Wall clock time and date at job start Mon Mar 30 2020 02:12:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.46829 * 2 1 4 4 C 1.53000 * 109.46716 * 179.97438 * 3 2 1 5 5 N 1.46504 * 109.47057 * 179.97438 * 4 3 2 6 6 C 1.36983 * 120.00075 * 264.54568 * 5 4 3 7 7 H 1.07998 * 120.00300 * 146.31529 * 6 5 4 8 8 C 1.38832 * 119.99998 * 326.30543 * 6 5 4 9 9 N 1.31544 * 119.99943 * 337.21796 * 8 6 5 10 10 Si 1.86803 * 119.99852 * 157.20991 * 8 6 5 11 11 H 1.48498 * 109.47010 * 90.00230 * 10 8 6 12 12 H 1.48499 * 109.46994 * 210.00478 * 10 8 6 13 13 H 1.48507 * 109.47126 * 330.00405 * 10 8 6 14 14 C 1.38438 * 119.99507 * 84.53825 * 5 4 3 15 15 N 1.32548 * 119.23568 * 0.02562 * 14 5 4 16 16 C 1.32163 * 120.65894 * 180.12607 * 15 14 5 17 17 C 1.38918 * 119.22985 * 359.97144 * 16 15 14 18 18 C 1.38031 * 118.63322 * 359.83985 * 17 16 15 19 19 N 1.32444 * 119.23171 * 180.02562 * 14 5 4 20 20 C 1.50556 * 121.64516 * 180.55516 * 18 17 16 21 21 C 1.52964 * 109.84144 * 342.93276 * 20 18 17 22 22 N 1.47141 * 108.65307 * 50.35933 * 21 20 18 23 23 C 1.46724 * 110.34848 * 288.83690 * 22 21 20 24 24 H 1.09008 * 109.47174 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.47776 * 300.00288 * 1 2 3 26 26 H 1.08995 * 109.47518 * 60.00426 * 1 2 3 27 27 H 1.08998 * 109.47138 * 239.99452 * 2 1 3 28 28 H 1.09005 * 109.46766 * 119.99538 * 2 1 3 29 29 H 1.08996 * 109.47220 * 59.99655 * 3 2 1 30 30 H 1.08994 * 109.46638 * 299.99516 * 3 2 1 31 31 H 1.09009 * 109.47276 * 60.00323 * 4 3 2 32 32 H 1.08997 * 109.47529 * 300.00139 * 4 3 2 33 33 H 0.97000 * 119.99285 * 180.02562 * 9 8 6 34 34 H 1.07999 * 120.38171 * 179.97438 * 16 15 14 35 35 H 1.09001 * 109.40487 * 103.06996 * 20 18 17 36 36 H 1.08990 * 109.40614 * 222.84143 * 20 18 17 37 37 H 1.08998 * 109.61819 * 290.60188 * 21 20 18 38 38 H 1.09005 * 109.73535 * 170.17992 * 21 20 18 39 39 H 1.00896 * 110.99971 * 165.34806 * 22 21 20 40 40 H 1.08999 * 109.32615 * 292.11267 * 23 22 21 41 41 H 1.08996 * 109.18072 * 172.55219 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4425 0.0006 5 7 4.0583 2.8238 0.0000 6 6 4.3934 3.4312 -1.1811 7 1 4.2283 4.4908 -1.3093 8 6 4.9455 2.6849 -2.2134 9 7 5.5555 1.5494 -1.9507 10 14 4.8217 3.2930 -3.9753 11 1 6.0000 4.1400 -4.2905 12 1 4.7864 2.1306 -4.8988 13 1 3.5803 4.0918 -4.1373 14 6 4.1809 3.5150 1.1932 15 7 3.8526 2.9124 2.3272 16 6 3.9564 3.5466 3.4820 17 6 4.4155 4.8576 3.4971 18 6 4.7525 5.4543 2.2988 19 7 4.6234 4.7632 1.1750 20 6 5.2688 6.8672 2.2376 21 6 4.9478 7.5944 3.5445 22 7 5.3946 6.7586 4.6701 23 6 4.5268 5.5837 4.8091 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3635 0.5139 0.8900 26 1 -0.3634 0.5137 -0.8900 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 1.6765 1.9564 0.8899 30 1 1.6766 1.9562 -0.8900 31 1 3.9337 0.9286 -0.8892 32 1 3.9329 0.9288 0.8908 33 1 5.9415 1.0282 -2.6720 34 1 3.6873 3.0514 4.4033 35 1 6.3482 6.8521 2.0868 36 1 4.7954 7.3901 1.4068 37 1 3.8729 7.7605 3.6164 38 1 5.4685 8.5517 3.5706 39 1 5.4226 7.2908 5.5268 40 1 3.5353 5.9034 5.1295 41 1 4.9490 4.9132 5.5576 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167129162.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:43 Heat of formation + Delta-G solvation = 52.538391 kcal Electronic energy + Delta-G solvation = -21727.256020 eV Core-core repulsion = 18641.927327 eV Total energy + Delta-G solvation = -3085.328693 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.08434 -37.45675 -36.03740 -34.07411 -33.02612 -32.03759 -30.24675 -29.92036 -28.12231 -25.43014 -23.84400 -23.71482 -22.13725 -21.81951 -20.45818 -19.29504 -17.77695 -16.81532 -15.96346 -15.48152 -14.84362 -14.78320 -14.66004 -14.24338 -13.81230 -13.48499 -13.43219 -13.30843 -13.06982 -12.51215 -12.30464 -12.05970 -11.90600 -11.51596 -11.41749 -11.25850 -11.09497 -10.95383 -10.65745 -10.49908 -10.37530 -10.21934 -9.82832 -9.71211 -9.52094 -9.16904 -8.58469 -8.29064 -7.84759 -6.94150 -6.38156 -3.89620 2.23479 2.31145 3.15598 3.20226 3.25554 3.97409 4.38570 4.46284 4.71542 5.04647 5.08102 5.20118 5.40075 5.45958 5.52705 5.57180 5.59697 5.63565 5.70474 5.73942 5.91297 6.03389 6.09186 6.19707 6.21717 6.29361 6.35619 6.39018 6.49423 6.53574 6.67053 6.80307 6.83721 7.01366 7.12038 7.30701 7.36067 7.51018 7.58936 8.02149 8.32234 8.51707 9.12847 9.33163 9.88669 10.58347 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.014944 B = 0.006137 C = 0.004676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1873.211343 B = 4561.556642 C = 5986.668239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.118 4.118 3 C -0.127 4.127 4 C 0.125 3.875 5 N -0.389 5.389 6 C -0.289 4.289 7 H 0.100 0.900 8 C 0.032 3.968 9 N -0.860 5.860 10 Si 0.923 3.077 11 H -0.275 1.275 12 H -0.281 1.281 13 H -0.268 1.268 14 C 0.511 3.489 15 N -0.588 5.588 16 C 0.196 3.804 17 C -0.325 4.325 18 C 0.233 3.767 19 N -0.567 5.567 20 C -0.063 4.063 21 C 0.061 3.939 22 N -0.686 5.686 23 C 0.134 3.866 24 H 0.047 0.953 25 H 0.050 0.950 26 H 0.050 0.950 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.054 0.946 30 H 0.056 0.944 31 H 0.109 0.891 32 H 0.058 0.942 33 H 0.270 0.730 34 H 0.144 0.856 35 H 0.087 0.913 36 H 0.082 0.918 37 H 0.033 0.967 38 H 0.076 0.924 39 H 0.338 0.662 40 H 0.025 0.975 41 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.751 4.304 7.990 10.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.156 4.156 3 C -0.166 4.166 4 C 0.001 3.999 5 N -0.082 5.082 6 C -0.419 4.419 7 H 0.117 0.883 8 C -0.173 4.173 9 N -0.495 5.495 10 Si 0.749 3.251 11 H -0.201 1.201 12 H -0.207 1.207 13 H -0.192 1.192 14 C 0.158 3.842 15 N -0.312 5.312 16 C 0.023 3.977 17 C -0.338 4.338 18 C 0.080 3.920 19 N -0.291 5.291 20 C -0.102 4.102 21 C -0.069 4.069 22 N -0.316 5.316 23 C 0.004 3.996 24 H 0.066 0.934 25 H 0.069 0.931 26 H 0.069 0.931 27 H 0.078 0.922 28 H 0.077 0.923 29 H 0.072 0.928 30 H 0.075 0.925 31 H 0.127 0.873 32 H 0.076 0.924 33 H 0.080 0.920 34 H 0.161 0.839 35 H 0.105 0.895 36 H 0.101 0.899 37 H 0.051 0.949 38 H 0.095 0.905 39 H 0.155 0.845 40 H 0.043 0.957 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -4.283 3.053 6.223 8.148 hybrid contribution -0.648 0.999 0.421 1.263 sum -4.932 4.052 6.643 9.213 Atomic orbital electron populations 1.21752 0.96620 1.00687 1.01458 1.21408 0.94970 0.97542 1.01668 1.21923 0.97648 0.95632 1.01405 1.21562 0.91258 0.82992 1.04062 1.42315 1.53855 1.11176 1.00820 1.19604 1.39000 0.95801 0.87465 0.88288 1.25435 0.94459 0.96596 1.00852 1.70021 1.31204 1.15031 1.33262 0.85983 0.79160 0.78423 0.81508 1.20118 1.20659 1.19247 1.19654 0.91230 0.87058 0.86209 1.67864 1.26878 1.38401 0.98042 1.22380 0.90132 0.90023 0.95181 1.20098 1.19255 0.98740 0.95706 1.20598 0.89149 0.94614 0.87639 1.67846 1.23175 1.08487 1.29623 1.20355 1.01969 0.90908 0.96936 1.21931 0.98033 0.95575 0.91346 1.60567 1.54012 1.09597 1.07434 1.20203 0.93366 0.91298 0.94746 0.93376 0.93124 0.93073 0.92247 0.92271 0.92751 0.92475 0.87304 0.92351 0.91951 0.83902 0.89496 0.89926 0.94876 0.90536 0.84496 0.95719 0.90999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.06 9.91 37.16 0.37 -1.69 16 2 C -0.12 -1.94 5.93 -26.73 -0.16 -2.10 16 3 C -0.13 -2.57 5.51 -26.73 -0.15 -2.72 16 4 C 0.13 2.97 4.89 -4.04 -0.02 2.95 16 5 N -0.39 -10.24 2.65 -117.06 -0.31 -10.55 16 6 C -0.29 -7.87 8.97 -15.03 -0.13 -8.01 16 7 H 0.10 2.75 7.64 -52.49 -0.40 2.35 16 8 C 0.03 0.84 4.90 -17.46 -0.09 0.76 16 9 N -0.86 -23.14 11.36 55.49 0.63 -22.51 16 10 Si 0.92 20.22 29.61 -169.99 -5.03 15.18 16 11 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 12 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 13 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 14 C 0.51 13.12 8.11 -322.75 -2.62 10.51 16 15 N -0.59 -13.67 9.22 -13.87 -0.13 -13.80 16 16 C 0.20 3.84 10.97 -17.16 -0.19 3.65 16 17 C -0.33 -6.12 5.80 -104.61 -0.61 -6.72 16 18 C 0.23 4.86 6.67 -82.42 -0.55 4.31 16 19 N -0.57 -14.14 9.28 -10.27 -0.10 -14.23 16 20 C -0.06 -1.05 6.22 -27.97 -0.17 -1.22 16 21 C 0.06 0.79 6.58 -3.71 -0.02 0.76 16 22 N -0.69 -8.98 6.88 -115.21 -0.79 -9.77 16 23 C 0.13 1.91 6.38 -5.23 -0.03 1.88 16 24 H 0.05 0.58 8.14 -51.92 -0.42 0.16 16 25 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 28 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 29 H 0.05 1.14 8.14 -51.93 -0.42 0.71 16 30 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 31 H 0.11 2.75 5.35 -51.92 -0.28 2.47 16 32 H 0.06 1.41 7.52 -51.93 -0.39 1.01 16 33 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 34 H 0.14 2.21 8.06 -52.49 -0.42 1.79 16 35 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 36 H 0.08 1.32 8.14 -51.93 -0.42 0.89 16 37 H 0.03 0.42 8.05 -51.93 -0.42 0.01 16 38 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.34 3.36 8.90 -39.29 -0.35 3.01 16 40 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 41 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 332.69 15.07 5.01 5.01 Total: -1.00 -30.34 332.69 -11.55 -41.89 By element: Atomic # 1 Polarization: 12.89 SS G_CDS: -6.47 Total: 6.43 kcal Atomic # 6 Polarization: 6.73 SS G_CDS: -4.37 Total: 2.36 kcal Atomic # 7 Polarization: -70.17 SS G_CDS: -0.69 Total: -70.87 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.03 Total: 15.18 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -30.34 -11.55 -41.89 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167129162.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.428 kcal (2) G-P(sol) polarization free energy of solvation -30.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.890 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds