Wall clock time and date at job start Mon Mar 30 2020 01:40:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86799 * 120.00399 * 2 1 4 4 H 1.48498 * 109.47734 * 240.00518 * 3 2 1 5 5 H 1.48501 * 109.46941 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46975 * 120.00237 * 3 2 1 7 7 C 1.37885 * 119.99968 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99943 * 179.97438 * 7 2 1 9 9 C 1.50695 * 119.99448 * 359.97438 * 7 2 1 10 10 C 1.53009 * 109.47122 * 180.02562 * 9 7 2 11 11 C 1.52993 * 109.47411 * 180.02562 * 10 9 7 12 12 C 1.52999 * 109.47358 * 59.99344 * 11 10 9 13 13 N 1.46507 * 109.46666 * 60.00105 * 12 11 10 14 14 C 1.35659 * 120.31133 * 13.61993 * 13 12 11 15 15 N 1.30407 * 121.41844 * 179.97438 * 14 13 12 16 16 C 1.33785 * 122.02667 * 359.73157 * 15 14 13 17 17 C 1.50700 * 119.79189 * 180.27426 * 16 15 14 18 18 N 1.46903 * 109.46704 * 275.24934 * 17 16 15 19 19 C 1.35641 * 120.41369 * 0.52367 * 16 15 14 20 20 C 1.38027 * 120.31297 * 193.58929 * 13 12 11 21 21 N 1.31477 * 120.92009 * 0.04438 * 20 13 12 22 22 C 1.52995 * 109.47432 * 300.00274 * 12 11 10 23 23 C 1.52996 * 109.47612 * 60.00500 * 9 7 2 24 24 H 0.97007 * 119.99753 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.47451 * 300.00263 * 9 7 2 26 26 H 1.08999 * 109.47033 * 59.99360 * 10 9 7 27 27 H 1.09000 * 109.46761 * 300.00181 * 10 9 7 28 28 H 1.09006 * 109.46726 * 299.99797 * 11 10 9 29 29 H 1.09004 * 109.47124 * 180.02562 * 11 10 9 30 30 H 1.08996 * 109.47172 * 179.97438 * 12 11 10 31 31 H 1.07998 * 119.29230 * 359.97438 * 14 13 12 32 32 H 1.08999 * 109.47441 * 35.25178 * 17 16 15 33 33 H 1.08998 * 109.47075 * 155.25456 * 17 16 15 34 34 H 1.00906 * 110.99833 * 180.02562 * 18 17 16 35 35 H 1.00897 * 111.00379 * 303.95820 * 18 17 16 36 36 H 1.08001 * 120.70369 * 179.76809 * 19 16 15 37 37 H 0.96998 * 120.00798 * 179.97438 * 21 20 13 38 38 H 1.09000 * 109.47069 * 179.97438 * 22 12 11 39 39 H 1.08992 * 109.47225 * 299.99824 * 22 12 11 40 40 H 1.09004 * 109.47039 * 299.99898 * 23 9 7 41 41 H 1.09000 * 109.46906 * 59.99430 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6962 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 6 2.2451 -3.6622 -0.0005 11 6 1.4800 -4.9871 -0.0012 12 6 0.6007 -5.0677 -1.2506 13 7 1.4433 -4.9898 -2.4466 14 6 2.7877 -5.1430 -2.3481 15 7 3.5580 -5.0782 -3.3983 16 6 3.0687 -4.8637 -4.6249 17 6 4.0047 -4.8043 -5.8045 18 7 4.5492 -3.4457 -5.9295 19 6 1.7361 -4.6943 -4.8127 20 6 0.8769 -4.7605 -3.6842 21 7 -0.4224 -4.6073 -3.8146 22 6 -0.3935 -3.9048 -1.2506 23 6 0.3708 -2.5800 -1.2494 24 1 -0.4850 0.8401 0.0004 25 1 0.6245 -2.5570 0.8896 26 1 2.8718 -3.6044 0.8894 27 1 2.8717 -3.6044 -0.8905 28 1 0.8531 -5.0450 0.8887 29 1 2.1883 -5.8157 -0.0007 30 1 0.0560 -6.0119 -1.2513 31 1 3.2295 -5.3224 -1.3791 32 1 4.8213 -5.5109 -5.6564 33 1 3.4609 -5.0627 -6.7131 34 1 5.1801 -3.3798 -6.7143 35 1 3.8086 -2.7645 -6.0032 36 1 1.3365 -4.5171 -5.8003 37 1 -0.8064 -4.4463 -4.6906 38 1 -1.0196 -3.9621 -2.1410 39 1 -1.0203 -3.9628 -0.3609 40 1 -0.3374 -1.7514 -1.2491 41 1 0.9972 -2.5220 -2.1396 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173327700.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:15 Heat of formation + Delta-G solvation = 68.686297 kcal Electronic energy + Delta-G solvation = -22503.150275 eV Core-core repulsion = 19418.521808 eV Total energy + Delta-G solvation = -3084.628467 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.20911 -37.93716 -35.45724 -34.54668 -33.41854 -31.87019 -30.03025 -29.53650 -29.01983 -25.82733 -24.70215 -23.88906 -21.77001 -21.53331 -20.68398 -19.07210 -17.55841 -16.81072 -16.30625 -15.88948 -15.76703 -15.43829 -14.87106 -14.47354 -14.46333 -13.84910 -13.70369 -13.11123 -12.82050 -12.58037 -12.16724 -12.02140 -11.70871 -11.54082 -11.46689 -11.12933 -10.83152 -10.69888 -10.53376 -10.21737 -10.00895 -9.70824 -9.64738 -9.37367 -8.97586 -8.79311 -8.77448 -8.37691 -8.18734 -7.29153 -5.93942 -4.00092 1.00386 2.26818 2.82153 3.34405 3.38705 3.42090 3.84484 4.23664 4.47043 4.60228 4.73121 4.93541 5.02118 5.29048 5.33565 5.36145 5.39296 5.48385 5.51191 5.64719 5.93315 6.05157 6.08417 6.16816 6.28379 6.42895 6.57258 6.62619 6.73823 6.87725 6.97370 7.07665 7.14428 7.27479 7.31595 7.42128 7.65741 7.79569 8.04255 8.20644 8.23201 8.50596 8.64745 9.03255 9.64273 11.11254 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.015739 B = 0.006637 C = 0.005604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1778.545369 B = 4217.632473 C = 4995.332251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.062 3.938 3 Si 0.887 3.113 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.514 4.514 8 H 0.052 0.948 9 C 0.049 3.951 10 C -0.121 4.121 11 C -0.138 4.138 12 C 0.144 3.856 13 N -0.483 5.483 14 C 0.391 3.609 15 N -0.555 5.555 16 C 0.173 3.827 17 C 0.114 3.886 18 N -0.838 5.838 19 C -0.286 4.286 20 C 0.427 3.573 21 N -0.769 5.769 22 C -0.149 4.149 23 C -0.098 4.098 24 H 0.259 0.741 25 H 0.025 0.975 26 H 0.056 0.944 27 H 0.051 0.949 28 H 0.085 0.915 29 H 0.056 0.944 30 H 0.076 0.924 31 H 0.207 0.793 32 H 0.089 0.911 33 H 0.040 0.960 34 H 0.344 0.656 35 H 0.344 0.656 36 H 0.133 0.867 37 H 0.338 0.662 38 H 0.110 0.890 39 H 0.059 0.941 40 H 0.089 0.911 41 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.903 -11.900 -8.202 14.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.139 4.139 3 Si 0.715 3.285 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.203 1.203 7 C -0.552 4.552 8 H 0.070 0.930 9 C 0.031 3.969 10 C -0.159 4.159 11 C -0.176 4.176 12 C 0.042 3.958 13 N -0.184 5.184 14 C 0.107 3.893 15 N -0.278 5.278 16 C 0.051 3.949 17 C -0.017 4.017 18 N -0.369 5.369 19 C -0.315 4.315 20 C 0.155 3.845 21 N -0.402 5.402 22 C -0.187 4.187 23 C -0.136 4.136 24 H 0.069 0.931 25 H 0.043 0.957 26 H 0.074 0.926 27 H 0.069 0.931 28 H 0.103 0.897 29 H 0.074 0.926 30 H 0.094 0.906 31 H 0.223 0.777 32 H 0.108 0.892 33 H 0.058 0.942 34 H 0.157 0.843 35 H 0.157 0.843 36 H 0.151 0.849 37 H 0.154 0.846 38 H 0.128 0.872 39 H 0.077 0.923 40 H 0.108 0.892 41 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 3.995 -12.000 -6.797 14.358 hybrid contribution -0.475 1.324 -1.988 2.435 sum 3.520 -10.676 -8.785 14.267 Atomic orbital electron populations 1.69871 1.05807 1.26332 1.50770 1.24940 0.94804 0.98917 0.95202 0.86740 0.79678 0.83478 0.78601 1.20363 1.21367 1.20305 1.21157 0.92741 0.90792 1.50484 0.92982 1.18667 0.92460 0.91144 0.94620 1.21924 0.99087 0.94269 1.00582 1.22074 0.99210 0.99170 0.97128 1.21598 0.91904 1.00822 0.81493 1.45289 1.07220 1.58166 1.07694 1.25217 0.79309 0.85493 0.99326 1.68057 1.35648 1.26039 0.98024 1.20579 0.91646 0.90106 0.92524 1.20577 0.96603 0.92203 0.92352 1.58512 1.23293 1.04344 1.50773 1.22409 0.94593 1.15501 0.99012 1.18638 0.91286 0.91182 0.83416 1.69669 1.07929 1.31232 1.31407 1.22353 0.97997 0.94418 1.03970 1.21454 0.99204 0.95162 0.97823 0.93090 0.95674 0.92551 0.93075 0.89652 0.92592 0.90610 0.77715 0.89246 0.94161 0.84295 0.84322 0.84881 0.84639 0.87178 0.92279 0.89224 0.95685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.69 11.32 55.43 0.63 -25.07 16 2 C 0.06 1.75 5.30 -17.82 -0.09 1.66 16 3 Si 0.89 21.74 29.54 -169.99 -5.02 16.72 16 4 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.51 -14.14 8.56 -34.44 -0.29 -14.43 16 8 H 0.05 1.43 7.74 -52.49 -0.41 1.02 16 9 C 0.05 1.20 2.10 -91.77 -0.19 1.00 16 10 C -0.12 -2.31 4.53 -26.73 -0.12 -2.43 16 11 C -0.14 -2.07 4.89 -26.74 -0.13 -2.20 16 12 C 0.14 2.34 3.21 -67.93 -0.22 2.12 16 13 N -0.48 -7.94 2.19 -110.30 -0.24 -8.18 16 14 C 0.39 6.03 8.96 -89.89 -0.81 5.22 16 15 N -0.55 -8.86 10.29 -10.60 -0.11 -8.97 16 16 C 0.17 2.55 6.27 -82.67 -0.52 2.03 16 17 C 0.11 1.31 7.10 -4.97 -0.04 1.27 16 18 N -0.84 -9.69 9.61 -11.41 -0.11 -9.80 16 19 C -0.29 -4.28 9.57 -39.07 -0.37 -4.66 16 20 C 0.43 7.28 6.65 -155.64 -1.03 6.25 16 21 N -0.77 -13.36 10.58 31.38 0.33 -13.03 16 22 C -0.15 -2.93 5.02 -26.76 -0.13 -3.07 16 23 C -0.10 -2.34 4.80 -26.76 -0.13 -2.47 16 24 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 25 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 27 H 0.05 1.00 5.22 -51.93 -0.27 0.72 16 28 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 29 H 0.06 0.65 6.83 -51.93 -0.35 0.30 16 30 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 31 H 0.21 2.68 4.98 -52.49 -0.26 2.41 16 32 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.04 0.38 8.04 -51.93 -0.42 -0.04 16 34 H 0.34 2.95 9.08 -39.29 -0.36 2.60 16 35 H 0.34 4.02 8.98 -39.29 -0.35 3.66 16 36 H 0.13 1.69 8.06 -52.49 -0.42 1.27 16 37 H 0.34 5.26 8.77 -40.82 -0.36 4.91 16 38 H 0.11 2.24 5.12 -51.93 -0.27 1.98 16 39 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 40 H 0.09 2.47 6.07 -51.93 -0.32 2.15 16 41 H 0.02 0.63 7.11 -51.93 -0.37 0.26 16 LS Contribution 314.96 15.07 4.75 4.75 Total: -1.00 -31.12 314.96 -9.68 -40.80 By element: Atomic # 1 Polarization: 18.29 SS G_CDS: -5.82 Total: 12.47 kcal Atomic # 6 Polarization: -5.62 SS G_CDS: -4.08 Total: -9.70 kcal Atomic # 7 Polarization: -65.54 SS G_CDS: 0.50 Total: -65.04 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -31.12 -9.68 -40.80 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173327700.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.490 kcal (2) G-P(sol) polarization free energy of solvation -31.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.804 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds