Wall clock time and date at job start Mon Mar 30 2020 02:47:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46904 * 110.99942 * 2 1 4 4 C 1.50698 * 109.46867 * 179.97438 * 3 2 1 5 5 C 1.38120 * 120.40129 * 95.23485 * 4 3 2 6 6 C 1.39624 * 118.33732 * 180.24145 * 5 4 3 7 7 N 1.38537 * 120.53527 * 179.80785 * 6 5 4 8 8 C 1.46498 * 120.00172 * 359.71241 * 7 6 5 9 9 H 1.09007 * 109.35207 * 35.18271 * 8 7 6 10 10 C 1.52953 * 109.41532 * 155.00162 * 8 7 6 11 11 C 1.53232 * 109.40786 * 183.70852 * 10 8 7 12 12 C 1.51274 * 108.53527 * 305.37546 * 11 10 8 13 13 C 1.37878 * 120.85140 * 231.32196 * 12 11 10 14 14 N 1.31512 * 119.99844 * 174.53346 * 13 12 11 15 15 Si 1.86800 * 119.99732 * 354.26099 * 13 12 11 16 16 H 1.48497 * 109.47172 * 89.99877 * 15 13 12 17 17 H 1.48506 * 109.46802 * 209.99793 * 15 13 12 18 18 H 1.48499 * 109.46971 * 329.99742 * 15 13 12 19 19 C 1.51271 * 118.29688 * 51.59626 * 12 11 10 20 20 C 1.52962 * 109.41714 * 275.36043 * 8 7 6 21 21 N 1.32995 * 118.93164 * 359.52717 * 6 5 4 22 22 C 1.31748 * 120.68800 * 0.25506 * 21 6 5 23 23 N 1.31779 * 121.83420 * 359.97438 * 22 21 6 24 24 H 1.09008 * 109.46915 * 59.99643 * 1 2 3 25 25 H 1.08997 * 109.47335 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.47033 * 300.00233 * 1 2 3 27 27 H 1.00899 * 110.99870 * 123.95193 * 2 1 3 28 28 H 1.08997 * 109.46766 * 60.00061 * 3 2 1 29 29 H 1.08990 * 109.46891 * 299.99789 * 3 2 1 30 30 H 1.07998 * 120.83148 * 0.02562 * 5 4 3 31 31 H 0.96998 * 120.00359 * 179.72428 * 7 6 5 32 32 H 1.09003 * 109.48268 * 63.73226 * 10 8 7 33 33 H 1.09002 * 109.48433 * 303.69023 * 10 8 7 34 34 H 1.08994 * 109.62966 * 185.66534 * 11 10 8 35 35 H 1.08997 * 109.78109 * 65.17580 * 11 10 8 36 36 H 0.96995 * 120.00111 * 5.33530 * 14 13 12 37 37 H 1.09002 * 109.62868 * 68.11978 * 19 12 11 38 38 H 1.09002 * 109.62366 * 188.68415 * 19 12 11 39 39 H 1.08996 * 109.47836 * 296.27158 * 20 8 7 40 40 H 1.08999 * 109.47790 * 56.29855 * 20 8 7 41 41 H 1.08005 * 119.08230 * 180.02562 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 3.5019 1.3312 0.0006 5 6 4.2040 1.4210 -1.1854 6 6 5.5985 1.3740 -1.1352 7 7 6.3479 1.4561 -2.2976 8 6 5.6775 1.5871 -3.5936 9 1 4.7806 2.1955 -3.4764 10 6 6.6227 2.2617 -4.5890 11 6 5.8906 2.4825 -5.9169 12 6 5.3346 1.1562 -6.3859 13 6 5.5771 0.7000 -7.6642 14 7 5.1780 -0.5014 -8.0204 15 14 6.4659 1.7915 -8.8923 16 1 7.9288 1.5545 -8.7971 17 1 6.0010 1.4715 -10.2659 18 1 6.1745 3.2159 -8.5902 19 6 4.5003 0.3460 -5.4184 20 6 5.2875 0.2000 -4.1069 21 7 6.1961 1.2548 0.0469 22 6 5.4866 1.1770 1.1542 23 7 4.1694 1.2138 1.1398 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8306 -0.5261 0.7814 28 1 1.6459 1.8947 0.8900 29 1 1.6460 1.8947 -0.8899 30 1 3.6871 1.5215 -2.1283 31 1 7.3164 1.4267 -2.2534 32 1 7.4914 1.6244 -4.7546 33 1 6.9472 3.2222 -4.1887 34 1 6.5880 2.8701 -6.6595 35 1 5.0751 3.1917 -5.7750 36 1 4.6461 -1.0363 -7.4108 37 1 3.5581 0.8600 -5.2280 38 1 4.3040 -0.6396 -5.8406 39 1 6.1878 -0.3884 -4.2838 40 1 4.6659 -0.3007 -3.3647 41 1 5.9987 1.0811 2.1003 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167842148.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:13 Heat of formation + Delta-G solvation = 35.159001 kcal Electronic energy + Delta-G solvation = -21406.097881 eV Core-core repulsion = 18320.015561 eV Total energy + Delta-G solvation = -3086.082320 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 2.10 seconds Orbital eigenvalues (eV) -40.80061 -37.93436 -36.43699 -34.90742 -33.00887 -32.01104 -30.33293 -29.80602 -27.64511 -26.82563 -24.19360 -23.82716 -22.20360 -21.93702 -20.95974 -19.69902 -17.89346 -17.05330 -16.60971 -15.87055 -15.23598 -15.20278 -15.05283 -14.45620 -14.26586 -14.04289 -13.86898 -13.64266 -13.09707 -12.45440 -12.32463 -12.29300 -12.19516 -11.92249 -11.74942 -11.31787 -11.03037 -10.74592 -10.65947 -10.35362 -10.18894 -10.14870 -9.76586 -9.61640 -9.29785 -9.07340 -8.63575 -8.59398 -8.36928 -7.79186 -6.49906 -4.09861 1.20701 1.55157 3.26744 3.35221 3.39496 3.54222 3.87635 4.17107 4.40777 4.41133 4.50239 4.88794 5.10820 5.16695 5.17495 5.31859 5.33572 5.39940 5.53988 5.66542 5.71369 5.73832 5.88649 5.94250 6.28767 6.29859 6.46376 6.54062 6.61875 6.68931 6.75867 6.80276 6.92883 7.03133 7.13923 7.21487 7.24676 7.48382 7.54345 7.83770 7.97119 8.23880 8.45743 8.79938 9.53427 10.87793 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.021399 B = 0.004490 C = 0.003918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.138009 B = 6235.223906 C = 7144.142648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.687 5.687 3 C 0.111 3.889 4 C 0.195 3.805 5 C -0.267 4.267 6 C 0.443 3.557 7 N -0.700 5.700 8 C 0.161 3.839 9 H 0.073 0.927 10 C -0.113 4.113 11 C -0.003 4.003 12 C -0.573 4.573 13 C 0.036 3.964 14 N -0.905 5.905 15 Si 1.063 2.937 16 H -0.285 1.285 17 H -0.288 1.288 18 H -0.283 1.283 19 C 0.005 3.995 20 C -0.117 4.117 21 N -0.589 5.589 22 C 0.333 3.667 23 N -0.573 5.573 24 H 0.067 0.933 25 H 0.070 0.930 26 H 0.022 0.978 27 H 0.347 0.653 28 H 0.051 0.949 29 H 0.090 0.910 30 H 0.144 0.856 31 H 0.402 0.598 32 H 0.058 0.942 33 H 0.039 0.961 34 H 0.033 0.967 35 H 0.014 0.986 36 H 0.273 0.727 37 H 0.008 0.992 38 H 0.039 0.961 39 H 0.053 0.947 40 H 0.035 0.965 41 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.651 4.099 14.565 15.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.318 5.318 3 C -0.019 4.019 4 C 0.054 3.946 5 C -0.296 4.296 6 C 0.198 3.802 7 N -0.329 5.329 8 C 0.057 3.943 9 H 0.091 0.909 10 C -0.152 4.152 11 C -0.042 4.042 12 C -0.591 4.591 13 C -0.169 4.169 14 N -0.541 5.541 15 Si 0.892 3.108 16 H -0.212 1.212 17 H -0.214 1.214 18 H -0.209 1.209 19 C -0.034 4.034 20 C -0.156 4.156 21 N -0.314 5.314 22 C 0.043 3.957 23 N -0.294 5.294 24 H 0.086 0.914 25 H 0.089 0.911 26 H 0.041 0.959 27 H 0.164 0.836 28 H 0.069 0.931 29 H 0.109 0.891 30 H 0.161 0.839 31 H 0.238 0.762 32 H 0.077 0.923 33 H 0.058 0.942 34 H 0.051 0.949 35 H 0.032 0.968 36 H 0.086 0.914 37 H 0.026 0.974 38 H 0.058 0.942 39 H 0.072 0.928 40 H 0.053 0.947 41 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -2.674 3.988 12.955 13.816 hybrid contribution -0.696 0.192 1.770 1.912 sum -3.370 4.180 14.725 15.673 Atomic orbital electron populations 1.22213 0.87126 1.02186 1.00549 1.60357 1.07968 1.12955 1.50501 1.20803 0.88116 0.90919 1.02045 1.21024 0.95923 0.89660 0.88004 1.22037 0.93657 1.12933 1.00934 1.18651 0.88649 0.86229 0.86720 1.45187 1.08900 1.75595 1.03217 1.21160 0.95689 0.98034 0.79384 0.90921 1.21875 0.98389 0.97726 0.97196 1.19570 0.95271 0.97319 0.91995 1.21001 1.35136 1.04185 0.98818 1.25763 0.97081 0.97086 0.97019 1.70787 1.33992 1.08692 1.40582 0.83630 0.76256 0.75073 0.75873 1.21205 1.21382 1.20931 1.19479 0.94409 0.97744 0.91717 1.22101 1.00338 0.94574 0.98629 1.67956 1.41737 1.23626 0.98115 1.24456 0.86528 0.89151 0.95565 1.68132 1.10225 1.21174 1.29832 0.91377 0.91147 0.95918 0.83568 0.93098 0.89144 0.83869 0.76235 0.92279 0.94211 0.94860 0.96781 0.91431 0.97381 0.94237 0.92820 0.94676 0.79398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 10.70 60.06 0.64 0.90 16 2 N -0.69 -7.95 6.84 -122.42 -0.84 -8.79 16 3 C 0.11 1.31 6.04 -4.97 -0.03 1.28 16 4 C 0.20 2.81 6.33 -82.33 -0.52 2.29 16 5 C -0.27 -4.21 8.56 -39.11 -0.33 -4.55 16 6 C 0.44 7.29 7.68 -154.78 -1.19 6.10 16 7 N -0.70 -11.42 5.22 -53.82 -0.28 -11.71 16 8 C 0.16 2.90 2.05 -67.98 -0.14 2.76 16 9 H 0.07 1.33 6.50 -51.92 -0.34 0.99 16 10 C -0.11 -2.13 5.40 -26.64 -0.14 -2.27 16 11 C 0.00 -0.07 5.55 -27.48 -0.15 -0.22 16 12 C -0.57 -14.35 5.50 -98.92 -0.54 -14.89 16 13 C 0.04 0.97 5.46 -17.82 -0.10 0.87 16 14 N -0.90 -26.01 13.66 55.43 0.76 -25.26 16 15 Si 1.06 23.95 27.47 -169.99 -4.67 19.28 16 16 H -0.29 -6.23 7.11 56.52 0.40 -5.83 16 17 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 18 H -0.28 -5.97 6.73 56.52 0.38 -5.59 16 19 C 0.00 0.11 5.99 -27.26 -0.16 -0.05 16 20 C -0.12 -2.40 5.48 -26.41 -0.14 -2.55 16 21 N -0.59 -9.28 10.47 -13.81 -0.14 -9.42 16 22 C 0.33 4.60 12.28 -92.21 -1.13 3.47 16 23 N -0.57 -8.19 10.37 -10.88 -0.11 -8.30 16 24 H 0.07 0.61 8.14 -51.92 -0.42 0.18 16 25 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.02 0.18 8.14 -51.93 -0.42 -0.24 16 27 H 0.35 3.91 8.81 -39.29 -0.35 3.56 16 28 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.09 1.01 8.06 -51.93 -0.42 0.59 16 30 H 0.14 2.30 6.34 -52.49 -0.33 1.97 16 31 H 0.40 6.14 8.72 -40.82 -0.36 5.78 16 32 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 33 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.03 0.71 5.02 -51.93 -0.26 0.45 16 35 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 36 H 0.27 7.80 6.36 -40.82 -0.26 7.54 16 37 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 38 H 0.04 1.00 5.80 -51.93 -0.30 0.70 16 39 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 40 H 0.03 0.69 7.78 -51.93 -0.40 0.29 16 41 H 0.19 1.89 8.06 -52.48 -0.42 1.46 16 LS Contribution 326.73 15.07 4.92 4.92 Total: -1.00 -28.47 326.73 -10.38 -38.84 By element: Atomic # 1 Polarization: 13.36 SS G_CDS: -6.06 Total: 7.30 kcal Atomic # 6 Polarization: -2.91 SS G_CDS: -3.95 Total: -6.86 kcal Atomic # 7 Polarization: -62.86 SS G_CDS: -0.62 Total: -63.48 kcal Atomic # 14 Polarization: 23.95 SS G_CDS: -4.67 Total: 19.28 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -28.47 -10.38 -38.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167842148.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.002 kcal (2) G-P(sol) polarization free energy of solvation -28.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.843 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.10 seconds