.926 34 H 0.182 0.818 35 H 0.109 0.891 36 H 0.074 0.926 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.154 0.846 40 H 0.104 0.896 41 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 0.397 -7.323 3.455 8.107 hybrid contribution -0.448 0.325 -1.616 1.708 sum -0.051 -6.999 1.840 7.237 Atomic orbital electron populations 1.21752 0.96460 1.00679 1.01757 1.21494 0.95421 0.97895 1.01190 1.22200 0.98145 0.94889 1.02606 1.20862 0.92193 0.84063 0.99646 1.41434 1.74929 1.09533 1.01003 1.19400 1.34345 0.99850 0.84677 0.89405 1.24895 0.99921 0.97351 0.97627 1.69275 1.45895 1.15047 1.23665 0.85895 0.77737 0.79190 0.82066 1.20144 1.21626 1.21422 1.17495 0.86253 0.82458 0.83640 1.68319 1.38402 1.09919 1.08374 1.24041 0.91575 0.94874 0.89061 1.68043 1.03076 1.19501 1.36993 1.21559 0.95924 0.92970 0.92306 1.20903 0.96942 1.03430 0.97064 1.20724 0.93131 0.96880 1.02131 1.22104 0.96047 1.02360 0.86949 1.61155 1.54186 1.04985 1.10161 1.20649 0.88258 0.94553 0.98305 0.92990 0.92897 0.93449 0.92414 0.92723 0.92282 0.91812 0.92423 0.94075 0.92630 0.81834 0.89094 0.92558 0.90850 0.90774 0.84636 0.89647 0.89632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 9.91 37.16 0.37 -1.48 16 2 C -0.12 -1.67 5.93 -26.73 -0.16 -1.83 16 3 C -0.14 -2.44 5.51 -26.73 -0.15 -2.58 16 4 C 0.16 3.01 5.66 -4.04 -0.02 2.98 16 5 N -0.55 -12.87 1.85 -114.79 -0.21 -13.08 16 6 C -0.25 -6.46 9.69 -15.05 -0.15 -6.61 16 7 H 0.09 2.16 7.84 -52.48 -0.41 1.74 16 8 C 0.00 0.02 5.44 -17.46 -0.09 -0.08 16 9 N -0.89 -24.76 9.77 55.49 0.54 -24.22 16 10 Si 0.92 21.21 29.56 -169.99 -5.02 16.19 16 11 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 12 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 13 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 14 C 0.54 12.99 3.57 -154.69 -0.55 12.43 16 15 N -0.53 -13.23 9.87 -13.78 -0.14 -13.36 16 16 C 0.30 6.68 12.28 -92.30 -1.13 5.55 16 17 N -0.56 -12.27 10.34 -11.04 -0.11 -12.38 16 18 C 0.12 2.43 6.69 -82.50 -0.55 1.88 16 19 C -0.17 -3.83 5.12 -104.42 -0.53 -4.37 16 20 C -0.09 -1.67 5.46 -28.03 -0.15 -1.83 16 21 C 0.05 0.89 6.62 -3.69 -0.02 0.86 16 22 N -0.68 -10.33 6.95 -115.15 -0.80 -11.13 16 23 C 0.11 1.93 6.61 -5.21 -0.03 1.89 16 24 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 26 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 29 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 30 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 31 H 0.06 1.03 8.08 -51.92 -0.42 0.61 16 32 H 0.04 0.74 8.01 -51.93 -0.42 0.33 16 33 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 34 H 0.16 3.18 8.06 -52.48 -0.42 2.76 16 35 H 0.09 1.96 7.80 -51.93 -0.40 1.55 16 36 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 37 H 0.07 1.31 8.05 -51.93 -0.42 0.89 16 38 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.34 4.70 8.75 -39.29 -0.34 4.36 16 40 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 41 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 LS Contribution 332.61 15.07 5.01 5.01 Total: -1.00 -29.11 332.61 -10.54 -39.65 By element: Atomic # 1 Polarization: 13.11 SS G_CDS: -6.62 Total: 6.49 kcal Atomic # 6 Polarization: 10.01 SS G_CDS: -3.18 Total: 6.82 kcal Atomic # 7 Polarization: -73.45 SS G_CDS: -0.72 Total: -74.17 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -29.11 -10.54 -39.65 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167128621.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.204 kcal (2) G-P(sol) polarization free energy of solvation -29.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.652 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds