Wall clock time and date at job start Mon Mar 30 2020 02:12:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.46829 * 2 1 4 4 C 1.53000 * 109.46716 * 179.97438 * 3 2 1 5 5 N 1.46504 * 109.47057 * 179.97438 * 4 3 2 6 6 C 1.36983 * 120.00075 * 264.54568 * 5 4 3 7 7 H 1.07998 * 120.00300 * 146.31529 * 6 5 4 8 8 C 1.38832 * 119.99998 * 326.30543 * 6 5 4 9 9 N 1.31544 * 119.99943 * 337.21796 * 8 6 5 10 10 Si 1.86803 * 119.99852 * 157.20991 * 8 6 5 11 11 H 1.48498 * 109.47010 * 90.00230 * 10 8 6 12 12 H 1.48499 * 109.46994 * 210.00478 * 10 8 6 13 13 H 1.48507 * 109.47126 * 330.00405 * 10 8 6 14 14 C 1.38438 * 119.99507 * 84.53825 * 5 4 3 15 15 N 1.32548 * 119.23568 * 0.02562 * 14 5 4 16 16 C 1.32163 * 120.65894 * 180.12607 * 15 14 5 17 17 C 1.38918 * 119.22985 * 359.97144 * 16 15 14 18 18 C 1.38031 * 118.63322 * 359.83985 * 17 16 15 19 19 N 1.32444 * 119.23171 * 180.02562 * 14 5 4 20 20 C 1.50556 * 121.64516 * 180.55516 * 18 17 16 21 21 C 1.52964 * 109.84144 * 342.93276 * 20 18 17 22 22 N 1.47141 * 108.65307 * 50.35933 * 21 20 18 23 23 C 1.46724 * 110.34848 * 288.83690 * 22 21 20 24 24 H 1.09008 * 109.47174 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.47776 * 300.00288 * 1 2 3 26 26 H 1.08995 * 109.47518 * 60.00426 * 1 2 3 27 27 H 1.08998 * 109.47138 * 239.99452 * 2 1 3 28 28 H 1.09005 * 109.46766 * 119.99538 * 2 1 3 29 29 H 1.08996 * 109.47220 * 59.99655 * 3 2 1 30 30 H 1.08994 * 109.46638 * 299.99516 * 3 2 1 31 31 H 1.09009 * 109.47276 * 60.00323 * 4 3 2 32 32 H 1.08997 * 109.47529 * 300.00139 * 4 3 2 33 33 H 0.97000 * 119.99285 * 180.02562 * 9 8 6 34 34 H 1.07999 * 120.38171 * 179.97438 * 16 15 14 35 35 H 1.09001 * 109.40487 * 103.06996 * 20 18 17 36 36 H 1.08990 * 109.40614 * 222.84143 * 20 18 17 37 37 H 1.08998 * 109.61819 * 290.60188 * 21 20 18 38 38 H 1.09005 * 109.73535 * 170.17992 * 21 20 18 39 39 H 1.00896 * 110.99971 * 165.34806 * 22 21 20 40 40 H 1.08999 * 109.32615 * 292.11267 * 23 22 21 41 41 H 1.08996 * 109.18072 * 172.55219 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4425 0.0006 5 7 4.0583 2.8238 0.0000 6 6 4.3934 3.4312 -1.1811 7 1 4.2283 4.4908 -1.3093 8 6 4.9455 2.6849 -2.2134 9 7 5.5555 1.5494 -1.9507 10 14 4.8217 3.2930 -3.9753 11 1 6.0000 4.1400 -4.2905 12 1 4.7864 2.1306 -4.8988 13 1 3.5803 4.0918 -4.1373 14 6 4.1809 3.5150 1.1932 15 7 3.8526 2.9124 2.3272 16 6 3.9564 3.5466 3.4820 17 6 4.4155 4.8576 3.4971 18 6 4.7525 5.4543 2.2988 19 7 4.6234 4.7632 1.1750 20 6 5.2688 6.8672 2.2376 21 6 4.9478 7.5944 3.5445 22 7 5.3946 6.7586 4.6701 23 6 4.5268 5.5837 4.8091 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3635 0.5139 0.8900 26 1 -0.3634 0.5137 -0.8900 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 1.6765 1.9564 0.8899 30 1 1.6766 1.9562 -0.8900 31 1 3.9337 0.9286 -0.8892 32 1 3.9329 0.9288 0.8908 33 1 5.9415 1.0282 -2.6720 34 1 3.6873 3.0514 4.4033 35 1 6.3482 6.8521 2.0868 36 1 4.7954 7.3901 1.4068 37 1 3.8729 7.7605 3.6164 38 1 5.4685 8.5517 3.5706 39 1 5.4226 7.2908 5.5268 40 1 3.5353 5.9034 5.1295 41 1 4.9490 4.9132 5.5576 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167129162.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:42 Heat of formation + Delta-G solvation = 34.868757 kcal Electronic energy + Delta-G solvation = -21728.022233 eV Core-core repulsion = 18641.927327 eV Total energy + Delta-G solvation = -3086.094906 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.74478 -38.99968 -37.53259 -35.61011 -34.62337 -33.87217 -31.70414 -31.37863 -29.70279 -27.18974 -25.34254 -25.18545 -23.63144 -23.33599 -21.95165 -20.83121 -19.56069 -18.33390 -17.84743 -16.82240 -16.55659 -16.28692 -16.11338 -15.57223 -15.35874 -15.09124 -14.92266 -14.71706 -14.47995 -13.95569 -13.75625 -13.61080 -13.33015 -13.16649 -12.96860 -12.79558 -12.66569 -12.22325 -12.13720 -12.05043 -11.96643 -11.80532 -11.47393 -11.37310 -11.22202 -10.95465 -10.30210 -9.60674 -9.38800 -8.75962 -8.28049 -5.91299 0.56354 0.64989 1.39291 1.41972 1.53276 2.19708 2.69972 2.83504 3.32035 3.36470 3.64057 3.81150 3.99577 4.09023 4.22792 4.23641 4.30877 4.32955 4.43780 4.49724 4.56253 4.68253 4.83753 4.86195 4.87734 4.91140 4.95974 4.99733 5.04640 5.11705 5.16922 5.30968 5.36148 5.41492 5.44029 5.56588 5.80209 6.02098 6.15434 6.51047 6.60420 6.71746 7.23452 7.47546 8.05342 8.65878 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.014944 B = 0.006137 C = 0.004676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1873.211343 B = 4561.556642 C = 5986.668239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.112 4.112 3 C -0.112 4.112 4 C 0.135 3.865 5 N -0.418 5.418 6 C -0.312 4.312 7 H 0.079 0.921 8 C -0.006 4.006 9 N -0.893 5.893 10 Si 0.988 3.012 11 H -0.274 1.274 12 H -0.270 1.270 13 H -0.265 1.265 14 C 0.495 3.505 15 N -0.605 5.605 16 C 0.184 3.816 17 C -0.308 4.308 18 C 0.205 3.795 19 N -0.607 5.607 20 C -0.064 4.064 21 C 0.070 3.930 22 N -0.694 5.694 23 C 0.135 3.865 24 H 0.072 0.928 25 H 0.052 0.948 26 H 0.051 0.949 27 H 0.059 0.941 28 H 0.064 0.936 29 H 0.043 0.957 30 H 0.042 0.958 31 H 0.090 0.910 32 H 0.044 0.956 33 H 0.273 0.727 34 H 0.188 0.812 35 H 0.082 0.918 36 H 0.081 0.919 37 H 0.038 0.962 38 H 0.109 0.891 39 H 0.362 0.638 40 H 0.048 0.952 41 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.492 5.360 10.015 12.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.151 4.151 3 C -0.151 4.151 4 C 0.011 3.989 5 N -0.115 5.115 6 C -0.441 4.441 7 H 0.097 0.903 8 C -0.209 4.209 9 N -0.530 5.530 10 Si 0.811 3.189 11 H -0.200 1.200 12 H -0.195 1.195 13 H -0.190 1.190 14 C 0.142 3.858 15 N -0.330 5.330 16 C 0.013 3.987 17 C -0.320 4.320 18 C 0.056 3.944 19 N -0.332 5.332 20 C -0.103 4.103 21 C -0.060 4.060 22 N -0.327 5.327 23 C 0.005 3.995 24 H 0.091 0.909 25 H 0.071 0.929 26 H 0.070 0.930 27 H 0.077 0.923 28 H 0.082 0.918 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.107 0.893 32 H 0.062 0.938 33 H 0.083 0.917 34 H 0.205 0.795 35 H 0.100 0.900 36 H 0.099 0.901 37 H 0.056 0.944 38 H 0.127 0.873 39 H 0.182 0.818 40 H 0.066 0.934 41 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -5.023 4.166 8.348 10.596 hybrid contribution -0.365 0.801 0.089 0.885 sum -5.388 4.967 8.437 11.175 Atomic orbital electron populations 1.21704 0.94211 1.02374 1.01624 1.21383 0.97005 0.94754 1.01920 1.21774 0.95324 0.97952 1.00033 1.21432 0.93161 0.82110 1.02158 1.42426 1.56204 1.11909 1.00913 1.19538 1.40337 0.95322 0.88925 0.90326 1.26211 0.93698 0.96750 1.04212 1.70107 1.32316 1.16217 1.34341 0.85023 0.78958 0.78127 0.76787 1.20009 1.19463 1.18959 1.19988 0.91404 0.87471 0.86935 1.67911 1.27475 1.39128 0.98530 1.23223 0.89224 0.90756 0.95473 1.20733 1.15414 0.98523 0.97294 1.21478 0.89057 0.96339 0.87566 1.67874 1.24455 1.08808 1.32082 1.20501 1.01323 0.88879 0.99559 1.21904 0.98825 0.96147 0.89135 1.60472 1.53732 1.09743 1.08718 1.20270 0.95180 0.91953 0.92071 0.90898 0.92867 0.93033 0.92255 0.91763 0.93822 0.93873 0.89250 0.93782 0.91720 0.79493 0.89989 0.90064 0.94350 0.87252 0.81791 0.93412 0.88835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.75 9.91 71.98 0.71 -3.04 16 2 C -0.11 -3.70 5.93 30.59 0.18 -3.52 16 3 C -0.11 -4.69 5.51 30.60 0.17 -4.53 16 4 C 0.14 6.76 4.89 86.38 0.42 7.18 16 5 N -0.42 -23.23 2.65 -524.27 -1.39 -24.61 16 6 C -0.31 -17.94 8.97 84.03 0.75 -17.19 16 7 H 0.08 4.68 7.64 -2.91 -0.02 4.66 16 8 C -0.01 -0.35 4.90 84.88 0.42 0.06 16 9 N -0.89 -50.16 11.36 21.65 0.25 -49.91 16 10 Si 0.99 42.87 29.61 68.60 2.03 44.91 16 11 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 12 H -0.27 -11.09 7.11 99.48 0.71 -10.39 16 13 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 14 C 0.50 26.45 8.11 261.47 2.12 28.57 16 15 N -0.61 -28.59 9.22 -197.79 -1.82 -30.42 16 16 C 0.18 6.93 10.97 84.81 0.93 7.86 16 17 C -0.31 -10.99 5.80 -19.86 -0.12 -11.11 16 18 C 0.21 8.54 6.67 42.35 0.28 8.82 16 19 N -0.61 -31.34 9.28 -186.40 -1.73 -33.07 16 20 C -0.06 -2.06 6.22 29.79 0.19 -1.87 16 21 C 0.07 1.56 6.58 86.25 0.57 2.12 16 22 N -0.69 -15.26 6.88 -518.42 -3.56 -18.82 16 23 C 0.14 3.29 6.38 85.49 0.55 3.84 16 24 H 0.07 1.58 8.14 -2.38 -0.02 1.56 16 25 H 0.05 1.37 8.14 -2.38 -0.02 1.35 16 26 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 27 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 28 H 0.06 2.04 8.14 -2.38 -0.02 2.02 16 29 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 30 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 31 H 0.09 4.79 5.35 -2.38 -0.01 4.78 16 32 H 0.04 2.24 7.52 -2.39 -0.02 2.22 16 33 H 0.27 14.27 8.31 -92.71 -0.77 13.50 16 34 H 0.19 5.17 8.06 -2.91 -0.02 5.15 16 35 H 0.08 2.69 8.14 -2.39 -0.02 2.67 16 36 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 37 H 0.04 0.84 8.05 -2.39 -0.02 0.82 16 38 H 0.11 1.78 8.14 -2.38 -0.02 1.76 16 39 H 0.36 5.38 8.90 -89.70 -0.80 4.58 16 40 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 41 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 Total: -1.00 -70.31 332.69 1.17 -69.14 By element: Atomic # 1 Polarization: 25.36 SS G_CDS: 0.22 Total: 25.59 kcal Atomic # 6 Polarization: 10.03 SS G_CDS: 7.17 Total: 17.20 kcal Atomic # 7 Polarization: -148.58 SS G_CDS: -8.26 Total: -156.84 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 2.03 Total: 44.91 kcal Total: -70.31 1.17 -69.14 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167129162.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.014 kcal (2) G-P(sol) polarization free energy of solvation -70.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.145 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds