Wall clock time and date at job start Mon Mar 30 2020 01:37:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86807 * 119.99677 * 2 1 4 4 H 1.48494 * 109.47218 * 239.99906 * 3 2 1 5 5 H 1.48497 * 109.46970 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47103 * 119.99974 * 3 2 1 7 7 C 1.37876 * 120.00349 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99839 * 180.02562 * 7 2 1 9 9 C 1.50693 * 120.00176 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47430 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.47107 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.47110 * 60.00312 * 11 10 9 13 13 N 1.46503 * 109.47084 * 59.99896 * 12 11 10 14 14 C 1.36224 * 120.13295 * 13.06797 * 13 12 11 15 15 C 1.35710 * 119.25350 * 179.97438 * 14 13 12 16 16 C 1.50702 * 120.23663 * 179.72672 * 15 14 13 17 17 N 1.46894 * 109.47093 * 90.00583 * 16 15 14 18 18 C 1.40068 * 119.52454 * 0.02562 * 15 14 13 19 19 N 1.31387 * 120.25426 * 359.97438 * 18 15 14 20 20 C 1.34341 * 120.76897 * 359.97438 * 19 18 15 21 21 N 1.31441 * 119.76785 * 179.97438 * 20 19 18 22 22 C 1.52995 * 109.47103 * 299.99589 * 12 11 10 23 23 C 1.53000 * 109.47030 * 59.99922 * 9 7 2 24 24 H 0.96997 * 120.00722 * 0.02562 * 1 2 3 25 25 H 1.08997 * 109.47140 * 300.00073 * 9 7 2 26 26 H 1.09008 * 109.46668 * 60.00216 * 10 9 7 27 27 H 1.08997 * 109.47216 * 300.00268 * 10 9 7 28 28 H 1.08997 * 109.47383 * 300.00265 * 11 10 9 29 29 H 1.09006 * 109.47022 * 180.02562 * 11 10 9 30 30 H 1.09000 * 109.47163 * 179.97438 * 12 11 10 31 31 H 1.07995 * 120.36964 * 359.95903 * 14 13 12 32 32 H 1.09004 * 109.47085 * 210.00435 * 16 15 14 33 33 H 1.08997 * 109.46942 * 330.00175 * 16 15 14 34 34 H 1.00896 * 111.00255 * 56.04401 * 17 16 15 35 35 H 1.00899 * 110.99909 * 179.97438 * 17 16 15 36 36 H 1.08005 * 119.87419 * 179.97438 * 18 15 14 37 37 H 0.97004 * 119.99586 * 0.02881 * 21 20 19 38 38 H 1.09005 * 109.47262 * 179.97438 * 22 12 11 39 39 H 1.08997 * 109.47604 * 300.00444 * 22 12 11 40 40 H 1.09006 * 109.47163 * 300.00242 * 23 9 7 41 41 H 1.08997 * 109.47036 * 60.00087 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6966 -1.2124 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0005 10 6 2.2455 -3.6620 0.0005 11 6 1.4805 -4.9870 0.0012 12 6 0.6006 -5.0685 -1.2478 13 7 1.4425 -4.9912 -2.4442 14 6 2.7932 -5.1342 -2.3404 15 6 3.5560 -5.0599 -3.4603 16 6 5.0530 -5.2088 -3.3702 17 7 5.4139 -6.6251 -3.5171 18 6 2.9426 -4.8377 -4.6998 19 7 1.6381 -4.7025 -4.7780 20 6 0.8723 -4.7751 -3.6766 21 7 -0.4308 -4.6365 -3.7775 22 6 -0.3938 -3.9057 -1.2478 23 6 0.3721 -2.5805 -1.2490 24 1 -0.4851 0.8400 -0.0004 25 1 0.6242 -2.5567 0.8903 26 1 2.8721 -3.6042 0.8906 27 1 2.8722 -3.6042 -0.8894 28 1 0.8542 -5.0445 0.8913 29 1 2.1889 -5.8155 0.0016 30 1 0.0559 -6.0127 -1.2476 31 1 3.2518 -5.3044 -1.3775 32 1 5.5242 -4.6295 -4.1643 33 1 5.3966 -4.8448 -2.4020 34 1 5.0501 -7.0035 -4.3788 35 1 6.4134 -6.7513 -3.4606 36 1 3.5443 -4.7772 -5.5947 37 1 -0.8365 -4.4829 -4.6452 38 1 -1.0204 -3.9635 -2.1378 39 1 -1.0201 -3.9631 -0.3576 40 1 -0.3363 -1.7520 -1.2495 41 1 0.9990 -2.5229 -2.1387 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173333751.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:58 Heat of formation + Delta-G solvation = 72.839503 kcal Electronic energy + Delta-G solvation = -22592.650636 eV Core-core repulsion = 19508.202266 eV Total energy + Delta-G solvation = -3084.448371 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.23126 -37.82094 -35.69082 -34.27340 -33.19542 -32.26387 -30.03972 -29.66554 -28.92432 -25.44507 -24.32700 -24.07221 -22.19557 -21.54736 -20.74162 -18.90076 -17.88296 -16.77195 -16.31614 -16.23450 -15.59969 -15.15089 -14.72358 -14.50366 -14.34530 -13.93086 -13.77611 -13.10101 -12.74395 -12.42145 -12.28357 -12.06479 -11.73258 -11.61627 -11.48331 -11.02397 -10.90699 -10.68595 -10.38838 -10.23810 -10.04014 -9.83317 -9.63656 -9.51059 -9.04295 -8.84951 -8.81198 -8.40961 -8.20726 -7.18479 -5.96477 -4.03400 1.07192 1.98331 2.80518 3.30817 3.36269 3.37787 4.02740 4.43551 4.55791 4.62797 4.65986 4.87964 5.03069 5.21682 5.25348 5.32960 5.36601 5.47136 5.60970 5.86543 5.95248 5.99163 6.12356 6.15250 6.26726 6.41788 6.52398 6.63435 6.73744 6.85628 6.96414 7.05091 7.14133 7.23948 7.29731 7.36613 7.63851 7.76463 8.01622 8.17835 8.20474 8.47327 8.83126 8.99784 9.61017 11.08714 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.017014 B = 0.006382 C = 0.005731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1645.324323 B = 4386.528875 C = 4884.123401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.063 3.937 3 Si 0.887 3.113 4 H -0.279 1.279 5 H -0.287 1.287 6 H -0.278 1.278 7 C -0.516 4.516 8 H 0.051 0.949 9 C 0.049 3.951 10 C -0.119 4.119 11 C -0.138 4.138 12 C 0.146 3.854 13 N -0.474 5.474 14 C 0.231 3.769 15 C -0.301 4.301 16 C 0.131 3.869 17 N -0.850 5.850 18 C 0.244 3.756 19 N -0.565 5.565 20 C 0.537 3.463 21 N -0.755 5.755 22 C -0.151 4.151 23 C -0.098 4.098 24 H 0.260 0.740 25 H 0.025 0.975 26 H 0.054 0.946 27 H 0.049 0.951 28 H 0.084 0.916 29 H 0.055 0.945 30 H 0.076 0.924 31 H 0.176 0.824 32 H 0.037 0.963 33 H 0.079 0.921 34 H 0.339 0.661 35 H 0.339 0.661 36 H 0.154 0.846 37 H 0.342 0.658 38 H 0.113 0.887 39 H 0.059 0.941 40 H 0.090 0.910 41 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.426 -12.527 -5.409 16.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.139 4.139 3 Si 0.715 3.285 4 H -0.204 1.204 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.554 4.554 8 H 0.069 0.931 9 C 0.031 3.969 10 C -0.156 4.156 11 C -0.175 4.175 12 C 0.044 3.956 13 N -0.169 5.169 14 C 0.090 3.910 15 C -0.314 4.314 16 C 0.000 4.000 17 N -0.380 5.380 18 C 0.053 3.947 19 N -0.285 5.285 20 C 0.170 3.830 21 N -0.393 5.393 22 C -0.188 4.188 23 C -0.136 4.136 24 H 0.070 0.930 25 H 0.043 0.957 26 H 0.073 0.927 27 H 0.068 0.932 28 H 0.103 0.897 29 H 0.073 0.927 30 H 0.094 0.906 31 H 0.193 0.807 32 H 0.055 0.945 33 H 0.098 0.902 34 H 0.151 0.849 35 H 0.152 0.848 36 H 0.171 0.829 37 H 0.159 0.841 38 H 0.131 0.869 39 H 0.078 0.922 40 H 0.108 0.892 41 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 6.156 -12.354 -4.617 14.555 hybrid contribution 1.848 1.335 -1.060 2.514 sum 8.004 -11.019 -5.677 14.755 Atomic orbital electron populations 1.69863 1.05817 1.26416 1.50481 1.24948 0.94809 0.98925 0.95172 0.86739 0.79688 0.83553 0.78487 1.20438 1.21289 1.20317 1.21129 0.92637 0.90802 1.50805 0.93066 1.18675 0.92490 0.91105 0.94666 1.21906 0.99075 0.94317 1.00313 1.22066 0.99193 0.99147 0.97121 1.21597 0.91814 1.00914 0.81267 1.44717 1.05718 1.57995 1.08482 1.22394 0.82515 0.85562 1.00501 1.19665 0.97113 1.21159 0.93441 1.20218 0.89850 0.88429 1.01521 1.58813 1.17972 1.17385 1.43821 1.23154 0.91173 0.83862 0.96474 1.69881 1.06879 1.23881 1.27851 1.20060 0.91459 0.91775 0.79736 1.70037 1.04629 1.32582 1.32078 1.22405 0.98060 0.94254 1.04126 1.21473 0.99202 0.95255 0.97691 0.93008 0.95664 0.92720 0.93205 0.89737 0.92675 0.90584 0.80686 0.94470 0.90248 0.84866 0.84822 0.82868 0.84059 0.86902 0.92218 0.89194 0.95777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.66 11.32 55.43 0.63 -25.03 16 2 C 0.06 1.75 5.30 -17.82 -0.09 1.66 16 3 Si 0.89 21.48 29.54 -169.99 -5.02 16.46 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 6 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.52 -14.03 8.56 -34.44 -0.29 -14.32 16 8 H 0.05 1.37 7.74 -52.48 -0.41 0.96 16 9 C 0.05 1.18 2.10 -91.77 -0.19 0.99 16 10 C -0.12 -2.25 4.52 -26.73 -0.12 -2.37 16 11 C -0.14 -2.13 4.89 -26.73 -0.13 -2.26 16 12 C 0.15 2.48 3.16 -67.93 -0.21 2.26 16 13 N -0.47 -8.02 2.19 -111.15 -0.24 -8.27 16 14 C 0.23 3.34 7.42 -16.51 -0.12 3.22 16 15 C -0.30 -3.82 5.37 -104.84 -0.56 -4.38 16 16 C 0.13 1.25 6.92 -4.98 -0.03 1.21 16 17 N -0.85 -6.95 9.61 -11.41 -0.11 -7.06 16 18 C 0.24 3.27 10.96 -17.06 -0.19 3.08 16 19 N -0.56 -9.65 10.47 -13.79 -0.14 -9.80 16 20 C 0.54 10.00 7.57 -323.04 -2.44 7.55 16 21 N -0.75 -14.60 10.42 29.73 0.31 -14.29 16 22 C -0.15 -3.05 5.02 -26.70 -0.13 -3.18 16 23 C -0.10 -2.37 4.80 -26.70 -0.13 -2.50 16 24 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 25 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 26 H 0.05 1.00 8.14 -51.92 -0.42 0.58 16 27 H 0.05 0.93 5.17 -51.93 -0.27 0.66 16 28 H 0.08 1.28 8.14 -51.93 -0.42 0.85 16 29 H 0.05 0.69 6.86 -51.93 -0.36 0.34 16 30 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 31 H 0.18 2.24 5.05 -52.49 -0.27 1.97 16 32 H 0.04 0.31 8.09 -51.93 -0.42 -0.11 16 33 H 0.08 0.77 8.08 -51.93 -0.42 0.35 16 34 H 0.34 2.53 8.98 -39.29 -0.35 2.17 16 35 H 0.34 2.09 9.08 -39.29 -0.36 1.73 16 36 H 0.15 1.48 8.06 -52.48 -0.42 1.06 16 37 H 0.34 6.32 8.90 -40.82 -0.36 5.96 16 38 H 0.11 2.40 5.07 -51.93 -0.26 2.13 16 39 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 40 H 0.09 2.51 6.07 -51.93 -0.32 2.19 16 41 H 0.02 0.61 7.13 -51.93 -0.37 0.24 16 LS Contribution 314.78 15.07 4.74 4.74 Total: -1.00 -31.18 314.78 -10.33 -41.51 By element: Atomic # 1 Polarization: 16.59 SS G_CDS: -5.83 Total: 10.76 kcal Atomic # 6 Polarization: -4.37 SS G_CDS: -4.66 Total: -9.03 kcal Atomic # 7 Polarization: -64.88 SS G_CDS: 0.44 Total: -64.44 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -31.18 -10.33 -41.51 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173333751.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.348 kcal (2) G-P(sol) polarization free energy of solvation -31.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.509 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds