Wall clock time and date at job start Mon Mar 30 2020 01:49:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 120.00265 * 2 1 4 4 H 1.48501 * 109.47161 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.46922 * 300.00538 * 3 2 1 6 6 H 1.48502 * 109.47170 * 60.00380 * 3 2 1 7 7 C 1.37878 * 119.99713 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00153 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99773 * 0.02562 * 7 2 1 10 10 C 1.53009 * 109.46751 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.46978 * 299.99491 * 10 9 7 12 12 C 1.53001 * 109.46874 * 300.00379 * 11 10 9 13 13 N 1.46908 * 109.46946 * 180.02562 * 12 11 10 14 14 C 1.46965 * 110.99949 * 180.02562 * 13 12 11 15 15 C 1.53460 * 109.74514 * 165.13527 * 14 13 12 16 16 N 1.46313 * 108.21391 * 49.57894 * 15 14 13 17 17 C 1.34415 * 129.75819 * 163.63235 * 16 15 14 18 18 N 1.30920 * 107.03272 * 180.22818 * 17 16 15 19 19 N 1.29163 * 109.74073 * 0.02562 * 18 17 16 20 20 C 1.29632 * 109.46180 * 359.85551 * 19 18 17 21 21 C 1.47384 * 111.00118 * 55.71466 * 13 12 11 22 22 C 1.52994 * 109.47332 * 60.00051 * 12 11 10 23 23 C 1.52998 * 109.47779 * 59.99925 * 9 7 2 24 24 H 0.97002 * 119.99568 * 359.97438 * 1 2 3 25 25 H 1.08999 * 109.47275 * 299.99280 * 9 7 2 26 26 H 1.08999 * 109.47125 * 179.97438 * 10 9 7 27 27 H 1.08994 * 109.47170 * 59.99304 * 10 9 7 28 28 H 1.08996 * 109.47548 * 180.02562 * 11 10 9 29 29 H 1.08995 * 109.47100 * 59.99902 * 11 10 9 30 30 H 1.08999 * 109.47333 * 299.99577 * 12 11 10 31 31 H 1.09000 * 109.42959 * 45.05005 * 14 13 12 32 32 H 1.09001 * 109.38194 * 285.19095 * 14 13 12 33 33 H 1.09002 * 109.72351 * 169.27498 * 15 14 13 34 34 H 1.09004 * 109.72094 * 289.88871 * 15 14 13 35 35 H 1.08004 * 126.48235 * 0.24087 * 17 16 15 36 36 H 1.08996 * 109.75575 * 293.84650 * 21 13 12 37 37 H 1.09006 * 109.75159 * 54.53705 * 21 13 12 38 38 H 1.08995 * 109.47459 * 59.99976 * 22 12 11 39 39 H 1.09006 * 109.47148 * 179.97438 * 22 12 11 40 40 H 1.08995 * 109.47109 * 179.97438 * 23 9 7 41 41 H 1.09003 * 109.46392 * 300.00030 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8906 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4991 -0.0017 10 6 2.2451 -3.6621 -0.0015 11 6 3.1256 -3.5806 -1.2501 12 6 2.2468 -3.6610 -2.4999 13 7 3.0923 -3.5833 -3.6988 14 6 2.2803 -3.6570 -4.9216 15 6 3.1168 -3.2081 -6.1273 16 7 4.3893 -3.9295 -6.0951 17 6 5.3054 -4.1003 -7.0638 18 7 6.2709 -4.8237 -6.5553 19 7 6.0005 -5.1094 -5.3250 20 6 4.8620 -4.5819 -4.9993 21 6 4.1300 -4.6298 -3.6821 22 6 1.2527 -2.4981 -2.5001 23 6 0.3717 -2.5794 -1.2513 24 1 -0.4849 0.8401 0.0004 25 1 0.6240 -2.5575 0.8880 26 1 1.7001 -4.6061 -0.0018 27 1 2.8712 -3.6047 0.8889 28 1 3.8336 -4.4093 -1.2502 29 1 3.6706 -2.6367 -1.2493 30 1 1.7018 -4.6050 -2.5008 31 1 1.4121 -3.0059 -4.8201 32 1 1.9475 -4.6838 -5.0734 33 1 2.5857 -3.4401 -7.0504 34 1 3.3006 -2.1353 -6.0684 35 1 5.2547 -3.7137 -8.0710 36 1 4.8276 -4.4439 -2.8655 37 1 3.6652 -5.6075 -3.5540 38 1 1.7977 -1.5542 -2.4994 39 1 0.6269 -2.5552 -3.3908 40 1 -0.1730 -3.5235 -1.2522 41 1 -0.3366 -1.7508 -1.2509 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173332033.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:54 Heat of formation + Delta-G solvation = 82.657032 kcal Electronic energy + Delta-G solvation = -22277.946368 eV Core-core repulsion = 19193.923718 eV Total energy + Delta-G solvation = -3084.022651 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -43.24487 -39.14394 -36.70078 -34.47006 -32.33780 -31.44794 -30.20184 -29.60682 -28.28281 -25.64275 -24.67730 -23.63856 -22.40357 -21.32706 -20.58877 -19.65420 -18.77558 -17.43128 -16.58529 -15.85390 -15.70687 -15.21619 -14.87006 -14.76212 -14.28717 -14.01541 -13.74467 -13.10648 -12.88334 -12.76579 -12.59703 -12.16130 -11.69361 -11.44735 -11.21569 -11.06221 -10.99238 -10.87213 -10.63123 -10.48696 -10.36640 -10.18993 -10.16423 -9.71003 -9.29554 -9.24250 -8.91037 -8.66600 -8.36896 -8.28115 -5.99366 -4.03071 1.81594 2.44591 2.84768 3.27835 3.37070 3.41505 3.60166 4.19966 4.32825 4.43479 4.46675 4.77291 4.83040 5.11212 5.25426 5.30708 5.33876 5.43961 5.50916 5.59577 5.70366 5.78759 5.86595 6.09824 6.14336 6.26948 6.38604 6.41678 6.51352 6.63135 6.75698 6.78378 6.94797 7.00349 7.13057 7.18300 7.41439 7.50508 7.71657 7.88943 8.11254 8.45914 8.69240 8.99625 9.60670 11.06629 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.023806 B = 0.004900 C = 0.004671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.879751 B = 5712.406512 C = 5993.370827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.061 3.939 3 Si 0.883 3.117 4 H -0.274 1.274 5 H -0.286 1.286 6 H -0.286 1.286 7 C -0.498 4.498 8 H 0.056 0.944 9 C 0.042 3.958 10 C -0.106 4.106 11 C -0.103 4.103 12 C 0.097 3.903 13 N -0.535 5.535 14 C 0.031 3.969 15 C 0.110 3.890 16 N -0.469 5.469 17 C 0.151 3.849 18 N -0.307 5.307 19 N -0.295 5.295 20 C 0.189 3.811 21 C 0.138 3.862 22 C -0.092 4.092 23 C -0.107 4.107 24 H 0.257 0.743 25 H 0.025 0.975 26 H 0.032 0.968 27 H 0.050 0.950 28 H 0.039 0.961 29 H 0.081 0.919 30 H 0.033 0.967 31 H 0.113 0.887 32 H 0.043 0.957 33 H 0.097 0.903 34 H 0.099 0.901 35 H 0.217 0.783 36 H 0.116 0.884 37 H 0.065 0.935 38 H 0.082 0.918 39 H 0.032 0.968 40 H 0.013 0.987 41 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.712 -6.643 -11.650 13.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.139 4.139 3 Si 0.711 3.289 4 H -0.198 1.198 5 H -0.212 1.212 6 H -0.212 1.212 7 C -0.536 4.536 8 H 0.074 0.926 9 C 0.024 3.976 10 C -0.144 4.144 11 C -0.140 4.140 12 C -0.009 4.009 13 N -0.261 5.261 14 C -0.097 4.097 15 C -0.013 4.013 16 N -0.160 5.160 17 C -0.137 4.137 18 N -0.147 5.147 19 N -0.134 5.134 20 C -0.080 4.080 21 C 0.008 3.992 22 C -0.130 4.130 23 C -0.145 4.145 24 H 0.067 0.933 25 H 0.043 0.957 26 H 0.051 0.949 27 H 0.069 0.931 28 H 0.058 0.942 29 H 0.100 0.900 30 H 0.051 0.949 31 H 0.131 0.869 32 H 0.062 0.938 33 H 0.115 0.885 34 H 0.118 0.882 35 H 0.234 0.766 36 H 0.134 0.866 37 H 0.083 0.917 38 H 0.100 0.900 39 H 0.051 0.949 40 H 0.031 0.969 41 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 3.090 -6.818 -11.573 13.783 hybrid contribution -1.166 1.036 -0.398 1.610 sum 1.924 -5.782 -11.971 13.433 Atomic orbital electron populations 1.69871 1.05817 1.26059 1.51468 1.24916 0.94726 0.98780 0.95472 0.86677 0.80350 0.84382 0.77464 1.19823 1.21227 1.21229 1.21183 0.92810 0.90304 1.49279 0.92551 1.18706 0.92676 0.92178 0.94039 1.21554 0.98266 0.98619 0.95970 1.21551 0.97285 1.01761 0.93421 1.21771 0.93230 0.98338 0.87588 1.62194 1.14830 1.46306 1.02724 1.22555 0.96751 1.01353 0.89056 1.22233 0.81024 0.97843 1.00227 1.46228 1.18968 1.40118 1.10694 1.26143 0.87980 1.02368 0.97206 1.74581 1.22497 1.15086 1.02517 1.74019 1.11480 1.21354 1.06582 1.24853 0.94327 0.96943 0.91854 1.20716 0.93831 0.94573 0.90071 1.21518 0.95949 0.98160 0.97378 1.21531 0.98663 0.99464 0.94861 0.93253 0.95704 0.94886 0.93130 0.94222 0.89998 0.94914 0.86879 0.93840 0.88510 0.88248 0.76647 0.86568 0.91745 0.89952 0.94915 0.96857 0.88781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.12 11.32 55.43 0.63 -23.49 16 2 C 0.06 1.60 5.30 -17.82 -0.09 1.51 16 3 Si 0.88 20.56 29.54 -169.99 -5.02 15.54 16 4 H -0.27 -6.37 7.11 56.52 0.40 -5.96 16 5 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.50 -12.53 6.61 -34.44 -0.23 -12.76 16 8 H 0.06 1.44 6.71 -52.49 -0.35 1.08 16 9 C 0.04 0.97 2.58 -91.77 -0.24 0.73 16 10 C -0.11 -2.02 5.41 -26.72 -0.14 -2.17 16 11 C -0.10 -1.77 4.62 -26.73 -0.12 -1.89 16 12 C 0.10 1.54 1.95 -67.71 -0.13 1.41 16 13 N -0.54 -7.46 4.53 -227.27 -1.03 -8.49 16 14 C 0.03 0.35 5.40 -3.55 -0.02 0.33 16 15 C 0.11 1.01 7.28 -3.90 -0.03 0.98 16 16 N -0.47 -5.69 3.12 -115.43 -0.36 -6.05 16 17 C 0.15 1.77 12.86 -90.59 -1.17 0.61 16 18 N -0.31 -4.85 12.24 29.55 0.36 -4.49 16 19 N -0.29 -4.97 12.21 32.77 0.40 -4.57 16 20 C 0.19 2.77 7.87 -155.21 -1.22 1.55 16 21 C 0.14 1.87 5.16 -4.68 -0.02 1.84 16 22 C -0.09 -1.69 4.80 -26.71 -0.13 -1.82 16 23 C -0.11 -2.27 5.24 -26.71 -0.14 -2.41 16 24 H 0.26 6.72 8.31 -40.82 -0.34 6.38 16 25 H 0.02 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 28 H 0.04 0.60 6.48 -51.93 -0.34 0.26 16 29 H 0.08 1.60 6.62 -51.93 -0.34 1.26 16 30 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.11 1.21 5.65 -51.93 -0.29 0.92 16 32 H 0.04 0.46 8.08 -51.93 -0.42 0.04 16 33 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.10 0.90 8.14 -51.93 -0.42 0.47 16 35 H 0.22 1.46 8.06 -52.48 -0.42 1.04 16 36 H 0.12 1.61 6.63 -51.93 -0.34 1.27 16 37 H 0.06 0.81 8.13 -51.93 -0.42 0.39 16 38 H 0.08 1.74 7.22 -51.93 -0.37 1.37 16 39 H 0.03 0.52 6.11 -51.93 -0.32 0.21 16 40 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 41 H 0.09 2.29 6.07 -51.93 -0.32 1.98 16 LS Contribution 310.43 15.07 4.68 4.68 Total: -1.00 -29.80 310.43 -10.06 -39.87 By element: Atomic # 1 Polarization: 5.14 SS G_CDS: -6.04 Total: -0.90 kcal Atomic # 6 Polarization: -8.40 SS G_CDS: -3.69 Total: -12.09 kcal Atomic # 7 Polarization: -47.10 SS G_CDS: 0.00 Total: -47.10 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -29.80 -10.06 -39.87 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173332033.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.522 kcal (2) G-P(sol) polarization free energy of solvation -29.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.865 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds