Wall clock time and date at job start Mon Mar 30 2020 01:40:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00439 * 2 1 4 4 H 1.48499 * 109.47022 * 270.00274 * 3 2 1 5 5 H 1.48502 * 109.46769 * 29.99782 * 3 2 1 6 6 H 1.48495 * 109.47280 * 149.99957 * 3 2 1 7 7 C 1.37887 * 119.99907 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99631 * 359.97438 * 7 2 1 9 9 C 1.50696 * 120.00079 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.47055 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.47127 * 179.97438 * 10 9 7 12 12 N 1.46496 * 109.46995 * 180.02562 * 11 10 9 13 13 C 1.38527 * 119.99807 * 180.02562 * 12 11 10 14 14 C 1.39690 * 120.48615 * 359.97438 * 13 12 11 15 15 C 1.38084 * 118.48916 * 179.97438 * 14 13 12 16 16 N 1.32519 * 119.29179 * 0.02562 * 15 14 13 17 17 C 1.32463 * 120.93522 * 359.97438 * 16 15 14 18 18 N 1.38396 * 119.17802 * 180.02562 * 17 16 15 19 19 C 1.48537 * 110.99982 * 242.60288 * 18 17 16 20 20 C 1.54934 * 103.22768 * 159.71963 * 19 18 17 21 21 C 1.54601 * 102.92384 * 322.58554 * 20 19 18 22 22 C 1.47896 * 111.00002 * 359.97438 * 18 17 16 23 23 N 1.32473 * 121.64547 * 359.74607 * 17 16 15 24 24 H 0.96999 * 119.99682 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.47324 * 59.99304 * 9 7 2 26 26 H 1.09004 * 109.47043 * 299.99672 * 9 7 2 27 27 H 1.09001 * 109.46832 * 59.99966 * 10 9 7 28 28 H 1.08993 * 109.47194 * 299.99487 * 10 9 7 29 29 H 1.09001 * 109.46801 * 300.00272 * 11 10 9 30 30 H 1.09001 * 109.46998 * 59.99868 * 11 10 9 31 31 H 0.96998 * 120.00192 * 359.97438 * 12 11 10 32 32 H 1.07997 * 120.75318 * 0.02562 * 14 13 12 33 33 H 1.07999 * 120.35590 * 179.97438 * 15 14 13 34 34 H 1.08995 * 110.66947 * 278.15781 * 19 18 17 35 35 H 1.09002 * 110.66249 * 41.29004 * 19 18 17 36 36 H 1.09001 * 110.72754 * 204.23307 * 20 19 18 37 37 H 1.08996 * 110.87808 * 81.01810 * 20 19 18 38 38 H 1.08998 * 110.31232 * 263.04159 * 21 20 19 39 39 H 1.09003 * 110.30540 * 140.87024 * 21 20 19 40 40 H 1.08997 * 109.91959 * 333.50878 * 22 18 17 41 41 H 1.09000 * 109.91807 * 94.80621 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4400 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1942 0.0000 10 6 4.0214 -2.6367 -0.0001 11 6 5.5515 -2.6368 -0.0001 12 7 6.0397 -4.0180 -0.0009 13 6 7.4017 -4.2711 -0.0005 14 6 8.3184 -3.2171 0.0000 15 6 9.6664 -3.5167 0.0009 16 7 10.0486 -4.7855 0.0007 17 6 9.1571 -5.7653 0.0002 18 7 9.5967 -7.0775 0.0005 19 6 9.1616 -7.7850 -1.2309 20 6 10.1384 -8.9847 -1.3145 21 6 11.4736 -8.3782 -0.8248 22 6 11.0743 -7.1415 0.0009 23 7 7.8552 -5.5203 0.0048 24 1 -0.4849 0.8401 0.0004 25 1 3.8746 -0.6809 0.8905 26 1 3.8752 -0.6798 -0.8895 27 1 3.6584 -3.1503 -0.8903 28 1 3.6579 -3.1507 0.8896 29 1 5.9148 -2.1228 -0.8901 30 1 5.9149 -2.1230 0.8899 31 1 5.4094 -4.7552 -0.0009 32 1 7.9806 -2.1914 0.0006 33 1 10.4013 -2.7253 0.0009 34 1 8.1332 -8.1324 -1.1319 35 1 9.2687 -7.1402 -2.1032 36 1 10.2290 -9.3376 -2.3418 37 1 9.8180 -9.7931 -0.6573 38 1 12.0892 -8.0829 -1.6745 39 1 12.0078 -9.0942 -0.2002 40 1 11.4851 -6.2413 -0.4563 41 1 11.4414 -7.2431 1.0222 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168427218.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:23 Heat of formation + Delta-G solvation = 40.227765 kcal Electronic energy + Delta-G solvation = -20406.110447 eV Core-core repulsion = 17320.247925 eV Total energy + Delta-G solvation = -3085.862522 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.15321 -39.77171 -37.90441 -35.71521 -34.40384 -33.88975 -32.49957 -30.40162 -29.88519 -28.68179 -25.35386 -24.83881 -23.81943 -22.24504 -21.93893 -21.56420 -19.11328 -18.95751 -18.55802 -17.04256 -16.92035 -16.55218 -16.36967 -16.18578 -15.87439 -15.54463 -14.91552 -14.77488 -14.60957 -14.25292 -13.87324 -13.74887 -13.47331 -13.23325 -12.83637 -12.77827 -12.34456 -12.22660 -12.15014 -11.83450 -11.76187 -11.70543 -11.56062 -11.38235 -11.32645 -11.20000 -10.75907 -10.23804 -9.62017 -9.05672 -8.28798 -6.33935 0.10894 0.42338 1.38871 1.41008 1.52530 1.83799 2.37665 2.49024 2.90115 3.07082 3.33937 3.59717 3.78496 3.86264 3.98197 4.04256 4.17716 4.18883 4.30737 4.37840 4.51067 4.51778 4.63954 4.76499 4.83257 4.87507 4.88665 4.95294 5.00380 5.02460 5.13026 5.21594 5.28036 5.44739 5.52951 5.55555 5.61843 5.65979 6.09215 6.25961 6.28276 6.58678 6.74984 7.30840 7.31835 8.88058 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.043143 B = 0.002745 C = 0.002612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 648.845834 B =10197.996059 C =10715.603354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C -0.001 4.001 3 Si 0.954 3.046 4 H -0.266 1.266 5 H -0.289 1.289 6 H -0.238 1.238 7 C -0.535 4.535 8 H 0.029 0.971 9 C -0.008 4.008 10 C -0.104 4.104 11 C 0.134 3.866 12 N -0.705 5.705 13 C 0.443 3.557 14 C -0.320 4.320 15 C 0.193 3.807 16 N -0.604 5.604 17 C 0.507 3.493 18 N -0.464 5.464 19 C 0.054 3.946 20 C -0.117 4.117 21 C -0.125 4.125 22 C 0.039 3.961 23 N -0.613 5.613 24 H 0.266 0.734 25 H 0.028 0.972 26 H 0.028 0.972 27 H 0.056 0.944 28 H 0.055 0.945 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.406 0.594 32 H 0.161 0.839 33 H 0.201 0.799 34 H 0.084 0.916 35 H 0.042 0.958 36 H 0.097 0.903 37 H 0.083 0.917 38 H 0.082 0.918 39 H 0.091 0.909 40 H 0.077 0.923 41 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.620 -12.162 -2.690 29.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.197 4.197 3 Si 0.777 3.223 4 H -0.191 1.191 5 H -0.215 1.215 6 H -0.161 1.161 7 C -0.573 4.573 8 H 0.047 0.953 9 C -0.046 4.046 10 C -0.142 4.142 11 C 0.010 3.990 12 N -0.336 5.336 13 C 0.197 3.803 14 C -0.349 4.349 15 C 0.031 3.969 16 N -0.329 5.329 17 C 0.149 3.851 18 N -0.185 5.185 19 C -0.071 4.071 20 C -0.155 4.155 21 C -0.164 4.164 22 C -0.088 4.088 23 N -0.342 5.342 24 H 0.074 0.926 25 H 0.047 0.953 26 H 0.046 0.954 27 H 0.075 0.925 28 H 0.073 0.927 29 H 0.096 0.904 30 H 0.094 0.906 31 H 0.242 0.758 32 H 0.178 0.822 33 H 0.218 0.782 34 H 0.103 0.897 35 H 0.061 0.939 36 H 0.115 0.885 37 H 0.101 0.899 38 H 0.101 0.899 39 H 0.109 0.891 40 H 0.095 0.905 41 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 26.506 -13.035 -2.218 29.621 hybrid contribution -1.118 1.631 -0.343 2.007 sum 25.389 -11.404 -2.561 27.950 Atomic orbital electron populations 1.70084 1.08539 1.28209 1.52662 1.26111 0.95659 1.03890 0.94083 0.85596 0.79711 0.77706 0.79263 1.19108 1.21474 1.16078 1.21502 0.92338 0.93013 1.50491 0.95286 1.19440 0.93670 0.94104 0.97377 1.21473 0.92725 0.98420 1.01575 1.21575 0.94178 0.80658 1.02543 1.44741 1.02159 1.09319 1.77335 1.18637 0.86560 0.88714 0.86423 1.22314 0.94752 1.00915 1.16923 1.23303 0.94486 0.93011 0.86094 1.68353 1.38199 1.01320 1.25046 1.21026 0.84526 0.90987 0.88540 1.61297 1.12956 1.06982 1.37247 1.23215 1.01203 0.95221 0.87489 1.22546 0.93501 0.96171 1.03262 1.22460 0.97686 0.96141 1.00072 1.22980 0.83543 1.00137 1.02159 1.67377 1.16857 1.22343 1.27648 0.92556 0.95349 0.95392 0.92536 0.92656 0.90416 0.90628 0.75793 0.82161 0.78193 0.89733 0.93902 0.88475 0.89855 0.89917 0.89060 0.90481 0.90182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.52 13.96 21.45 0.30 -59.22 16 2 C 0.00 -0.06 5.47 84.66 0.46 0.40 16 3 Si 0.95 42.60 27.47 68.60 1.88 44.48 16 4 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 5 H -0.29 -12.86 7.11 99.48 0.71 -12.16 16 6 H -0.24 -9.49 6.54 99.48 0.65 -8.84 16 7 C -0.54 -30.03 9.66 25.60 0.25 -29.78 16 8 H 0.03 1.81 7.99 -2.91 -0.02 1.78 16 9 C -0.01 -0.34 4.04 29.85 0.12 -0.22 16 10 C -0.10 -3.62 5.27 30.60 0.16 -3.46 16 11 C 0.13 3.59 4.92 86.38 0.43 4.01 16 12 N -0.70 -19.15 5.71 -344.61 -1.97 -21.12 16 13 C 0.44 12.49 7.71 133.21 1.03 13.51 16 14 C -0.32 -7.44 9.39 22.58 0.21 -7.22 16 15 C 0.19 4.08 11.28 84.55 0.95 5.03 16 16 N -0.60 -15.43 8.14 -198.28 -1.61 -17.04 16 17 C 0.51 14.39 6.98 261.51 1.82 16.21 16 18 N -0.46 -11.29 5.35 -696.39 -3.73 -15.02 16 19 C 0.05 1.09 6.31 86.65 0.55 1.63 16 20 C -0.12 -1.48 7.06 31.80 0.22 -1.26 16 21 C -0.13 -1.51 6.93 31.47 0.22 -1.29 16 22 C 0.04 0.72 6.33 86.44 0.55 1.27 16 23 N -0.61 -18.79 10.25 -195.56 -2.00 -20.80 16 24 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 25 H 0.03 1.17 7.20 -2.39 -0.02 1.15 16 26 H 0.03 1.13 7.57 -2.38 -0.02 1.12 16 27 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 28 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 29 H 0.08 1.91 7.97 -2.39 -0.02 1.89 16 30 H 0.08 1.89 7.97 -2.39 -0.02 1.87 16 31 H 0.41 11.07 8.60 -92.71 -0.80 10.28 16 32 H 0.16 3.04 6.85 -2.91 -0.02 3.02 16 33 H 0.20 2.52 8.06 -2.91 -0.02 2.50 16 34 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 35 H 0.04 0.91 7.99 -2.39 -0.02 0.89 16 36 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 37 H 0.08 1.00 8.14 -2.39 -0.02 0.99 16 38 H 0.08 0.81 8.14 -2.39 -0.02 0.80 16 39 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 40 H 0.08 1.58 6.46 -2.39 -0.02 1.56 16 41 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 Total: -1.00 -70.10 333.09 0.01 -70.10 By element: Atomic # 1 Polarization: 19.60 SS G_CDS: 0.17 Total: 19.77 kcal Atomic # 6 Polarization: -8.12 SS G_CDS: 6.97 Total: -1.15 kcal Atomic # 7 Polarization: -124.18 SS G_CDS: -9.02 Total: -133.19 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 1.88 Total: 44.48 kcal Total: -70.10 0.01 -70.10 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168427218.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.324 kcal (2) G-P(sol) polarization free energy of solvation -70.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.096 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds