Wall clock time and date at job start Mon Mar 30 2020 01:40:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00439 * 2 1 4 4 H 1.48499 * 109.47022 * 270.00274 * 3 2 1 5 5 H 1.48502 * 109.46769 * 29.99782 * 3 2 1 6 6 H 1.48495 * 109.47280 * 149.99957 * 3 2 1 7 7 C 1.37887 * 119.99907 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99631 * 359.97438 * 7 2 1 9 9 C 1.50696 * 120.00079 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.47055 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.47127 * 179.97438 * 10 9 7 12 12 N 1.46496 * 109.46995 * 180.02562 * 11 10 9 13 13 C 1.38527 * 119.99807 * 180.02562 * 12 11 10 14 14 C 1.39690 * 120.48615 * 359.97438 * 13 12 11 15 15 C 1.38084 * 118.48916 * 179.97438 * 14 13 12 16 16 N 1.32519 * 119.29179 * 0.02562 * 15 14 13 17 17 C 1.32463 * 120.93522 * 359.97438 * 16 15 14 18 18 N 1.38396 * 119.17802 * 180.02562 * 17 16 15 19 19 C 1.48537 * 110.99982 * 242.60288 * 18 17 16 20 20 C 1.54934 * 103.22768 * 159.71963 * 19 18 17 21 21 C 1.54601 * 102.92384 * 322.58554 * 20 19 18 22 22 C 1.47896 * 111.00002 * 359.97438 * 18 17 16 23 23 N 1.32473 * 121.64547 * 359.74607 * 17 16 15 24 24 H 0.96999 * 119.99682 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.47324 * 59.99304 * 9 7 2 26 26 H 1.09004 * 109.47043 * 299.99672 * 9 7 2 27 27 H 1.09001 * 109.46832 * 59.99966 * 10 9 7 28 28 H 1.08993 * 109.47194 * 299.99487 * 10 9 7 29 29 H 1.09001 * 109.46801 * 300.00272 * 11 10 9 30 30 H 1.09001 * 109.46998 * 59.99868 * 11 10 9 31 31 H 0.96998 * 120.00192 * 359.97438 * 12 11 10 32 32 H 1.07997 * 120.75318 * 0.02562 * 14 13 12 33 33 H 1.07999 * 120.35590 * 179.97438 * 15 14 13 34 34 H 1.08995 * 110.66947 * 278.15781 * 19 18 17 35 35 H 1.09002 * 110.66249 * 41.29004 * 19 18 17 36 36 H 1.09001 * 110.72754 * 204.23307 * 20 19 18 37 37 H 1.08996 * 110.87808 * 81.01810 * 20 19 18 38 38 H 1.08998 * 110.31232 * 263.04159 * 21 20 19 39 39 H 1.09003 * 110.30540 * 140.87024 * 21 20 19 40 40 H 1.08997 * 109.91959 * 333.50878 * 22 18 17 41 41 H 1.09000 * 109.91807 * 94.80621 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4400 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1942 0.0000 10 6 4.0214 -2.6367 -0.0001 11 6 5.5515 -2.6368 -0.0001 12 7 6.0397 -4.0180 -0.0009 13 6 7.4017 -4.2711 -0.0005 14 6 8.3184 -3.2171 0.0000 15 6 9.6664 -3.5167 0.0009 16 7 10.0486 -4.7855 0.0007 17 6 9.1571 -5.7653 0.0002 18 7 9.5967 -7.0775 0.0005 19 6 9.1616 -7.7850 -1.2309 20 6 10.1384 -8.9847 -1.3145 21 6 11.4736 -8.3782 -0.8248 22 6 11.0743 -7.1415 0.0009 23 7 7.8552 -5.5203 0.0048 24 1 -0.4849 0.8401 0.0004 25 1 3.8746 -0.6809 0.8905 26 1 3.8752 -0.6798 -0.8895 27 1 3.6584 -3.1503 -0.8903 28 1 3.6579 -3.1507 0.8896 29 1 5.9148 -2.1228 -0.8901 30 1 5.9149 -2.1230 0.8899 31 1 5.4094 -4.7552 -0.0009 32 1 7.9806 -2.1914 0.0006 33 1 10.4013 -2.7253 0.0009 34 1 8.1332 -8.1324 -1.1319 35 1 9.2687 -7.1402 -2.1032 36 1 10.2290 -9.3376 -2.3418 37 1 9.8180 -9.7931 -0.6573 38 1 12.0892 -8.0829 -1.6745 39 1 12.0078 -9.0942 -0.2002 40 1 11.4851 -6.2413 -0.4563 41 1 11.4414 -7.2431 1.0222 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168427218.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:24 Heat of formation + Delta-G solvation = 59.257800 kcal Electronic energy + Delta-G solvation = -20405.285243 eV Core-core repulsion = 17320.247925 eV Total energy + Delta-G solvation = -3085.037317 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.18936 -38.92050 -36.76586 -34.13199 -33.29731 -32.47065 -31.10875 -29.51342 -29.05166 -27.10718 -24.20957 -23.70105 -22.63567 -21.30990 -20.80147 -20.40250 -18.02869 -17.78090 -16.76919 -16.14612 -16.05438 -15.42293 -15.21549 -14.79366 -14.75539 -14.06505 -14.04690 -13.75056 -13.30498 -12.88354 -12.75489 -12.52384 -12.39644 -12.04334 -11.71155 -11.49769 -11.29140 -11.22680 -10.95638 -10.85181 -10.59256 -10.31621 -10.14268 -9.93562 -9.79643 -9.30323 -9.22009 -8.65625 -8.61533 -8.03753 -6.11536 -4.10876 1.08638 1.42950 2.85605 3.25180 3.33249 3.35031 3.43457 3.89457 4.15857 4.32188 4.38062 4.54535 4.65662 4.76258 5.01964 5.03466 5.16962 5.21721 5.26526 5.35232 5.44497 5.47788 5.50814 5.55255 5.59658 5.72048 5.77150 5.80940 5.88736 6.05691 6.30464 6.31099 6.34562 6.59178 6.66619 7.07142 7.12378 7.26090 7.30397 7.64562 7.69334 8.32808 8.44613 8.92505 9.49826 11.01738 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.043143 B = 0.002745 C = 0.002612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 648.845834 B =10197.996059 C =10715.603354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.066 3.934 3 Si 0.881 3.119 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.265 1.265 7 C -0.524 4.524 8 H 0.072 0.928 9 C -0.009 4.009 10 C -0.113 4.113 11 C 0.118 3.882 12 N -0.702 5.702 13 C 0.460 3.540 14 C -0.317 4.317 15 C 0.192 3.808 16 N -0.598 5.598 17 C 0.522 3.478 18 N -0.449 5.449 19 C 0.056 3.944 20 C -0.125 4.125 21 C -0.133 4.133 22 C 0.040 3.960 23 N -0.588 5.588 24 H 0.264 0.736 25 H 0.019 0.981 26 H 0.014 0.986 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.408 0.592 32 H 0.142 0.858 33 H 0.163 0.837 34 H 0.095 0.905 35 H 0.051 0.949 36 H 0.077 0.923 37 H 0.079 0.921 38 H 0.070 0.930 39 H 0.075 0.925 40 H 0.086 0.914 41 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.406 -12.893 -2.405 26.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.135 4.135 3 Si 0.708 3.292 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.190 1.190 7 C -0.562 4.562 8 H 0.090 0.910 9 C -0.047 4.047 10 C -0.151 4.151 11 C -0.005 4.005 12 N -0.332 5.332 13 C 0.213 3.787 14 C -0.346 4.346 15 C 0.030 3.970 16 N -0.323 5.323 17 C 0.163 3.837 18 N -0.169 5.169 19 C -0.070 4.070 20 C -0.163 4.163 21 C -0.171 4.171 22 C -0.087 4.087 23 N -0.316 5.316 24 H 0.074 0.926 25 H 0.037 0.963 26 H 0.033 0.967 27 H 0.081 0.919 28 H 0.082 0.918 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.244 0.756 32 H 0.160 0.840 33 H 0.181 0.819 34 H 0.114 0.886 35 H 0.069 0.931 36 H 0.096 0.904 37 H 0.097 0.903 38 H 0.089 0.911 39 H 0.093 0.907 40 H 0.104 0.896 41 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 23.258 -13.736 -1.931 27.080 hybrid contribution -0.076 1.966 -0.446 2.017 sum 23.183 -11.770 -2.377 26.108 Atomic orbital electron populations 1.69911 1.06331 1.27009 1.50737 1.25044 0.94766 0.99249 0.94455 0.86762 0.80339 0.83546 0.78530 1.20249 1.21324 1.18966 1.21080 0.89236 0.94580 1.51303 0.90973 1.19495 0.97455 0.91178 0.96592 1.21700 0.90033 1.01216 1.02191 1.21826 0.97084 0.80201 1.01373 1.44864 1.02050 1.09601 1.76725 1.18393 0.86360 0.88206 0.85746 1.22072 0.94665 1.00606 1.17241 1.22637 0.93871 0.92754 0.87694 1.68246 1.38405 1.00715 1.24957 1.20685 0.84601 0.89959 0.88426 1.61247 1.11544 1.07654 1.36485 1.23179 1.00869 0.94393 0.88547 1.22540 0.94431 0.97452 1.01893 1.22460 0.97637 0.97171 0.99841 1.22917 0.84942 0.99100 1.01778 1.67416 1.16027 1.21517 1.26672 0.92630 0.96299 0.96739 0.91872 0.91815 0.91749 0.91718 0.75600 0.83984 0.81942 0.88644 0.93065 0.90442 0.90253 0.91133 0.90652 0.89564 0.89976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.35 13.96 55.43 0.77 -26.58 16 2 C 0.07 1.89 5.47 -17.82 -0.10 1.79 16 3 Si 0.88 21.05 27.47 -169.99 -4.67 16.38 16 4 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.27 -6.00 6.54 56.52 0.37 -5.63 16 7 C -0.52 -14.45 9.66 -34.44 -0.33 -14.78 16 8 H 0.07 2.15 7.99 -52.49 -0.42 1.73 16 9 C -0.01 -0.21 4.04 -27.89 -0.11 -0.32 16 10 C -0.11 -2.02 5.27 -26.73 -0.14 -2.16 16 11 C 0.12 1.72 4.92 -4.04 -0.02 1.70 16 12 N -0.70 -9.88 5.71 -60.28 -0.34 -10.23 16 13 C 0.46 6.73 7.71 -154.84 -1.19 5.54 16 14 C -0.32 -4.05 9.39 -39.10 -0.37 -4.41 16 15 C 0.19 2.27 11.28 -17.31 -0.20 2.07 16 16 N -0.60 -8.05 8.14 -14.02 -0.11 -8.16 16 17 C 0.52 7.52 6.98 -322.89 -2.25 5.27 16 18 N -0.45 -5.56 5.35 -171.46 -0.92 -6.47 16 19 C 0.06 0.57 6.31 -1.90 -0.01 0.56 16 20 C -0.12 -0.91 7.06 -24.87 -0.18 -1.08 16 21 C -0.13 -0.94 6.93 -25.38 -0.18 -1.12 16 22 C 0.04 0.39 6.33 -2.77 -0.02 0.38 16 23 N -0.59 -9.06 10.25 -13.16 -0.13 -9.20 16 24 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 25 H 0.02 0.42 7.20 -51.93 -0.37 0.04 16 26 H 0.01 0.31 7.57 -51.93 -0.39 -0.08 16 27 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 28 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 29 H 0.06 0.89 7.97 -51.93 -0.41 0.48 16 30 H 0.06 0.91 7.97 -51.93 -0.41 0.50 16 31 H 0.41 5.56 8.60 -40.82 -0.35 5.21 16 32 H 0.14 1.60 6.85 -52.49 -0.36 1.24 16 33 H 0.16 1.33 8.06 -52.49 -0.42 0.91 16 34 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.05 0.55 7.99 -51.93 -0.42 0.13 16 36 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 40 H 0.09 0.93 6.46 -51.93 -0.34 0.59 16 41 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 LS Contribution 333.09 15.07 5.02 5.02 Total: -1.00 -31.58 333.09 -11.93 -43.50 By element: Atomic # 1 Polarization: 8.74 SS G_CDS: -6.45 Total: 2.30 kcal Atomic # 6 Polarization: -1.47 SS G_CDS: -5.09 Total: -6.56 kcal Atomic # 7 Polarization: -59.90 SS G_CDS: -0.74 Total: -60.64 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -4.67 Total: 16.38 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -31.58 -11.93 -43.50 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168427218.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.761 kcal (2) G-P(sol) polarization free energy of solvation -31.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.503 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds