Wall clock time and date at job start Mon Mar 30 2020 01:40:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86799 * 120.00399 * 2 1 4 4 H 1.48498 * 109.47734 * 240.00518 * 3 2 1 5 5 H 1.48501 * 109.46941 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46975 * 120.00237 * 3 2 1 7 7 C 1.37885 * 119.99968 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99943 * 179.97438 * 7 2 1 9 9 C 1.50695 * 119.99448 * 359.97438 * 7 2 1 10 10 C 1.53009 * 109.47122 * 180.02562 * 9 7 2 11 11 C 1.52993 * 109.47411 * 180.02562 * 10 9 7 12 12 C 1.52999 * 109.47358 * 59.99344 * 11 10 9 13 13 N 1.46507 * 109.46666 * 60.00105 * 12 11 10 14 14 C 1.35659 * 120.31133 * 13.61993 * 13 12 11 15 15 N 1.30407 * 121.41844 * 179.97438 * 14 13 12 16 16 C 1.33785 * 122.02667 * 359.73157 * 15 14 13 17 17 C 1.50700 * 119.79189 * 180.27426 * 16 15 14 18 18 N 1.46903 * 109.46704 * 275.24934 * 17 16 15 19 19 C 1.35641 * 120.41369 * 0.52367 * 16 15 14 20 20 C 1.38027 * 120.31297 * 193.58929 * 13 12 11 21 21 N 1.31477 * 120.92009 * 0.04438 * 20 13 12 22 22 C 1.52995 * 109.47432 * 300.00274 * 12 11 10 23 23 C 1.52996 * 109.47612 * 60.00500 * 9 7 2 24 24 H 0.97007 * 119.99753 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.47451 * 300.00263 * 9 7 2 26 26 H 1.08999 * 109.47033 * 59.99360 * 10 9 7 27 27 H 1.09000 * 109.46761 * 300.00181 * 10 9 7 28 28 H 1.09006 * 109.46726 * 299.99797 * 11 10 9 29 29 H 1.09004 * 109.47124 * 180.02562 * 11 10 9 30 30 H 1.08996 * 109.47172 * 179.97438 * 12 11 10 31 31 H 1.07998 * 119.29230 * 359.97438 * 14 13 12 32 32 H 1.08999 * 109.47441 * 35.25178 * 17 16 15 33 33 H 1.08998 * 109.47075 * 155.25456 * 17 16 15 34 34 H 1.00906 * 110.99833 * 180.02562 * 18 17 16 35 35 H 1.00897 * 111.00379 * 303.95820 * 18 17 16 36 36 H 1.08001 * 120.70369 * 179.76809 * 19 16 15 37 37 H 0.96998 * 120.00798 * 179.97438 * 21 20 13 38 38 H 1.09000 * 109.47069 * 179.97438 * 22 12 11 39 39 H 1.08992 * 109.47225 * 299.99824 * 22 12 11 40 40 H 1.09004 * 109.47039 * 299.99898 * 23 9 7 41 41 H 1.09000 * 109.46906 * 59.99430 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6962 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 6 2.2451 -3.6622 -0.0005 11 6 1.4800 -4.9871 -0.0012 12 6 0.6007 -5.0677 -1.2506 13 7 1.4433 -4.9898 -2.4466 14 6 2.7877 -5.1430 -2.3481 15 7 3.5580 -5.0782 -3.3983 16 6 3.0687 -4.8637 -4.6249 17 6 4.0047 -4.8043 -5.8045 18 7 4.5492 -3.4457 -5.9295 19 6 1.7361 -4.6943 -4.8127 20 6 0.8769 -4.7605 -3.6842 21 7 -0.4224 -4.6073 -3.8146 22 6 -0.3935 -3.9048 -1.2506 23 6 0.3708 -2.5800 -1.2494 24 1 -0.4850 0.8401 0.0004 25 1 0.6245 -2.5570 0.8896 26 1 2.8718 -3.6044 0.8894 27 1 2.8717 -3.6044 -0.8905 28 1 0.8531 -5.0450 0.8887 29 1 2.1883 -5.8157 -0.0007 30 1 0.0560 -6.0119 -1.2513 31 1 3.2295 -5.3224 -1.3791 32 1 4.8213 -5.5109 -5.6564 33 1 3.4609 -5.0627 -6.7131 34 1 5.1801 -3.3798 -6.7143 35 1 3.8086 -2.7645 -6.0032 36 1 1.3365 -4.5171 -5.8003 37 1 -0.8064 -4.4463 -4.6906 38 1 -1.0196 -3.9621 -2.1410 39 1 -1.0203 -3.9628 -0.3609 40 1 -0.3374 -1.7514 -1.2491 41 1 0.9972 -2.5220 -2.1396 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173327700.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:14 Heat of formation + Delta-G solvation = 48.203464 kcal Electronic energy + Delta-G solvation = -22504.038477 eV Core-core repulsion = 19418.521808 eV Total energy + Delta-G solvation = -3085.516669 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.45607 -39.31748 -36.76221 -35.73964 -35.00413 -33.46373 -31.57994 -30.87283 -30.49447 -27.23125 -26.27129 -25.17215 -23.23798 -22.97255 -22.11439 -20.62543 -18.72977 -18.44907 -17.90432 -17.17404 -17.04055 -16.61080 -16.55170 -15.88696 -15.62005 -15.11250 -14.94363 -14.55231 -14.44762 -14.06641 -13.59088 -13.50786 -13.14560 -12.94631 -12.88421 -12.74547 -12.59061 -12.40491 -12.11704 -11.95063 -11.78708 -11.33192 -11.03799 -10.97330 -10.57545 -10.51896 -10.36059 -9.75457 -9.64822 -8.53496 -8.07609 -6.20885 -0.14901 1.04071 1.37096 1.38349 1.45461 1.60180 2.41397 2.67462 3.18805 3.19377 3.53773 3.68938 3.79861 3.94309 4.04089 4.12521 4.23711 4.40049 4.48165 4.55107 4.59593 4.63407 4.77855 4.82835 4.94828 5.02133 5.10896 5.12867 5.20515 5.38629 5.40895 5.49572 5.60141 5.68601 5.89592 6.02695 6.12754 6.14799 6.23462 6.42877 6.55533 6.93142 7.05087 7.41503 7.46652 8.95262 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.015739 B = 0.006637 C = 0.005604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1778.545369 B = 4217.632473 C = 4995.332251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.012 3.988 3 Si 0.944 3.056 4 H -0.277 1.277 5 H -0.285 1.285 6 H -0.267 1.267 7 C -0.532 4.532 8 H 0.048 0.952 9 C 0.045 3.955 10 C -0.113 4.113 11 C -0.129 4.129 12 C 0.149 3.851 13 N -0.488 5.488 14 C 0.384 3.616 15 N -0.567 5.567 16 C 0.167 3.833 17 C 0.117 3.883 18 N -0.852 5.852 19 C -0.294 4.294 20 C 0.412 3.588 21 N -0.791 5.791 22 C -0.143 4.143 23 C -0.079 4.079 24 H 0.257 0.743 25 H -0.002 1.002 26 H 0.063 0.937 27 H 0.047 0.953 28 H 0.094 0.906 29 H 0.104 0.896 30 H 0.101 0.899 31 H 0.230 0.770 32 H 0.094 0.906 33 H 0.066 0.934 34 H 0.360 0.640 35 H 0.342 0.658 36 H 0.152 0.848 37 H 0.343 0.657 38 H 0.104 0.896 39 H 0.058 0.942 40 H 0.044 0.956 41 H 0.002 0.998 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.421 -13.407 -8.469 16.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.186 4.186 3 Si 0.770 3.230 4 H -0.203 1.203 5 H -0.211 1.211 6 H -0.192 1.192 7 C -0.570 4.570 8 H 0.066 0.934 9 C 0.026 3.974 10 C -0.151 4.151 11 C -0.166 4.166 12 C 0.047 3.953 13 N -0.189 5.189 14 C 0.100 3.900 15 N -0.290 5.290 16 C 0.045 3.955 17 C -0.014 4.014 18 N -0.385 5.385 19 C -0.323 4.323 20 C 0.141 3.859 21 N -0.426 5.426 22 C -0.181 4.181 23 C -0.117 4.117 24 H 0.066 0.934 25 H 0.016 0.984 26 H 0.082 0.918 27 H 0.066 0.934 28 H 0.113 0.887 29 H 0.122 0.878 30 H 0.119 0.881 31 H 0.246 0.754 32 H 0.113 0.887 33 H 0.084 0.916 34 H 0.175 0.825 35 H 0.154 0.846 36 H 0.169 0.831 37 H 0.159 0.841 38 H 0.121 0.879 39 H 0.076 0.924 40 H 0.062 0.938 41 H 0.021 0.979 Dipole moment (debyes) X Y Z Total from point charges 5.541 -13.516 -7.073 16.230 hybrid contribution -0.933 1.833 -1.931 2.821 sum 4.608 -11.683 -9.004 15.453 Atomic orbital electron populations 1.70027 1.07055 1.26789 1.51659 1.25695 0.95582 1.02170 0.95193 0.85831 0.78572 0.79830 0.78769 1.20293 1.21080 1.19239 1.21611 0.92844 0.92635 1.49941 0.93387 1.18652 0.93124 0.92287 0.93318 1.21757 0.98101 0.94428 1.00770 1.22044 0.99678 0.98203 0.96693 1.21549 0.91611 0.99966 0.82209 1.45363 1.07662 1.58373 1.07473 1.25726 0.78844 0.85109 1.00273 1.68110 1.36008 1.26195 0.98666 1.21074 0.92212 0.89080 0.93110 1.20632 0.96499 0.92282 0.92003 1.58492 1.23662 1.04352 1.52001 1.22585 0.94676 1.15796 0.99287 1.19007 0.91629 0.90943 0.84328 1.69614 1.08547 1.32390 1.32029 1.22196 0.98500 0.93759 1.03654 1.21118 0.97962 0.96044 0.96587 0.93354 0.98377 0.91832 0.93411 0.88717 0.87750 0.88138 0.75420 0.88749 0.91627 0.82479 0.84600 0.83066 0.84087 0.87852 0.92387 0.93762 0.97943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.62 11.32 21.45 0.24 -54.38 16 2 C 0.01 0.68 5.30 84.66 0.45 1.13 16 3 Si 0.94 45.11 29.54 68.60 2.03 47.14 16 4 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 5 H -0.29 -13.40 7.11 99.48 0.71 -12.70 16 6 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 7 C -0.53 -29.75 8.56 25.60 0.22 -29.53 16 8 H 0.05 2.65 7.74 -2.91 -0.02 2.63 16 9 C 0.04 2.18 2.10 -11.54 -0.02 2.16 16 10 C -0.11 -4.12 4.53 30.59 0.14 -3.99 16 11 C -0.13 -3.44 4.89 30.59 0.15 -3.29 16 12 C 0.15 4.52 3.21 44.99 0.14 4.66 16 13 N -0.49 -15.19 2.19 -502.88 -1.10 -16.29 16 14 C 0.38 10.94 8.96 180.09 1.61 12.55 16 15 N -0.57 -16.96 10.29 -187.46 -1.93 -18.88 16 16 C 0.17 4.61 6.27 41.66 0.26 4.87 16 17 C 0.12 2.41 7.10 85.56 0.61 3.02 16 18 N -0.85 -18.16 9.61 -190.00 -1.83 -19.98 16 19 C -0.29 -8.44 9.57 22.60 0.22 -8.23 16 20 C 0.41 13.69 6.65 134.38 0.89 14.58 16 21 N -0.79 -27.28 10.58 -54.62 -0.58 -27.86 16 22 C -0.14 -5.61 5.02 30.58 0.15 -5.46 16 23 C -0.08 -3.86 4.80 30.58 0.15 -3.71 16 24 H 0.26 14.77 8.31 -92.70 -0.77 14.00 16 25 H 0.00 -0.10 8.14 -2.39 -0.02 -0.12 16 26 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 27 H 0.05 1.78 5.22 -2.39 -0.01 1.77 16 28 H 0.09 2.43 8.14 -2.38 -0.02 2.41 16 29 H 0.10 1.88 6.83 -2.38 -0.02 1.87 16 30 H 0.10 2.64 8.14 -2.39 -0.02 2.62 16 31 H 0.23 5.13 4.98 -2.91 -0.01 5.12 16 32 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 33 H 0.07 1.03 8.04 -2.39 -0.02 1.01 16 34 H 0.36 5.46 9.08 -89.69 -0.81 4.65 16 35 H 0.34 7.53 8.98 -89.70 -0.81 6.73 16 36 H 0.15 3.62 8.06 -2.91 -0.02 3.60 16 37 H 0.34 10.69 8.77 -92.71 -0.81 9.88 16 38 H 0.10 4.25 5.12 -2.39 -0.01 4.24 16 39 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 40 H 0.04 2.55 6.07 -2.38 -0.01 2.53 16 41 H 0.00 0.09 7.11 -2.39 -0.02 0.07 16 Total: -1.00 -69.33 314.96 0.45 -68.88 By element: Atomic # 1 Polarization: 33.95 SS G_CDS: -1.35 Total: 32.60 kcal Atomic # 6 Polarization: -16.20 SS G_CDS: 4.97 Total: -11.23 kcal Atomic # 7 Polarization: -132.20 SS G_CDS: -5.19 Total: -137.39 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.14 kcal Total: -69.33 0.45 -68.88 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173327700.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.080 kcal (2) G-P(sol) polarization free energy of solvation -69.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.876 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds