Wall clock time and date at job start Mon Mar 30 2020 01:38:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48499 * 109.46616 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47104 * 299.99522 * 3 2 1 6 6 H 1.48489 * 109.47200 * 59.99802 * 3 2 1 7 7 C 1.37876 * 119.99563 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99683 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47466 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47060 * 180.02562 * 10 9 7 12 12 C 1.53002 * 109.47233 * 299.99657 * 11 10 9 13 13 N 1.46506 * 109.47042 * 300.00642 * 12 11 10 14 14 C 1.39000 * 119.99576 * 204.99743 * 13 12 11 15 15 N 1.32681 * 120.09952 * 359.97438 * 14 13 12 16 16 C 1.32215 * 119.91743 * 179.97438 * 15 14 13 17 17 C 1.38207 * 120.10465 * 0.02562 * 16 15 14 18 18 N 1.32245 * 120.18357 * 359.97438 * 17 16 15 19 19 C 1.31944 * 120.09303 * 359.73099 * 18 17 16 20 20 C 1.50694 * 120.05691 * 180.27803 * 19 18 17 21 21 N 1.46899 * 109.47286 * 270.24453 * 20 19 18 22 22 C 1.52997 * 109.46817 * 60.00194 * 12 11 10 23 23 C 1.52999 * 109.46961 * 300.00269 * 9 7 2 24 24 H 0.97002 * 119.99731 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.47120 * 59.99671 * 9 7 2 26 26 H 1.09002 * 109.47153 * 59.99773 * 10 9 7 27 27 H 1.09001 * 109.46832 * 299.99964 * 10 9 7 28 28 H 1.08992 * 109.47399 * 59.99823 * 11 10 9 29 29 H 1.09004 * 109.46724 * 180.02562 * 11 10 9 30 30 H 1.08993 * 109.47662 * 180.02562 * 12 11 10 31 31 H 0.97000 * 120.00279 * 24.99489 * 13 12 11 32 32 H 1.08000 * 119.94917 * 179.97438 * 16 15 14 33 33 H 1.07994 * 119.91063 * 179.97438 * 17 16 15 34 34 H 1.09001 * 109.47670 * 30.24403 * 20 19 18 35 35 H 1.09006 * 109.47539 * 150.24202 * 20 19 18 36 36 H 1.00898 * 111.00754 * 180.02562 * 21 20 19 37 37 H 1.00904 * 110.99916 * 303.95523 * 21 20 19 38 38 H 1.09002 * 109.47153 * 60.00231 * 22 12 11 39 39 H 1.09001 * 109.47289 * 180.02562 * 22 12 11 40 40 H 1.09000 * 109.47486 * 59.99568 * 23 9 7 41 41 H 1.09002 * 109.46716 * 299.99650 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8904 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4800 -4.9871 -0.0001 12 6 0.6000 -5.0685 1.2489 13 7 1.4420 -4.9912 2.4453 14 6 1.0007 -5.5430 3.6424 15 7 -0.1827 -6.1397 3.7037 16 6 -0.5986 -6.6639 4.8441 17 6 0.1971 -6.5905 5.9717 18 7 1.3774 -5.9967 5.9152 19 6 1.8024 -5.4763 4.7797 20 6 3.1501 -4.8053 4.7146 21 7 3.0031 -3.3791 5.0342 22 6 -0.3941 -3.9055 1.2489 23 6 0.3709 -2.5799 1.2494 24 1 -0.4850 0.8401 -0.0004 25 1 0.6246 -2.5571 -0.8897 26 1 2.8718 -3.6044 0.8905 27 1 2.8718 -3.6044 -0.8895 28 1 0.8537 -5.0446 -0.8902 29 1 2.1884 -5.8156 0.0003 30 1 0.0553 -6.0126 1.2487 31 1 2.3073 -4.5550 2.4022 32 1 -1.5620 -7.1493 4.8947 33 1 -0.1459 -7.0193 6.9017 34 1 3.8232 -5.2713 5.4343 35 1 3.5612 -4.9122 3.7107 36 1 3.8937 -2.9063 4.9970 37 1 2.3341 -2.9382 4.4209 38 1 -1.0205 -3.9630 0.3587 39 1 -1.0208 -3.9632 2.1388 40 1 -0.3374 -1.7513 1.2490 41 1 0.9972 -2.5220 2.1396 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173329040.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:48 Heat of formation + Delta-G solvation = 16.505941 kcal Electronic energy + Delta-G solvation = -22176.938999 eV Core-core repulsion = 19090.047822 eV Total energy + Delta-G solvation = -3086.891177 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.04274 -39.87013 -36.54531 -36.14953 -34.65458 -33.49393 -31.57711 -31.35800 -29.74467 -27.07180 -26.62140 -24.53957 -23.34997 -23.05841 -22.45366 -20.13649 -19.20551 -18.38963 -17.98755 -17.39965 -16.68434 -16.52416 -16.09876 -15.76595 -15.54513 -15.21458 -15.14166 -14.66414 -14.56004 -14.03969 -13.61516 -13.46800 -13.14295 -13.10187 -12.98123 -12.70550 -12.53154 -12.38693 -12.33369 -11.97209 -11.81744 -11.78181 -11.29017 -11.14989 -10.63334 -10.49185 -10.32291 -9.89925 -9.70217 -8.69321 -8.06213 -6.19942 0.07016 0.45222 1.38440 1.41876 1.51096 2.16380 2.43272 2.89081 3.20911 3.31775 3.49694 3.58213 3.82413 3.94149 4.11507 4.17685 4.19332 4.32978 4.47591 4.57273 4.61056 4.64073 4.78270 4.81200 4.87921 4.96112 5.02499 5.15179 5.23623 5.38830 5.43197 5.47038 5.64646 5.71333 6.02618 6.07217 6.11904 6.16941 6.24521 6.42519 6.47357 6.79215 6.94396 7.13272 7.48619 8.97076 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.020934 B = 0.005336 C = 0.004872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.221741 B = 5246.344351 C = 5745.479820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.013 3.987 3 Si 0.946 3.054 4 H -0.265 1.265 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.527 4.527 8 H 0.053 0.947 9 C 0.046 3.954 10 C -0.100 4.100 11 C -0.118 4.118 12 C 0.170 3.830 13 N -0.695 5.695 14 C 0.357 3.643 15 N -0.523 5.523 16 C 0.102 3.898 17 C -0.034 4.034 18 N -0.411 5.411 19 C 0.001 3.999 20 C 0.126 3.874 21 N -0.848 5.848 22 C -0.117 4.117 23 C -0.090 4.090 24 H 0.257 0.743 25 H -0.007 1.007 26 H 0.049 0.951 27 H 0.051 0.949 28 H 0.075 0.925 29 H 0.080 0.920 30 H 0.085 0.915 31 H 0.409 0.591 32 H 0.200 0.800 33 H 0.194 0.806 34 H 0.096 0.904 35 H 0.049 0.951 36 H 0.357 0.643 37 H 0.337 0.663 38 H 0.055 0.945 39 H 0.040 0.960 40 H 0.048 0.952 41 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.523 -13.719 7.487 15.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.185 4.185 3 Si 0.772 3.228 4 H -0.189 1.189 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.566 4.566 8 H 0.071 0.929 9 C 0.028 3.972 10 C -0.137 4.137 11 C -0.156 4.156 12 C 0.065 3.935 13 N -0.328 5.328 14 C 0.117 3.883 15 N -0.246 5.246 16 C -0.059 4.059 17 C -0.195 4.195 18 N -0.125 5.125 19 C -0.148 4.148 20 C -0.006 4.006 21 N -0.380 5.380 22 C -0.156 4.156 23 C -0.128 4.128 24 H 0.066 0.934 25 H 0.011 0.989 26 H 0.068 0.932 27 H 0.070 0.930 28 H 0.094 0.906 29 H 0.098 0.902 30 H 0.103 0.897 31 H 0.249 0.751 32 H 0.217 0.783 33 H 0.211 0.789 34 H 0.114 0.886 35 H 0.067 0.933 36 H 0.172 0.828 37 H 0.149 0.851 38 H 0.073 0.927 39 H 0.059 0.941 40 H 0.066 0.934 41 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 2.042 -13.862 8.008 16.139 hybrid contribution 0.602 1.712 -1.096 2.120 sum 2.643 -12.150 6.912 14.227 Atomic orbital electron populations 1.70040 1.07157 1.26695 1.51776 1.25685 0.95499 1.02143 0.95176 0.85691 0.79349 0.80425 0.77288 1.18930 1.21061 1.21122 1.21634 0.92983 0.92199 1.49742 0.92905 1.18628 0.93034 0.92281 0.93263 1.21472 0.97846 0.94190 1.00239 1.21811 0.99073 0.97884 0.96856 1.20795 0.91100 0.97867 0.83736 1.44844 1.21518 1.60161 1.06299 1.19369 0.90425 0.90705 0.87762 1.68065 1.13608 1.13609 1.29327 1.24075 1.01017 0.93342 0.87469 1.23824 0.91600 1.02530 1.01523 1.67992 1.15185 1.04354 1.24984 1.21525 0.99397 1.04995 0.88910 1.20376 0.91295 0.88699 1.00231 1.58666 1.15736 1.02358 1.61235 1.21866 0.97694 0.96080 0.99985 1.21276 0.98510 0.95372 0.97627 0.93375 0.98926 0.93234 0.93031 0.90609 0.90154 0.89712 0.75124 0.78341 0.78937 0.88610 0.93314 0.82846 0.85118 0.92664 0.94131 0.93384 0.95499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.60 11.32 21.45 0.24 -52.36 16 2 C 0.01 0.72 5.30 84.65 0.45 1.17 16 3 Si 0.95 43.01 29.54 68.60 2.03 45.04 16 4 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 5 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 6 H -0.29 -12.90 7.11 99.48 0.71 -12.20 16 7 C -0.53 -27.76 8.56 25.60 0.22 -27.54 16 8 H 0.05 2.72 7.74 -2.91 -0.02 2.70 16 9 C 0.05 2.17 2.10 -11.54 -0.02 2.15 16 10 C -0.10 -3.61 4.97 30.59 0.15 -3.46 16 11 C -0.12 -3.49 5.61 30.60 0.17 -3.32 16 12 C 0.17 5.26 2.81 44.99 0.13 5.39 16 13 N -0.69 -20.37 4.29 -324.18 -1.39 -21.76 16 14 C 0.36 10.68 7.44 133.02 0.99 11.67 16 15 N -0.52 -15.19 9.38 -192.64 -1.81 -17.00 16 16 C 0.10 2.29 11.22 84.63 0.95 3.24 16 17 C -0.03 -0.76 11.21 84.62 0.95 0.19 16 18 N -0.41 -11.59 10.41 -182.77 -1.90 -13.49 16 19 C 0.00 0.04 6.32 42.80 0.27 0.31 16 20 C 0.13 3.09 6.65 85.56 0.57 3.66 16 21 N -0.85 -22.01 9.61 -190.01 -1.83 -23.83 16 22 C -0.12 -4.44 5.62 30.61 0.17 -4.27 16 23 C -0.09 -4.07 4.83 30.61 0.15 -3.93 16 24 H 0.26 14.18 8.31 -92.71 -0.77 13.41 16 25 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 26 H 0.05 1.69 6.51 -2.39 -0.02 1.68 16 27 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 28 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 29 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 30 H 0.08 2.53 7.55 -2.39 -0.02 2.52 16 31 H 0.41 11.55 4.87 -92.71 -0.45 11.10 16 32 H 0.20 2.78 8.06 -2.91 -0.02 2.76 16 33 H 0.19 2.83 8.06 -2.91 -0.02 2.80 16 34 H 0.10 2.20 8.14 -2.39 -0.02 2.18 16 35 H 0.05 1.08 6.56 -2.38 -0.02 1.06 16 36 H 0.36 7.64 9.08 -89.70 -0.81 6.83 16 37 H 0.34 9.92 8.99 -89.69 -0.81 9.12 16 38 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 39 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 40 H 0.05 2.59 6.07 -2.39 -0.01 2.57 16 41 H 0.03 1.20 7.61 -2.39 -0.02 1.18 16 Total: -1.00 -63.66 324.89 -0.52 -64.19 By element: Atomic # 1 Polarization: 34.95 SS G_CDS: -1.01 Total: 33.94 kcal Atomic # 6 Polarization: -19.87 SS G_CDS: 5.14 Total: -14.73 kcal Atomic # 7 Polarization: -121.75 SS G_CDS: -6.68 Total: -128.43 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.04 kcal Total: -63.66 -0.52 -64.19 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173329040.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.692 kcal (2) G-P(sol) polarization free energy of solvation -63.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.186 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds