Wall clock time and date at job start Mon Mar 30 2020 02:47:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46904 * 110.99942 * 2 1 4 4 C 1.50698 * 109.46867 * 179.97438 * 3 2 1 5 5 C 1.38120 * 120.40129 * 95.23485 * 4 3 2 6 6 C 1.39624 * 118.33732 * 180.24145 * 5 4 3 7 7 N 1.38537 * 120.53527 * 179.80785 * 6 5 4 8 8 C 1.46498 * 120.00172 * 359.71241 * 7 6 5 9 9 H 1.09007 * 109.35207 * 35.18271 * 8 7 6 10 10 C 1.52953 * 109.41532 * 155.00162 * 8 7 6 11 11 C 1.53232 * 109.40786 * 183.70852 * 10 8 7 12 12 C 1.51274 * 108.53527 * 305.37546 * 11 10 8 13 13 C 1.37878 * 120.85140 * 231.32196 * 12 11 10 14 14 N 1.31512 * 119.99844 * 174.53346 * 13 12 11 15 15 Si 1.86800 * 119.99732 * 354.26099 * 13 12 11 16 16 H 1.48497 * 109.47172 * 89.99877 * 15 13 12 17 17 H 1.48506 * 109.46802 * 209.99793 * 15 13 12 18 18 H 1.48499 * 109.46971 * 329.99742 * 15 13 12 19 19 C 1.51271 * 118.29688 * 51.59626 * 12 11 10 20 20 C 1.52962 * 109.41714 * 275.36043 * 8 7 6 21 21 N 1.32995 * 118.93164 * 359.52717 * 6 5 4 22 22 C 1.31748 * 120.68800 * 0.25506 * 21 6 5 23 23 N 1.31779 * 121.83420 * 359.97438 * 22 21 6 24 24 H 1.09008 * 109.46915 * 59.99643 * 1 2 3 25 25 H 1.08997 * 109.47335 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.47033 * 300.00233 * 1 2 3 27 27 H 1.00899 * 110.99870 * 123.95193 * 2 1 3 28 28 H 1.08997 * 109.46766 * 60.00061 * 3 2 1 29 29 H 1.08990 * 109.46891 * 299.99789 * 3 2 1 30 30 H 1.07998 * 120.83148 * 0.02562 * 5 4 3 31 31 H 0.96998 * 120.00359 * 179.72428 * 7 6 5 32 32 H 1.09003 * 109.48268 * 63.73226 * 10 8 7 33 33 H 1.09002 * 109.48433 * 303.69023 * 10 8 7 34 34 H 1.08994 * 109.62966 * 185.66534 * 11 10 8 35 35 H 1.08997 * 109.78109 * 65.17580 * 11 10 8 36 36 H 0.96995 * 120.00111 * 5.33530 * 14 13 12 37 37 H 1.09002 * 109.62868 * 68.11978 * 19 12 11 38 38 H 1.09002 * 109.62366 * 188.68415 * 19 12 11 39 39 H 1.08996 * 109.47836 * 296.27158 * 20 8 7 40 40 H 1.08999 * 109.47790 * 56.29855 * 20 8 7 41 41 H 1.08005 * 119.08230 * 180.02562 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 3.5019 1.3312 0.0006 5 6 4.2040 1.4210 -1.1854 6 6 5.5985 1.3740 -1.1352 7 7 6.3479 1.4561 -2.2976 8 6 5.6775 1.5871 -3.5936 9 1 4.7806 2.1955 -3.4764 10 6 6.6227 2.2617 -4.5890 11 6 5.8906 2.4825 -5.9169 12 6 5.3346 1.1562 -6.3859 13 6 5.5771 0.7000 -7.6642 14 7 5.1780 -0.5014 -8.0204 15 14 6.4659 1.7915 -8.8923 16 1 7.9288 1.5545 -8.7971 17 1 6.0010 1.4715 -10.2659 18 1 6.1745 3.2159 -8.5902 19 6 4.5003 0.3460 -5.4184 20 6 5.2875 0.2000 -4.1069 21 7 6.1961 1.2548 0.0469 22 6 5.4866 1.1770 1.1542 23 7 4.1694 1.2138 1.1398 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8306 -0.5261 0.7814 28 1 1.6459 1.8947 0.8900 29 1 1.6460 1.8947 -0.8899 30 1 3.6871 1.5215 -2.1283 31 1 7.3164 1.4267 -2.2534 32 1 7.4914 1.6244 -4.7546 33 1 6.9472 3.2222 -4.1887 34 1 6.5880 2.8701 -6.6595 35 1 5.0751 3.1917 -5.7750 36 1 4.6461 -1.0363 -7.4108 37 1 3.5581 0.8600 -5.2280 38 1 4.3040 -0.6396 -5.8406 39 1 6.1878 -0.3884 -4.2838 40 1 4.6659 -0.3007 -3.3647 41 1 5.9987 1.0811 2.1003 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167842148.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:11 Heat of formation + Delta-G solvation = 17.033908 kcal Electronic energy + Delta-G solvation = -21406.883844 eV Core-core repulsion = 18320.015561 eV Total energy + Delta-G solvation = -3086.868283 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.96380 -39.45200 -37.42191 -36.39165 -34.35563 -33.48291 -31.68297 -31.54063 -28.74931 -28.34010 -25.31554 -24.88596 -23.88750 -23.33963 -22.39425 -21.32552 -19.17080 -18.42891 -18.18586 -16.86616 -16.71766 -16.39991 -16.16884 -15.68199 -15.56356 -15.36721 -15.18058 -14.86106 -14.74895 -14.19971 -13.81768 -13.47945 -13.24268 -13.10098 -12.99437 -12.73049 -12.59348 -12.39365 -12.11043 -11.96795 -11.90384 -11.57171 -11.31997 -11.23173 -10.80339 -10.52659 -10.28755 -10.21959 -9.48508 -9.09896 -8.56713 -6.15273 0.07699 0.36110 1.54245 1.60727 1.77376 1.99439 2.57544 2.82462 3.12701 3.17888 3.40850 3.52323 3.71474 3.88507 4.06618 4.15086 4.21204 4.32099 4.50476 4.54864 4.60144 4.62982 4.68343 4.78303 4.82152 4.88333 4.93924 4.99008 5.03330 5.11495 5.20292 5.26419 5.41204 5.48076 5.68735 5.76800 5.89034 6.03668 6.24436 6.26183 6.31889 6.61460 6.76039 7.30450 7.55645 8.80527 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.021399 B = 0.004490 C = 0.003918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.138009 B = 6235.223906 C = 7144.142648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.702 5.702 3 C 0.114 3.886 4 C 0.198 3.802 5 C -0.283 4.283 6 C 0.430 3.570 7 N -0.698 5.698 8 C 0.176 3.824 9 H 0.075 0.925 10 C -0.107 4.107 11 C -0.009 4.009 12 C -0.575 4.575 13 C -0.019 4.019 14 N -0.946 5.946 15 Si 1.098 2.902 16 H -0.274 1.274 17 H -0.297 1.297 18 H -0.256 1.256 19 C 0.000 4.000 20 C -0.103 4.103 21 N -0.599 5.599 22 C 0.331 3.669 23 N -0.574 5.574 24 H 0.067 0.933 25 H 0.078 0.922 26 H 0.036 0.964 27 H 0.347 0.653 28 H 0.063 0.937 29 H 0.094 0.906 30 H 0.137 0.863 31 H 0.408 0.592 32 H 0.055 0.945 33 H 0.069 0.931 34 H 0.040 0.960 35 H 0.020 0.980 36 H 0.258 0.742 37 H 0.008 0.992 38 H 0.011 0.989 39 H 0.037 0.963 40 H 0.037 0.963 41 H 0.226 0.774 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.249 5.797 16.411 17.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.334 5.334 3 C -0.016 4.016 4 C 0.056 3.944 5 C -0.312 4.312 6 C 0.186 3.814 7 N -0.328 5.328 8 C 0.072 3.928 9 H 0.093 0.907 10 C -0.145 4.145 11 C -0.047 4.047 12 C -0.594 4.594 13 C -0.217 4.217 14 N -0.585 5.585 15 Si 0.922 3.078 16 H -0.199 1.199 17 H -0.224 1.224 18 H -0.181 1.181 19 C -0.038 4.038 20 C -0.142 4.142 21 N -0.325 5.325 22 C 0.042 3.958 23 N -0.295 5.295 24 H 0.086 0.914 25 H 0.096 0.904 26 H 0.055 0.945 27 H 0.165 0.835 28 H 0.081 0.919 29 H 0.113 0.887 30 H 0.154 0.846 31 H 0.244 0.756 32 H 0.074 0.926 33 H 0.088 0.912 34 H 0.059 0.941 35 H 0.039 0.961 36 H 0.070 0.930 37 H 0.026 0.974 38 H 0.030 0.970 39 H 0.056 0.944 40 H 0.056 0.944 41 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -2.271 5.704 14.850 16.070 hybrid contribution -0.916 -0.368 1.342 1.666 sum -3.188 5.336 16.192 17.345 Atomic orbital electron populations 1.22255 0.85603 1.02945 1.01156 1.60371 1.09513 1.12761 1.50773 1.20824 0.86537 0.91384 1.02839 1.21415 0.97165 0.88238 0.87581 1.22072 0.93610 1.14255 1.01275 1.18797 0.88942 0.86666 0.86999 1.44877 1.09040 1.76318 1.02549 1.20804 0.95863 0.95998 0.80179 0.90734 1.21741 0.97791 0.99277 0.95716 1.19621 0.95859 0.95436 0.93817 1.21576 1.33766 1.05436 0.98609 1.27017 0.97891 0.97393 0.99375 1.70900 1.36453 1.10301 1.40795 0.83195 0.75980 0.75102 0.73549 1.19939 1.22423 1.18081 1.19481 0.94894 0.96206 0.93251 1.21884 0.99018 0.96345 0.96997 1.68010 1.42148 1.24079 0.98260 1.25245 0.86592 0.87631 0.96317 1.68248 1.10526 1.21076 1.29603 0.91445 0.90374 0.94537 0.83538 0.91869 0.88739 0.84568 0.75557 0.92640 0.91212 0.94144 0.96110 0.92980 0.97408 0.97006 0.94443 0.94408 0.75839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 10.70 127.69 1.37 1.84 16 2 N -0.70 -15.22 6.84 -541.23 -3.70 -18.93 16 3 C 0.11 2.49 6.04 85.56 0.52 3.00 16 4 C 0.20 5.36 6.33 42.42 0.27 5.63 16 5 C -0.28 -8.60 8.56 22.58 0.19 -8.40 16 6 C 0.43 13.50 7.68 133.16 1.02 14.52 16 7 N -0.70 -21.62 5.22 -324.20 -1.69 -23.31 16 8 C 0.18 6.11 2.05 44.96 0.09 6.21 16 9 H 0.07 2.61 6.50 -2.38 -0.02 2.59 16 10 C -0.11 -3.76 5.40 30.66 0.17 -3.59 16 11 C -0.01 -0.38 5.55 30.11 0.17 -0.21 16 12 C -0.57 -28.83 5.50 -16.17 -0.09 -28.92 16 13 C -0.02 -1.01 5.46 84.66 0.46 -0.55 16 14 N -0.95 -56.30 13.66 21.45 0.29 -56.01 16 15 Si 1.10 47.75 27.47 68.60 1.88 49.63 16 16 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 17 H -0.30 -13.31 7.11 99.48 0.71 -12.61 16 18 H -0.26 -9.92 6.73 99.48 0.67 -9.25 16 19 C 0.00 0.00 5.99 30.25 0.18 0.18 16 20 C -0.10 -4.23 5.48 30.80 0.17 -4.06 16 21 N -0.60 -17.64 10.47 -197.62 -2.07 -19.71 16 22 C 0.33 8.29 12.28 180.90 2.22 10.52 16 23 N -0.57 -15.11 10.37 -188.34 -1.95 -17.06 16 24 H 0.07 1.10 8.14 -2.38 -0.02 1.08 16 25 H 0.08 1.14 8.14 -2.39 -0.02 1.13 16 26 H 0.04 0.50 8.14 -2.38 -0.02 0.48 16 27 H 0.35 7.30 8.81 -89.69 -0.79 6.51 16 28 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 29 H 0.09 1.97 8.06 -2.39 -0.02 1.95 16 30 H 0.14 4.27 6.34 -2.91 -0.02 4.26 16 31 H 0.41 11.68 8.72 -92.71 -0.81 10.87 16 32 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 33 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 34 H 0.04 1.62 5.02 -2.39 -0.01 1.61 16 35 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 36 H 0.26 15.59 6.36 -92.71 -0.59 15.00 16 37 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 38 H 0.01 0.61 5.80 -2.39 -0.01 0.60 16 39 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 40 H 0.04 1.50 7.78 -2.39 -0.02 1.49 16 41 H 0.23 3.71 8.06 -2.91 -0.02 3.69 16 Total: -1.00 -61.49 326.73 -0.91 -62.39 By element: Atomic # 1 Polarization: 27.24 SS G_CDS: -0.40 Total: 26.83 kcal Atomic # 6 Polarization: -10.57 SS G_CDS: 6.74 Total: -3.84 kcal Atomic # 7 Polarization: -125.90 SS G_CDS: -9.13 Total: -135.03 kcal Atomic # 14 Polarization: 47.75 SS G_CDS: 1.88 Total: 49.63 kcal Total: -61.49 -0.91 -62.39 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167842148.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.426 kcal (2) G-P(sol) polarization free energy of solvation -61.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.392 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds