Wall clock time and date at job start Mon Mar 30 2020 01:28:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35622 * 117.00090 * 2 1 4 4 C 1.39155 * 120.50266 * 359.97345 * 3 2 1 5 5 C 1.38304 * 118.62699 * 179.77149 * 4 3 2 6 6 C 1.39935 * 119.59650 * 0.48049 * 5 4 3 7 7 N 1.38912 * 119.49925 * 179.78771 * 6 5 4 8 8 C 1.46498 * 119.99634 * 0.02562 * 7 6 5 9 9 C 1.52996 * 109.47059 * 179.72466 * 8 7 6 10 10 C 1.53003 * 109.47301 * 179.97438 * 9 8 7 11 11 C 1.53775 * 113.61499 * 274.13661 * 10 9 8 12 12 C 1.53960 * 87.01919 * 220.04818 * 11 10 9 13 13 C 1.53780 * 113.61330 * 176.52489 * 10 9 8 14 14 N 1.31873 * 121.00878 * 359.50838 * 6 5 4 15 15 C 1.33822 * 121.46762 * 0.26211 * 14 6 5 16 16 C 1.40920 * 119.84651 * 180.02562 * 15 14 6 17 17 H 1.08000 * 119.99668 * 179.97438 * 16 15 14 18 18 C 1.40020 * 120.00000 * 359.97438 * 16 15 14 19 19 N 1.30787 * 119.99962 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 120.00050 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47178 * 60.00192 * 20 18 16 22 22 H 1.48501 * 109.47084 * 180.02562 * 20 18 16 23 23 H 1.48496 * 109.46815 * 299.99743 * 20 18 16 24 24 H 1.09002 * 109.47416 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46928 * 300.00193 * 1 2 3 26 26 H 1.09004 * 109.47327 * 60.00125 * 1 2 3 27 27 H 1.08002 * 120.68616 * 0.02828 * 4 3 2 28 28 H 1.08011 * 120.20253 * 180.24975 * 5 4 3 29 29 H 0.97001 * 119.99921 * 179.72214 * 7 6 5 30 30 H 1.09004 * 109.46963 * 299.72262 * 8 7 6 31 31 H 1.08994 * 109.47567 * 59.72414 * 8 7 6 32 32 H 1.09004 * 109.47066 * 299.99732 * 9 8 7 33 33 H 1.09000 * 109.47665 * 59.99541 * 9 8 7 34 34 H 1.08997 * 112.84526 * 45.33378 * 10 9 8 35 35 H 1.09005 * 113.61342 * 334.56421 * 11 10 9 36 36 H 1.08996 * 113.61688 * 105.46842 * 11 10 9 37 37 H 1.08996 * 113.53505 * 270.80878 * 12 11 10 38 38 H 1.08998 * 113.66406 * 139.93261 * 12 11 10 39 39 H 1.08997 * 113.61532 * 254.52848 * 13 10 9 40 40 H 1.08997 * 113.61442 * 25.35587 * 13 10 9 41 41 H 0.96998 * 119.99607 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0447 1.2084 0.0000 4 6 1.2971 2.3821 -0.0006 5 6 1.9650 3.5931 0.0043 6 6 3.3642 3.6107 -0.0006 7 7 4.0330 4.8283 -0.0002 8 6 3.2735 6.0810 0.0059 9 6 4.2427 7.2649 0.0120 10 6 3.4496 8.5733 0.0177 11 6 3.0441 9.0540 -1.3855 12 6 3.3789 10.4784 -0.9066 13 6 4.3330 9.8287 0.1095 14 7 4.0578 2.4891 -0.0001 15 6 3.4544 1.2947 -0.0001 16 6 4.2291 0.1176 0.0010 17 1 3.7447 -0.8477 0.0014 18 6 5.6269 0.1994 0.0016 19 7 6.2135 1.3684 0.0016 20 14 6.6539 -1.3610 0.0023 21 1 6.3419 -2.1595 -1.2102 22 1 8.0956 -1.0047 0.0035 23 1 6.3408 -2.1590 1.2149 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 0.2176 2.3479 -0.0005 28 1 1.4100 4.5197 0.0081 29 1 5.0028 4.8490 0.0005 30 1 2.6460 6.1298 -0.8840 31 1 2.6456 6.1210 0.8959 32 1 4.8702 7.2161 0.9020 33 1 4.8707 7.2250 -0.8780 34 1 2.6260 8.5658 0.7317 35 1 3.7012 8.6939 -2.1772 36 1 1.9880 8.9048 -1.6100 37 1 2.5350 10.9924 -0.4465 38 1 3.8868 11.0842 -1.6570 39 1 4.3157 10.3040 1.0903 40 1 5.3434 9.6804 -0.2713 41 1 7.1819 1.4250 0.0017 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168888568.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:21 Heat of formation + Delta-G solvation = 12.225814 kcal Electronic energy + Delta-G solvation = -20873.943307 eV Core-core repulsion = 17754.573779 eV Total energy + Delta-G solvation = -3119.369528 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.158 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.10725 -38.68887 -36.89141 -34.93448 -33.28835 -30.75464 -30.22329 -28.27368 -26.38614 -25.73218 -25.10067 -24.30531 -21.97247 -21.02344 -20.27299 -19.42342 -17.36599 -16.50212 -16.38405 -15.66276 -15.21341 -14.79099 -14.66379 -14.53305 -14.42380 -13.84921 -13.08509 -12.83424 -12.63557 -12.53114 -12.48204 -12.18432 -11.95743 -11.53198 -11.25422 -11.20151 -11.11182 -11.02947 -10.65710 -10.55539 -10.40646 -10.35749 -10.16400 -10.12845 -9.74288 -9.38219 -8.36693 -7.94360 -7.60758 -6.32321 -6.20581 -4.30449 2.89241 3.14422 3.18401 3.18969 3.33552 4.03282 4.18959 4.52880 4.56944 4.65045 4.74033 4.79551 4.87256 5.28343 5.47866 5.52231 5.62259 5.66697 5.70652 5.78016 5.84161 5.84868 5.88030 5.92435 6.02692 6.03130 6.14752 6.15764 6.26266 6.38172 6.46219 6.48571 6.78235 6.87670 7.26255 7.37836 7.56849 7.75922 8.27552 8.34448 8.51555 8.76969 8.86115 9.24301 10.24565 10.41244 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.017990 B = 0.004162 C = 0.003437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1556.042843 B = 6725.129438 C = 8145.576322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.312 6.312 3 C -0.078 4.078 4 C -0.114 4.114 5 C -0.346 4.346 6 C 0.393 3.607 7 N -0.740 5.740 8 C 0.145 3.855 9 C -0.120 4.120 10 C -0.106 4.106 11 C -0.138 4.138 12 C -0.144 4.144 13 C -0.137 4.137 14 N -0.514 5.514 15 C 0.290 3.710 16 C -0.414 4.414 17 H 0.090 0.910 18 C 0.068 3.932 19 N -0.715 5.715 20 Si 0.908 3.092 21 H -0.265 1.265 22 H -0.279 1.279 23 H -0.265 1.265 24 H 0.079 0.921 25 H 0.036 0.964 26 H 0.036 0.964 27 H 0.099 0.901 28 H 0.091 0.909 29 H 0.395 0.605 30 H 0.048 0.952 31 H 0.047 0.953 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.090 0.910 35 H 0.081 0.919 36 H 0.066 0.934 37 H 0.077 0.923 38 H 0.064 0.936 39 H 0.064 0.936 40 H 0.080 0.920 41 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.558 11.366 -0.542 11.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.226 6.226 3 C -0.126 4.126 4 C -0.138 4.138 5 C -0.373 4.373 6 C 0.155 3.845 7 N -0.377 5.377 8 C 0.019 3.981 9 C -0.158 4.158 10 C -0.124 4.124 11 C -0.175 4.175 12 C -0.182 4.182 13 C -0.175 4.175 14 N -0.237 5.237 15 C 0.161 3.839 16 C -0.447 4.447 17 H 0.108 0.892 18 C -0.157 4.157 19 N -0.337 5.337 20 Si 0.733 3.267 21 H -0.190 1.190 22 H -0.204 1.204 23 H -0.190 1.190 24 H 0.098 0.902 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.117 0.883 28 H 0.109 0.891 29 H 0.229 0.771 30 H 0.067 0.933 31 H 0.065 0.935 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.108 0.892 35 H 0.100 0.900 36 H 0.084 0.916 37 H 0.096 0.904 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.099 0.901 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -2.547 11.428 -0.544 11.721 hybrid contribution -0.508 -0.373 0.013 0.630 sum -3.056 11.055 -0.531 11.482 Atomic orbital electron populations 1.22678 0.82277 1.01443 0.99619 1.85916 1.17770 1.27937 1.90947 1.20029 0.93445 0.83079 1.16051 1.20666 0.97217 0.92396 1.03560 1.20353 0.92878 0.96287 1.27773 1.18505 0.87741 0.86766 0.91449 1.44094 1.07819 1.01588 1.84243 1.21004 0.93998 0.82911 1.00205 1.21748 0.98234 0.93247 1.02535 1.22462 0.98645 0.93537 0.97802 1.23023 1.01597 0.95935 0.96990 1.22843 0.99598 0.96634 0.99078 1.22935 0.98436 0.96718 0.99388 1.68393 1.34732 0.94973 1.25589 1.17760 0.84987 0.91070 0.90052 1.19494 0.90541 0.93102 1.41527 0.89188 1.26075 0.98741 0.97105 0.93761 1.70168 1.10189 1.24474 1.28865 0.86380 0.78278 0.82150 0.79929 1.18958 1.20414 1.18965 0.90223 0.94543 0.94537 0.88343 0.89052 0.77087 0.93336 0.93471 0.91408 0.91427 0.89178 0.90036 0.91567 0.90443 0.91741 0.91725 0.90127 0.91870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.65 9.83 101.05 0.99 1.64 16 2 O -0.31 -7.48 9.61 -18.56 -0.18 -7.66 16 3 C -0.08 -2.05 6.74 -38.11 -0.26 -2.31 16 4 C -0.11 -2.71 9.12 -39.22 -0.36 -3.07 16 5 C -0.35 -8.23 9.33 -38.92 -0.36 -8.59 16 6 C 0.39 9.84 7.65 -155.25 -1.19 8.65 16 7 N -0.74 -15.18 5.72 -60.35 -0.35 -15.53 16 8 C 0.14 2.30 4.88 -4.04 -0.02 2.28 16 9 C -0.12 -1.49 5.15 -26.73 -0.14 -1.63 16 10 C -0.11 -1.10 3.64 -89.81 -0.33 -1.43 16 11 C -0.14 -1.36 7.65 -25.83 -0.20 -1.56 16 12 C -0.14 -1.24 8.09 -25.82 -0.21 -1.45 16 13 C -0.14 -1.26 7.65 -25.92 -0.20 -1.45 16 14 N -0.51 -14.45 7.88 -10.20 -0.08 -14.53 16 15 C 0.29 8.30 6.56 -84.85 -0.56 7.74 16 16 C -0.41 -11.60 8.94 -37.90 -0.34 -11.94 16 17 H 0.09 2.44 7.31 -52.49 -0.38 2.06 16 18 C 0.07 1.78 5.50 -17.33 -0.10 1.68 16 19 N -0.71 -19.17 11.45 55.55 0.64 -18.53 16 20 Si 0.91 19.17 29.56 -169.99 -5.02 14.15 16 21 H -0.26 -5.53 7.11 56.52 0.40 -5.13 16 22 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 23 H -0.26 -5.54 7.11 56.52 0.40 -5.13 16 24 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 25 H 0.04 0.61 7.69 -51.93 -0.40 0.21 16 26 H 0.04 0.61 7.69 -51.93 -0.40 0.21 16 27 H 0.10 2.04 6.44 -52.49 -0.34 1.70 16 28 H 0.09 1.94 6.67 -52.48 -0.35 1.59 16 29 H 0.39 8.03 8.59 -40.82 -0.35 7.68 16 30 H 0.05 0.79 7.93 -51.93 -0.41 0.37 16 31 H 0.05 0.76 7.90 -51.93 -0.41 0.35 16 32 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.07 0.85 7.87 -51.93 -0.41 0.44 16 34 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.08 0.83 7.92 -51.93 -0.41 0.42 16 36 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.08 0.73 8.10 -51.93 -0.42 0.31 16 41 H 0.27 6.58 8.29 -40.82 -0.34 6.24 16 LS Contribution 335.63 15.07 5.06 5.06 Total: -1.00 -30.59 335.63 -9.56 -40.16 By element: Atomic # 1 Polarization: 14.71 SS G_CDS: -6.38 Total: 8.33 kcal Atomic # 6 Polarization: -8.19 SS G_CDS: -3.25 Total: -11.44 kcal Atomic # 7 Polarization: -48.81 SS G_CDS: 0.21 Total: -48.59 kcal Atomic # 8 Polarization: -7.48 SS G_CDS: -0.18 Total: -7.66 kcal Atomic # 14 Polarization: 19.17 SS G_CDS: -5.02 Total: 14.15 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -30.59 -9.56 -40.16 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168888568.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.382 kcal (2) G-P(sol) polarization free energy of solvation -30.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.156 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds