Wall clock time and date at job start Mon Mar 30 2020 02:12:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.46869 * 2 1 4 4 C 1.52998 * 109.46869 * 180.02562 * 3 2 1 5 5 N 1.46507 * 109.47070 * 180.02562 * 4 3 2 6 6 C 1.36899 * 120.00056 * 270.00267 * 5 4 3 7 7 H 1.08001 * 119.99922 * 145.55099 * 6 5 4 8 8 C 1.38820 * 120.00187 * 325.55726 * 6 5 4 9 9 N 1.31562 * 119.99800 * 337.48821 * 8 6 5 10 10 Si 1.86799 * 120.00333 * 157.49279 * 8 6 5 11 11 H 1.48505 * 109.47047 * 359.97438 * 10 8 6 12 12 H 1.48501 * 109.47464 * 119.99518 * 10 8 6 13 13 H 1.48496 * 109.46856 * 239.99892 * 10 8 6 14 14 C 1.38878 * 119.99723 * 90.00356 * 5 4 3 15 15 C 1.39549 * 120.25350 * 171.30084 * 14 5 4 16 16 C 1.38704 * 117.91244 * 179.97438 * 15 14 5 17 17 C 1.38249 * 118.35818 * 359.87033 * 16 15 14 18 18 N 1.32311 * 119.66520 * 0.21488 * 17 16 15 19 19 N 1.28208 * 122.47757 * 359.83940 * 18 17 16 20 20 C 1.50689 * 121.35786 * 180.44350 * 17 16 15 21 21 C 1.52930 * 109.85509 * 342.77185 * 20 17 16 22 22 N 1.47132 * 108.68797 * 50.64871 * 21 20 17 23 23 C 1.46780 * 110.26914 * 288.72259 * 22 21 20 24 24 H 1.08997 * 109.47180 * 299.99234 * 1 2 3 25 25 H 1.09001 * 109.47429 * 59.99975 * 1 2 3 26 26 H 1.09005 * 109.46621 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.46809 * 240.00683 * 2 1 3 28 28 H 1.08999 * 109.47731 * 120.00734 * 2 1 3 29 29 H 1.09004 * 109.46847 * 60.00706 * 3 2 1 30 30 H 1.08997 * 109.47579 * 300.00306 * 3 2 1 31 31 H 1.08997 * 109.47180 * 60.00765 * 4 3 2 32 32 H 1.09003 * 109.47891 * 300.00263 * 4 3 2 33 33 H 0.97000 * 120.00395 * 175.83704 * 9 8 6 34 34 H 1.08003 * 121.04123 * 359.94387 * 15 14 5 35 35 H 1.09001 * 109.40778 * 102.88507 * 20 17 16 36 36 H 1.08994 * 109.40534 * 222.65223 * 20 17 16 37 37 H 1.09007 * 109.59969 * 170.41236 * 21 20 17 38 38 H 1.08998 * 109.59929 * 290.72890 * 21 20 17 39 39 H 1.00896 * 111.00373 * 165.29871 * 22 21 20 40 40 H 1.08997 * 109.37092 * 291.94282 * 23 22 21 41 41 H 1.09008 * 109.29568 * 172.47708 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4425 -0.0006 5 7 4.0582 2.8238 0.0000 6 6 4.2859 3.4699 -1.1853 7 1 4.0996 4.5306 -1.2666 8 6 4.7559 2.7617 -2.2828 9 7 5.3928 1.6239 -2.1078 10 14 4.4843 3.4241 -4.0081 11 1 3.7467 4.7110 -3.9339 12 1 5.7971 3.6429 -4.6669 13 1 3.6925 2.4450 -4.7953 14 6 4.2903 3.4777 1.2030 15 6 4.9233 4.7213 1.2167 16 6 5.1301 5.3312 2.4451 17 6 4.6971 4.6776 3.5839 18 7 4.1067 3.4983 3.4776 19 7 3.9118 2.9254 2.3474 20 6 4.8782 5.2827 4.9520 21 6 5.9243 6.3968 4.8929 22 7 5.5765 7.3123 3.7949 23 6 5.8171 6.6665 2.4989 24 1 -0.3633 0.5137 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 1.6766 1.9563 0.8901 30 1 1.6766 1.9564 -0.8899 31 1 3.9329 0.9290 -0.8909 32 1 3.9338 0.9285 0.8891 33 1 5.6681 1.0990 -2.8757 34 1 5.2426 5.1937 0.2994 35 1 3.9290 5.6951 5.2942 36 1 5.2089 4.5119 5.6480 37 1 5.9306 6.9428 5.8363 38 1 6.9089 5.9647 4.7139 39 1 6.0906 8.1773 3.8687 40 1 6.8889 6.5268 2.3581 41 1 5.4313 7.3028 1.7023 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167132293.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:35 Heat of formation + Delta-G solvation = 52.300414 kcal Electronic energy + Delta-G solvation = -21677.798335 eV Core-core repulsion = 18592.459323 eV Total energy + Delta-G solvation = -3085.339012 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.11869 -37.51281 -36.35725 -34.18659 -32.64434 -31.93038 -31.17337 -29.22962 -27.91004 -25.41301 -24.82062 -23.32655 -22.43420 -21.56960 -20.37937 -19.66961 -17.42726 -16.99337 -16.02179 -15.49948 -15.20090 -14.80082 -14.66397 -14.18036 -14.14753 -13.69252 -13.53851 -13.21818 -12.75223 -12.32545 -12.27258 -12.03287 -11.91901 -11.60985 -11.47792 -11.36789 -11.25775 -11.14608 -10.65252 -10.49705 -10.41883 -10.29860 -9.90019 -9.78704 -9.51706 -8.97478 -8.73840 -8.49508 -8.25890 -7.06708 -6.44651 -4.10159 1.93040 2.27696 3.04476 3.11394 3.15476 3.89242 4.26827 4.50461 4.59382 4.89719 5.00903 5.19090 5.30935 5.48281 5.50661 5.52728 5.59796 5.60794 5.67701 5.81078 5.97686 6.03523 6.07993 6.11024 6.25314 6.26289 6.36550 6.40232 6.47717 6.55784 6.70532 6.74055 6.84268 6.98201 6.99372 7.08283 7.19513 7.28432 7.38522 7.47989 7.90112 8.44836 9.06617 9.35705 10.13185 10.42579 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.015382 B = 0.005970 C = 0.004574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1819.840244 B = 4688.847625 C = 6119.909426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.118 4.118 3 C -0.127 4.127 4 C 0.117 3.883 5 N -0.404 5.404 6 C -0.315 4.315 7 H 0.092 0.908 8 C 0.040 3.960 9 N -0.849 5.849 10 Si 0.918 3.082 11 H -0.266 1.266 12 H -0.279 1.279 13 H -0.276 1.276 14 C 0.309 3.691 15 C -0.182 4.182 16 C -0.050 4.050 17 C -0.041 4.041 18 N -0.204 5.204 19 N -0.336 5.336 20 C -0.037 4.037 21 C 0.056 3.944 22 N -0.683 5.683 23 C 0.103 3.897 24 H 0.051 0.949 25 H 0.050 0.950 26 H 0.047 0.953 27 H 0.057 0.943 28 H 0.059 0.941 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.108 0.892 32 H 0.057 0.943 33 H 0.272 0.728 34 H 0.137 0.863 35 H 0.074 0.926 36 H 0.073 0.927 37 H 0.077 0.923 38 H 0.034 0.966 39 H 0.341 0.659 40 H 0.045 0.955 41 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.523 5.104 5.095 7.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.157 4.157 3 C -0.165 4.165 4 C -0.007 4.007 5 N -0.094 5.094 6 C -0.444 4.444 7 H 0.109 0.891 8 C -0.167 4.167 9 N -0.484 5.484 10 Si 0.744 3.256 11 H -0.190 1.190 12 H -0.205 1.205 13 H -0.202 1.202 14 C 0.066 3.934 15 C -0.217 4.217 16 C -0.060 4.060 17 C -0.192 4.192 18 N -0.049 5.049 19 N -0.195 5.195 20 C -0.077 4.077 21 C -0.074 4.074 22 N -0.314 5.314 23 C -0.027 4.027 24 H 0.070 0.930 25 H 0.069 0.931 26 H 0.066 0.934 27 H 0.076 0.924 28 H 0.078 0.922 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.125 0.875 32 H 0.076 0.924 33 H 0.082 0.918 34 H 0.155 0.845 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.095 0.905 38 H 0.052 0.948 39 H 0.159 0.841 40 H 0.063 0.937 41 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -1.799 3.385 5.394 6.618 hybrid contribution 1.588 1.490 -1.793 2.820 sum -0.211 4.875 3.602 6.065 Atomic orbital electron populations 1.21751 0.96624 1.00662 1.01489 1.21417 0.95018 0.97651 1.01577 1.21897 0.97548 0.95576 1.01523 1.21600 0.91661 0.83593 1.03842 1.42354 1.55039 1.11699 1.00327 1.19495 1.43128 0.95627 0.86187 0.89082 1.25391 0.93824 0.96864 1.00615 1.70035 1.31662 1.14688 1.31969 0.86002 0.78408 0.79465 0.81720 1.18984 1.20515 1.20173 1.20321 0.92598 0.91687 0.88842 1.21454 1.04944 0.97494 0.97818 1.20009 0.97252 0.95453 0.93275 1.21472 1.07018 0.95519 0.95176 1.72473 1.07719 1.06976 1.17748 1.72764 1.24551 1.28681 0.93458 1.19972 0.99178 0.95789 0.92742 1.21991 0.96884 0.94236 0.94239 1.60624 1.61985 1.06694 1.02066 1.20648 0.97424 0.92615 0.92017 0.92996 0.93134 0.93426 0.92396 0.92239 0.92521 0.92478 0.87473 0.92428 0.91771 0.84496 0.90791 0.90806 0.90484 0.94777 0.84120 0.93745 0.89431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.13 9.91 37.16 0.37 -1.76 16 2 C -0.12 -2.00 5.93 -26.73 -0.16 -2.16 16 3 C -0.13 -2.58 5.54 -26.73 -0.15 -2.72 16 4 C 0.12 2.72 4.97 -4.04 -0.02 2.70 16 5 N -0.40 -10.06 2.64 -114.91 -0.30 -10.36 16 6 C -0.32 -7.87 8.42 -15.07 -0.13 -8.00 16 7 H 0.09 2.22 7.10 -52.49 -0.37 1.85 16 8 C 0.04 0.99 4.96 -17.45 -0.09 0.90 16 9 N -0.85 -21.70 11.31 55.49 0.63 -21.07 16 10 Si 0.92 18.87 29.61 -169.99 -5.03 13.84 16 11 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 12 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 13 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 14 C 0.31 7.58 7.38 -154.83 -1.14 6.43 16 15 C -0.18 -4.02 9.01 -38.92 -0.35 -4.37 16 16 C -0.05 -0.98 5.79 -104.65 -0.61 -1.58 16 17 C -0.04 -0.82 6.74 -82.39 -0.55 -1.38 16 18 N -0.20 -4.70 11.39 33.58 0.38 -4.32 16 19 N -0.34 -8.27 10.42 31.23 0.33 -7.95 16 20 C -0.04 -0.58 6.21 -27.92 -0.17 -0.75 16 21 C 0.06 0.71 6.56 -3.73 -0.02 0.68 16 22 N -0.68 -8.87 6.88 -115.24 -0.79 -9.67 16 23 C 0.10 1.54 6.39 -5.25 -0.03 1.50 16 24 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 25 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 28 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 30 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 31 H 0.11 2.65 5.33 -51.93 -0.28 2.37 16 32 H 0.06 1.38 7.54 -51.93 -0.39 0.99 16 33 H 0.27 6.50 8.32 -40.82 -0.34 6.16 16 34 H 0.14 2.92 6.74 -52.48 -0.35 2.56 16 35 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 36 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 37 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.03 0.43 8.05 -51.93 -0.42 0.01 16 39 H 0.34 3.36 8.90 -39.29 -0.35 3.01 16 40 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.09 1.23 8.14 -51.92 -0.42 0.80 16 LS Contribution 331.08 15.07 4.99 4.99 Total: -1.00 -28.31 331.08 -9.24 -37.55 By element: Atomic # 1 Polarization: 13.86 SS G_CDS: -6.37 Total: 7.49 kcal Atomic # 6 Polarization: -7.45 SS G_CDS: -3.06 Total: -10.51 kcal Atomic # 7 Polarization: -53.60 SS G_CDS: 0.24 Total: -53.36 kcal Atomic # 14 Polarization: 18.87 SS G_CDS: -5.03 Total: 13.84 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -28.31 -9.24 -37.55 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167132293.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.849 kcal (2) G-P(sol) polarization free energy of solvation -28.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.549 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds