Wall clock time and date at job start Mon Mar 30 2020 01:37:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86807 * 119.99677 * 2 1 4 4 H 1.48494 * 109.47218 * 239.99906 * 3 2 1 5 5 H 1.48497 * 109.46970 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47103 * 119.99974 * 3 2 1 7 7 C 1.37876 * 120.00349 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99839 * 180.02562 * 7 2 1 9 9 C 1.50693 * 120.00176 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47430 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.47107 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.47110 * 60.00312 * 11 10 9 13 13 N 1.46503 * 109.47084 * 59.99896 * 12 11 10 14 14 C 1.36224 * 120.13295 * 13.06797 * 13 12 11 15 15 C 1.35710 * 119.25350 * 179.97438 * 14 13 12 16 16 C 1.50702 * 120.23663 * 179.72672 * 15 14 13 17 17 N 1.46894 * 109.47093 * 90.00583 * 16 15 14 18 18 C 1.40068 * 119.52454 * 0.02562 * 15 14 13 19 19 N 1.31387 * 120.25426 * 359.97438 * 18 15 14 20 20 C 1.34341 * 120.76897 * 359.97438 * 19 18 15 21 21 N 1.31441 * 119.76785 * 179.97438 * 20 19 18 22 22 C 1.52995 * 109.47103 * 299.99589 * 12 11 10 23 23 C 1.53000 * 109.47030 * 59.99922 * 9 7 2 24 24 H 0.96997 * 120.00722 * 0.02562 * 1 2 3 25 25 H 1.08997 * 109.47140 * 300.00073 * 9 7 2 26 26 H 1.09008 * 109.46668 * 60.00216 * 10 9 7 27 27 H 1.08997 * 109.47216 * 300.00268 * 10 9 7 28 28 H 1.08997 * 109.47383 * 300.00265 * 11 10 9 29 29 H 1.09006 * 109.47022 * 180.02562 * 11 10 9 30 30 H 1.09000 * 109.47163 * 179.97438 * 12 11 10 31 31 H 1.07995 * 120.36964 * 359.95903 * 14 13 12 32 32 H 1.09004 * 109.47085 * 210.00435 * 16 15 14 33 33 H 1.08997 * 109.46942 * 330.00175 * 16 15 14 34 34 H 1.00896 * 111.00255 * 56.04401 * 17 16 15 35 35 H 1.00899 * 110.99909 * 179.97438 * 17 16 15 36 36 H 1.08005 * 119.87419 * 179.97438 * 18 15 14 37 37 H 0.97004 * 119.99586 * 0.02881 * 21 20 19 38 38 H 1.09005 * 109.47262 * 179.97438 * 22 12 11 39 39 H 1.08997 * 109.47604 * 300.00444 * 22 12 11 40 40 H 1.09006 * 109.47163 * 300.00242 * 23 9 7 41 41 H 1.08997 * 109.47036 * 60.00087 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6966 -1.2124 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0005 10 6 2.2455 -3.6620 0.0005 11 6 1.4805 -4.9870 0.0012 12 6 0.6006 -5.0685 -1.2478 13 7 1.4425 -4.9912 -2.4442 14 6 2.7932 -5.1342 -2.3404 15 6 3.5560 -5.0599 -3.4603 16 6 5.0530 -5.2088 -3.3702 17 7 5.4139 -6.6251 -3.5171 18 6 2.9426 -4.8377 -4.6998 19 7 1.6381 -4.7025 -4.7780 20 6 0.8723 -4.7751 -3.6766 21 7 -0.4308 -4.6365 -3.7775 22 6 -0.3938 -3.9057 -1.2478 23 6 0.3721 -2.5805 -1.2490 24 1 -0.4851 0.8400 -0.0004 25 1 0.6242 -2.5567 0.8903 26 1 2.8721 -3.6042 0.8906 27 1 2.8722 -3.6042 -0.8894 28 1 0.8542 -5.0445 0.8913 29 1 2.1889 -5.8155 0.0016 30 1 0.0559 -6.0127 -1.2476 31 1 3.2518 -5.3044 -1.3775 32 1 5.5242 -4.6295 -4.1643 33 1 5.3966 -4.8448 -2.4020 34 1 5.0501 -7.0035 -4.3788 35 1 6.4134 -6.7513 -3.4606 36 1 3.5443 -4.7772 -5.5947 37 1 -0.8365 -4.4829 -4.6452 38 1 -1.0204 -3.9635 -2.1378 39 1 -1.0201 -3.9631 -0.3576 40 1 -0.3363 -1.7520 -1.2495 41 1 0.9990 -2.5229 -2.1387 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173333751.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:56 Heat of formation + Delta-G solvation = 52.843679 kcal Electronic energy + Delta-G solvation = -22593.517720 eV Core-core repulsion = 19508.202266 eV Total energy + Delta-G solvation = -3085.315455 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 1.53 seconds Orbital eigenvalues (eV) -42.48713 -39.24662 -36.72353 -35.86450 -34.26224 -34.03418 -31.58554 -31.13672 -30.25022 -27.11202 -25.70936 -25.14966 -23.53961 -23.03035 -22.31502 -20.40319 -19.09760 -18.42703 -17.93361 -17.22173 -16.94264 -16.62659 -16.20499 -15.71545 -15.46486 -15.14616 -15.00268 -14.50758 -14.36994 -14.04772 -13.44914 -13.30495 -13.25847 -13.01077 -12.95577 -12.77456 -12.60452 -12.39846 -12.01365 -11.95142 -11.57390 -11.42371 -11.21037 -10.86678 -10.78350 -10.59666 -10.39217 -9.85930 -9.45345 -8.45338 -8.08154 -6.22389 -0.06342 0.83760 1.37153 1.38281 1.45533 1.56453 2.40652 2.81432 3.18393 3.44245 3.57436 3.73432 3.94336 3.95698 4.01196 4.06115 4.23019 4.36017 4.51503 4.59756 4.66099 4.73928 4.78419 4.85632 4.99658 5.02270 5.07740 5.18345 5.23987 5.35537 5.37425 5.47598 5.61517 5.68647 5.85237 5.97971 6.05952 6.19082 6.36501 6.39846 6.78154 6.91950 6.97516 7.45591 7.49504 8.95005 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.017014 B = 0.006382 C = 0.005731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1645.324323 B = 4386.528875 C = 4884.123401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.009 3.991 3 Si 0.947 3.053 4 H -0.275 1.275 5 H -0.288 1.288 6 H -0.265 1.265 7 C -0.531 4.531 8 H 0.054 0.946 9 C 0.044 3.956 10 C -0.110 4.110 11 C -0.127 4.127 12 C 0.151 3.849 13 N -0.481 5.481 14 C 0.210 3.790 15 C -0.286 4.286 16 C 0.135 3.865 17 N -0.854 5.854 18 C 0.244 3.756 19 N -0.596 5.596 20 C 0.527 3.473 21 N -0.788 5.788 22 C -0.145 4.145 23 C -0.078 4.078 24 H 0.257 0.743 25 H -0.005 1.005 26 H 0.064 0.936 27 H 0.054 0.946 28 H 0.091 0.909 29 H 0.099 0.901 30 H 0.093 0.907 31 H 0.196 0.804 32 H 0.055 0.945 33 H 0.082 0.918 34 H 0.344 0.656 35 H 0.353 0.647 36 H 0.193 0.807 37 H 0.339 0.661 38 H 0.103 0.897 39 H 0.057 0.943 40 H 0.043 0.957 41 H 0.001 0.999 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.501 -14.015 -5.401 18.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.189 4.189 3 Si 0.773 3.227 4 H -0.200 1.200 5 H -0.214 1.214 6 H -0.190 1.190 7 C -0.569 4.569 8 H 0.072 0.928 9 C 0.026 3.974 10 C -0.147 4.147 11 C -0.165 4.165 12 C 0.049 3.951 13 N -0.176 5.176 14 C 0.071 3.929 15 C -0.298 4.298 16 C 0.003 3.997 17 N -0.386 5.386 18 C 0.057 3.943 19 N -0.318 5.318 20 C 0.160 3.840 21 N -0.428 5.428 22 C -0.183 4.183 23 C -0.116 4.116 24 H 0.066 0.934 25 H 0.014 0.986 26 H 0.083 0.917 27 H 0.072 0.928 28 H 0.109 0.891 29 H 0.118 0.882 30 H 0.111 0.889 31 H 0.213 0.787 32 H 0.073 0.927 33 H 0.100 0.900 34 H 0.157 0.843 35 H 0.168 0.832 36 H 0.210 0.790 37 H 0.155 0.845 38 H 0.121 0.879 39 H 0.075 0.925 40 H 0.061 0.939 41 H 0.020 0.980 Dipole moment (debyes) X Y Z Total from point charges 9.314 -13.864 -4.603 17.325 hybrid contribution 0.990 1.801 -1.121 2.341 sum 10.304 -12.063 -5.723 16.865 Atomic orbital electron populations 1.70038 1.07272 1.26836 1.51609 1.25759 0.95569 1.02429 0.95176 0.85778 0.78498 0.79533 0.78879 1.20006 1.21418 1.19027 1.21605 0.93014 0.92333 1.49976 0.92792 1.18656 0.93142 0.92569 0.93028 1.21741 0.98054 0.93911 1.00993 1.22019 0.99537 0.98506 0.96394 1.21490 0.91677 0.99689 0.82272 1.44711 1.06683 1.58504 1.07690 1.22892 0.81549 0.86334 1.02138 1.20114 0.98821 1.18283 0.92565 1.20223 0.87338 0.89634 1.02471 1.58733 1.19228 1.16307 1.44310 1.23867 0.90332 0.81630 0.98444 1.69900 1.08585 1.25890 1.27385 1.20316 0.91690 0.91205 0.80757 1.70004 1.05692 1.35157 1.31988 1.22241 0.98624 0.93889 1.03557 1.21137 0.97989 0.95826 0.96685 0.93401 0.98637 0.91735 0.92771 0.89086 0.88224 0.88901 0.78717 0.92686 0.89954 0.84294 0.83250 0.79017 0.84492 0.87930 0.92488 0.93863 0.98011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.11 11.32 21.45 0.24 -54.87 16 2 C 0.01 0.51 5.30 84.66 0.45 0.96 16 3 Si 0.95 44.45 29.54 68.60 2.03 46.48 16 4 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 5 H -0.29 -13.48 7.11 99.48 0.71 -12.78 16 6 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 7 C -0.53 -29.18 8.56 25.60 0.22 -28.96 16 8 H 0.05 2.86 7.74 -2.91 -0.02 2.83 16 9 C 0.04 2.18 2.10 -11.54 -0.02 2.16 16 10 C -0.11 -3.95 4.52 30.59 0.14 -3.81 16 11 C -0.13 -3.57 4.89 30.59 0.15 -3.42 16 12 C 0.15 4.93 3.16 44.99 0.14 5.07 16 13 N -0.48 -15.62 2.19 -505.58 -1.11 -16.72 16 14 C 0.21 5.47 7.42 83.43 0.62 6.09 16 15 C -0.29 -6.35 5.37 -20.01 -0.11 -6.45 16 16 C 0.13 2.01 6.92 85.56 0.59 2.60 16 17 N -0.85 -10.51 9.61 -190.01 -1.83 -12.33 16 18 C 0.24 5.95 10.96 85.20 0.93 6.88 16 19 N -0.60 -19.91 10.47 -197.53 -2.07 -21.98 16 20 C 0.53 19.60 7.57 261.57 1.98 21.58 16 21 N -0.79 -31.48 10.42 -59.87 -0.62 -32.11 16 22 C -0.15 -6.03 5.02 30.61 0.15 -5.88 16 23 C -0.08 -3.92 4.80 30.61 0.15 -3.77 16 24 H 0.26 14.87 8.31 -92.71 -0.77 14.10 16 25 H 0.00 -0.25 8.14 -2.39 -0.02 -0.27 16 26 H 0.06 2.20 8.14 -2.38 -0.02 2.18 16 27 H 0.05 1.91 5.17 -2.39 -0.01 1.89 16 28 H 0.09 2.50 8.14 -2.39 -0.02 2.48 16 29 H 0.10 2.01 6.86 -2.38 -0.02 1.99 16 30 H 0.09 2.76 8.14 -2.39 -0.02 2.74 16 31 H 0.20 4.17 5.05 -2.91 -0.01 4.15 16 32 H 0.06 0.66 8.09 -2.38 -0.02 0.64 16 33 H 0.08 1.24 8.08 -2.39 -0.02 1.22 16 34 H 0.34 3.79 8.98 -89.70 -0.81 2.98 16 35 H 0.35 2.93 9.08 -89.69 -0.81 2.12 16 36 H 0.19 2.99 8.06 -2.91 -0.02 2.97 16 37 H 0.34 13.17 8.90 -92.71 -0.82 12.34 16 38 H 0.10 4.55 5.07 -2.38 -0.01 4.54 16 39 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 40 H 0.04 2.55 6.07 -2.38 -0.01 2.54 16 41 H 0.00 0.06 7.13 -2.39 -0.02 0.04 16 Total: -1.00 -71.16 314.78 0.67 -70.49 By element: Atomic # 1 Polarization: 29.36 SS G_CDS: -1.36 Total: 28.00 kcal Atomic # 6 Polarization: -12.35 SS G_CDS: 5.39 Total: -6.96 kcal Atomic # 7 Polarization: -132.62 SS G_CDS: -5.38 Total: -138.00 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.48 kcal Total: -71.16 0.67 -70.49 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173333751.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.334 kcal (2) G-P(sol) polarization free energy of solvation -71.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.491 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.53 seconds