Wall clock time and date at job start Mon Mar 30 2020 02:12:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.46869 * 2 1 4 4 C 1.52998 * 109.46869 * 180.02562 * 3 2 1 5 5 N 1.46507 * 109.47070 * 180.02562 * 4 3 2 6 6 C 1.36899 * 120.00056 * 270.00267 * 5 4 3 7 7 H 1.08001 * 119.99922 * 145.55099 * 6 5 4 8 8 C 1.38820 * 120.00187 * 325.55726 * 6 5 4 9 9 N 1.31562 * 119.99800 * 337.48821 * 8 6 5 10 10 Si 1.86799 * 120.00333 * 157.49279 * 8 6 5 11 11 H 1.48505 * 109.47047 * 359.97438 * 10 8 6 12 12 H 1.48501 * 109.47464 * 119.99518 * 10 8 6 13 13 H 1.48496 * 109.46856 * 239.99892 * 10 8 6 14 14 C 1.38878 * 119.99723 * 90.00356 * 5 4 3 15 15 C 1.39549 * 120.25350 * 171.30084 * 14 5 4 16 16 C 1.38704 * 117.91244 * 179.97438 * 15 14 5 17 17 C 1.38249 * 118.35818 * 359.87033 * 16 15 14 18 18 N 1.32311 * 119.66520 * 0.21488 * 17 16 15 19 19 N 1.28208 * 122.47757 * 359.83940 * 18 17 16 20 20 C 1.50689 * 121.35786 * 180.44350 * 17 16 15 21 21 C 1.52930 * 109.85509 * 342.77185 * 20 17 16 22 22 N 1.47132 * 108.68797 * 50.64871 * 21 20 17 23 23 C 1.46780 * 110.26914 * 288.72259 * 22 21 20 24 24 H 1.08997 * 109.47180 * 299.99234 * 1 2 3 25 25 H 1.09001 * 109.47429 * 59.99975 * 1 2 3 26 26 H 1.09005 * 109.46621 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.46809 * 240.00683 * 2 1 3 28 28 H 1.08999 * 109.47731 * 120.00734 * 2 1 3 29 29 H 1.09004 * 109.46847 * 60.00706 * 3 2 1 30 30 H 1.08997 * 109.47579 * 300.00306 * 3 2 1 31 31 H 1.08997 * 109.47180 * 60.00765 * 4 3 2 32 32 H 1.09003 * 109.47891 * 300.00263 * 4 3 2 33 33 H 0.97000 * 120.00395 * 175.83704 * 9 8 6 34 34 H 1.08003 * 121.04123 * 359.94387 * 15 14 5 35 35 H 1.09001 * 109.40778 * 102.88507 * 20 17 16 36 36 H 1.08994 * 109.40534 * 222.65223 * 20 17 16 37 37 H 1.09007 * 109.59969 * 170.41236 * 21 20 17 38 38 H 1.08998 * 109.59929 * 290.72890 * 21 20 17 39 39 H 1.00896 * 111.00373 * 165.29871 * 22 21 20 40 40 H 1.08997 * 109.37092 * 291.94282 * 23 22 21 41 41 H 1.09008 * 109.29568 * 172.47708 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4425 -0.0006 5 7 4.0582 2.8238 0.0000 6 6 4.2859 3.4699 -1.1853 7 1 4.0996 4.5306 -1.2666 8 6 4.7559 2.7617 -2.2828 9 7 5.3928 1.6239 -2.1078 10 14 4.4843 3.4241 -4.0081 11 1 3.7467 4.7110 -3.9339 12 1 5.7971 3.6429 -4.6669 13 1 3.6925 2.4450 -4.7953 14 6 4.2903 3.4777 1.2030 15 6 4.9233 4.7213 1.2167 16 6 5.1301 5.3312 2.4451 17 6 4.6971 4.6776 3.5839 18 7 4.1067 3.4983 3.4776 19 7 3.9118 2.9254 2.3474 20 6 4.8782 5.2827 4.9520 21 6 5.9243 6.3968 4.8929 22 7 5.5765 7.3123 3.7949 23 6 5.8171 6.6665 2.4989 24 1 -0.3633 0.5137 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 1.6766 1.9563 0.8901 30 1 1.6766 1.9564 -0.8899 31 1 3.9329 0.9290 -0.8909 32 1 3.9338 0.9285 0.8891 33 1 5.6681 1.0990 -2.8757 34 1 5.2426 5.1937 0.2994 35 1 3.9290 5.6951 5.2942 36 1 5.2089 4.5119 5.6480 37 1 5.9306 6.9428 5.8363 38 1 6.9089 5.9647 4.7139 39 1 6.0906 8.1773 3.8687 40 1 6.8889 6.5268 2.3581 41 1 5.4313 7.3028 1.7023 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167132293.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:34 Heat of formation + Delta-G solvation = 35.241070 kcal Electronic energy + Delta-G solvation = -21678.538084 eV Core-core repulsion = 18592.459323 eV Total energy + Delta-G solvation = -3086.078761 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.78446 -39.05547 -37.86001 -35.71328 -34.37571 -33.48669 -32.64953 -30.71531 -29.55085 -26.98253 -26.41557 -24.78717 -24.03081 -23.02889 -21.92340 -21.16782 -19.18800 -18.55077 -17.79189 -16.85772 -16.62642 -16.43550 -16.11842 -15.79808 -15.46844 -15.16990 -15.08725 -14.63025 -14.27307 -13.85115 -13.75514 -13.53389 -13.34063 -13.16031 -12.96594 -12.89970 -12.69491 -12.44386 -12.19254 -12.05226 -11.97547 -11.81791 -11.50180 -11.39533 -11.28561 -10.65387 -10.41320 -10.15102 -9.42243 -8.90752 -8.27532 -6.00905 0.22259 0.57432 1.41321 1.43598 1.55697 2.18692 2.73418 2.81749 3.11913 3.26321 3.64655 3.81342 3.93313 4.06938 4.11363 4.21884 4.29461 4.33703 4.39715 4.48458 4.51736 4.54501 4.68346 4.84417 4.87425 4.89368 4.93859 4.98522 5.03861 5.16149 5.16886 5.17843 5.29664 5.37170 5.41501 5.44234 5.56372 5.66808 5.90770 6.05249 6.56742 6.60441 7.22665 7.53238 8.36147 8.60889 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.015382 B = 0.005970 C = 0.004574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1819.840244 B = 4688.847625 C = 6119.909426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.114 4.114 3 C -0.113 4.113 4 C 0.124 3.876 5 N -0.425 5.425 6 C -0.333 4.333 7 H 0.089 0.911 8 C 0.003 3.997 9 N -0.885 5.885 10 Si 0.985 3.015 11 H -0.260 1.260 12 H -0.277 1.277 13 H -0.273 1.273 14 C 0.289 3.711 15 C -0.199 4.199 16 C -0.044 4.044 17 C -0.035 4.035 18 N -0.234 5.234 19 N -0.366 5.366 20 C -0.040 4.040 21 C 0.061 3.939 22 N -0.686 5.686 23 C 0.106 3.894 24 H 0.050 0.950 25 H 0.053 0.947 26 H 0.071 0.929 27 H 0.060 0.940 28 H 0.059 0.941 29 H 0.040 0.960 30 H 0.048 0.952 31 H 0.093 0.907 32 H 0.038 0.962 33 H 0.275 0.725 34 H 0.140 0.860 35 H 0.081 0.919 36 H 0.084 0.916 37 H 0.115 0.885 38 H 0.036 0.964 39 H 0.365 0.635 40 H 0.061 0.939 41 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.381 7.065 5.761 9.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.152 4.152 3 C -0.151 4.151 4 C 0.000 4.000 5 N -0.118 5.118 6 C -0.461 4.461 7 H 0.107 0.893 8 C -0.201 4.201 9 N -0.520 5.520 10 Si 0.808 3.192 11 H -0.184 1.184 12 H -0.202 1.202 13 H -0.198 1.198 14 C 0.046 3.954 15 C -0.234 4.234 16 C -0.055 4.055 17 C -0.188 4.188 18 N -0.077 5.077 19 N -0.223 5.223 20 C -0.080 4.080 21 C -0.069 4.069 22 N -0.319 5.319 23 C -0.024 4.024 24 H 0.069 0.931 25 H 0.072 0.928 26 H 0.090 0.910 27 H 0.079 0.921 28 H 0.078 0.922 29 H 0.059 0.941 30 H 0.067 0.933 31 H 0.110 0.890 32 H 0.056 0.944 33 H 0.085 0.915 34 H 0.158 0.842 35 H 0.099 0.901 36 H 0.102 0.898 37 H 0.133 0.867 38 H 0.054 0.946 39 H 0.185 0.815 40 H 0.079 0.921 41 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -1.660 5.362 6.106 8.294 hybrid contribution 1.611 0.981 -1.772 2.588 sum -0.049 6.343 4.334 7.683 Atomic orbital electron populations 1.21705 0.94263 1.02339 1.01638 1.21396 0.97041 0.95074 1.01734 1.21754 0.95536 0.97721 1.00129 1.21480 0.93347 0.83207 1.01936 1.42490 1.56681 1.12091 1.00502 1.19681 1.43783 0.95849 0.86811 0.89295 1.26199 0.93121 0.96989 1.03817 1.70120 1.32847 1.16018 1.33042 0.84998 0.78233 0.78963 0.76980 1.18383 1.20235 1.19806 1.20677 0.93090 0.92654 0.88963 1.21641 1.05414 0.97149 0.99208 1.20559 0.95771 0.97185 0.91943 1.22378 1.04289 0.94322 0.97811 1.72419 1.09265 1.08706 1.17269 1.72699 1.25804 1.29874 0.93937 1.20195 1.00836 0.97086 0.89858 1.22031 0.95522 0.93541 0.95812 1.60557 1.62801 1.07543 1.00994 1.20654 0.97658 0.90236 0.93836 0.93074 0.92778 0.90971 0.92113 0.92204 0.94140 0.93320 0.88972 0.94350 0.91535 0.84246 0.90093 0.89776 0.86695 0.94571 0.81480 0.92081 0.88178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.95 9.91 71.98 0.71 -3.24 16 2 C -0.11 -3.91 5.93 30.59 0.18 -3.73 16 3 C -0.11 -4.78 5.54 30.59 0.17 -4.61 16 4 C 0.12 6.12 4.97 86.38 0.43 6.55 16 5 N -0.42 -22.17 2.64 -517.46 -1.37 -23.54 16 6 C -0.33 -17.17 8.42 84.04 0.71 -16.46 16 7 H 0.09 4.47 7.10 -2.91 -0.02 4.45 16 8 C 0.00 0.13 4.96 84.87 0.42 0.56 16 9 N -0.88 -46.62 11.31 21.65 0.24 -46.38 16 10 Si 0.99 39.07 29.61 68.60 2.03 41.10 16 11 H -0.26 -9.95 7.11 99.48 0.71 -9.25 16 12 H -0.28 -10.78 7.11 99.48 0.71 -10.07 16 13 H -0.27 -10.58 7.11 99.48 0.71 -9.88 16 14 C 0.29 14.76 7.38 133.15 0.98 15.75 16 15 C -0.20 -8.96 9.01 22.70 0.20 -8.75 16 16 C -0.04 -1.69 5.79 -19.89 -0.12 -1.80 16 17 C -0.04 -1.40 6.74 42.49 0.29 -1.11 16 18 N -0.23 -10.94 11.39 -47.66 -0.54 -11.48 16 19 N -0.37 -18.76 10.42 -55.11 -0.57 -19.33 16 20 C -0.04 -1.14 6.21 29.82 0.19 -0.96 16 21 C 0.06 1.26 6.56 86.24 0.57 1.83 16 22 N -0.69 -15.02 6.88 -518.51 -3.57 -18.58 16 23 C 0.11 2.87 6.39 85.44 0.55 3.41 16 24 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 25 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 26 H 0.07 1.66 8.14 -2.38 -0.02 1.64 16 27 H 0.06 2.03 8.14 -2.38 -0.02 2.01 16 28 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 29 H 0.04 1.81 8.14 -2.38 -0.02 1.79 16 30 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 31 H 0.09 4.81 5.33 -2.39 -0.01 4.80 16 32 H 0.04 1.97 7.54 -2.39 -0.02 1.95 16 33 H 0.27 13.48 8.32 -92.71 -0.77 12.71 16 34 H 0.14 6.06 6.74 -2.91 -0.02 6.04 16 35 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 36 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 37 H 0.11 1.62 8.14 -2.38 -0.02 1.60 16 38 H 0.04 0.77 8.05 -2.39 -0.02 0.75 16 39 H 0.36 5.44 8.90 -89.70 -0.80 4.64 16 40 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 41 H 0.10 2.51 8.14 -2.38 -0.02 2.49 16 Total: -1.00 -63.99 331.08 1.73 -62.26 By element: Atomic # 1 Polarization: 28.29 SS G_CDS: 0.23 Total: 28.52 kcal Atomic # 6 Polarization: -17.84 SS G_CDS: 5.28 Total: -12.57 kcal Atomic # 7 Polarization: -113.50 SS G_CDS: -5.81 Total: -119.31 kcal Atomic # 14 Polarization: 39.07 SS G_CDS: 2.03 Total: 41.10 kcal Total: -63.99 1.73 -62.26 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167132293.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.501 kcal (2) G-P(sol) polarization free energy of solvation -63.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.259 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds