Wall clock time and date at job start Mon Mar 30 2020 01:35:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 120.00188 * 2 1 4 4 H 1.48499 * 109.47051 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47021 * 300.00356 * 3 2 1 6 6 H 1.48501 * 109.46773 * 60.00162 * 3 2 1 7 7 C 1.37876 * 119.99474 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99485 * 179.97438 * 7 2 1 9 9 C 1.50690 * 120.00511 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47179 * 59.99975 * 9 7 2 11 11 C 1.53005 * 109.47379 * 179.97438 * 10 9 7 12 12 C 1.52996 * 109.47076 * 300.00384 * 11 10 9 13 13 N 1.46909 * 109.46929 * 179.97438 * 12 11 10 14 14 C 1.46966 * 110.99626 * 52.66455 * 13 12 11 15 15 C 1.53370 * 109.84020 * 53.24543 * 14 13 12 16 16 N 1.46734 * 108.24794 * 50.14719 * 15 14 13 17 17 N 1.28027 * 128.73901 * 163.29240 * 16 15 14 18 18 N 1.28948 * 110.08104 * 180.18569 * 17 16 15 19 19 C 1.34119 * 108.96985 * 359.93006 * 18 17 16 20 20 C 1.34286 * 106.21535 * 359.97438 * 19 18 17 21 21 C 1.47422 * 110.99928 * 176.71868 * 13 12 11 22 22 C 1.53002 * 109.47338 * 59.99983 * 12 11 10 23 23 C 1.52997 * 109.46903 * 299.99594 * 22 12 11 24 24 H 0.97001 * 119.99856 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.47717 * 300.00503 * 9 7 2 26 26 H 1.08995 * 109.47407 * 300.00592 * 10 9 7 27 27 H 1.09002 * 109.46710 * 60.00594 * 10 9 7 28 28 H 1.08999 * 109.46793 * 179.97438 * 11 10 9 29 29 H 1.08999 * 109.46741 * 60.00283 * 11 10 9 30 30 H 1.08999 * 109.47253 * 299.99586 * 12 11 10 31 31 H 1.09001 * 109.41268 * 173.35983 * 14 13 12 32 32 H 1.09001 * 109.41407 * 293.13314 * 14 13 12 33 33 H 1.09000 * 109.70980 * 169.83184 * 15 14 13 34 34 H 1.08990 * 109.70768 * 290.45871 * 15 14 13 35 35 H 1.07999 * 126.89393 * 179.97438 * 19 18 17 36 36 H 1.09006 * 109.75409 * 45.24670 * 21 13 12 37 37 H 1.09002 * 109.75126 * 165.98201 * 21 13 12 38 38 H 1.08995 * 109.47415 * 179.97438 * 22 12 11 39 39 H 1.08999 * 109.47273 * 59.99615 * 22 12 11 40 40 H 1.08994 * 109.47520 * 299.99751 * 23 22 12 41 41 H 1.09005 * 109.46968 * 179.97438 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8905 2.3963 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 0.3709 -2.5799 -1.2495 11 6 -0.3937 -3.9052 -1.2498 12 6 0.6009 -5.0678 -1.2507 13 7 -0.1332 -6.3403 -1.2505 14 6 -1.1179 -6.3804 -2.3407 15 6 -0.4310 -6.0618 -3.6745 16 7 0.7574 -6.9141 -3.7944 17 7 1.4441 -7.1889 -4.8394 18 7 2.4156 -7.9804 -4.5352 19 6 2.3700 -8.2414 -3.2205 20 6 1.3153 -7.5634 -2.7399 21 6 0.7929 -7.4845 -1.3301 22 6 1.4810 -4.9870 -0.0017 23 6 2.2456 -3.6618 -0.0015 24 1 -0.4850 0.8401 0.0004 25 1 0.6246 -2.5571 0.8896 26 1 -0.3374 -1.7514 -1.2491 27 1 0.9973 -2.5221 -2.1396 28 1 -1.0210 -3.9625 -2.1394 29 1 -1.0200 -3.9635 -0.3596 30 1 1.2272 -5.0094 -2.1409 31 1 -1.5628 -7.3742 -2.3907 32 1 -1.8990 -5.6442 -2.1507 33 1 -1.1147 -6.2666 -4.4983 34 1 -0.1347 -5.0131 -3.6941 35 1 3.0460 -8.8707 -2.6606 36 1 1.6218 -7.3365 -0.6378 37 1 0.2640 -8.4045 -1.0811 38 1 2.1893 -5.8155 -0.0021 39 1 0.8547 -5.0454 0.8884 40 1 2.8719 -3.6035 -0.8916 41 1 2.8722 -3.6041 0.8886 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173337297.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:14 Heat of formation + Delta-G solvation = 99.042559 kcal Electronic energy + Delta-G solvation = -22456.903917 eV Core-core repulsion = 19373.591796 eV Total energy + Delta-G solvation = -3083.312121 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.50996 -39.49126 -36.50729 -34.10359 -32.69182 -31.68977 -30.33209 -29.57558 -28.64371 -25.59900 -24.75949 -23.45542 -22.60611 -21.65360 -21.09929 -19.28632 -18.58555 -17.48677 -16.87749 -16.38416 -15.57233 -15.33474 -14.95531 -14.57389 -14.43849 -13.93783 -13.48955 -13.22328 -12.96701 -12.81499 -12.70623 -12.08881 -11.86983 -11.74771 -11.45185 -11.10161 -11.09124 -10.98490 -10.74112 -10.71369 -10.44990 -10.26773 -10.05668 -9.88558 -9.45250 -9.15779 -8.96062 -8.73085 -8.59218 -8.33898 -6.02003 -4.07623 1.55853 2.23166 2.54058 3.27022 3.35604 3.39656 3.66583 4.07166 4.41357 4.44677 4.55147 4.61669 4.90731 5.01997 5.12799 5.22449 5.27790 5.31005 5.36037 5.46239 5.56616 5.70891 5.72518 6.00911 6.10655 6.11598 6.18260 6.28361 6.36757 6.50287 6.55753 6.68280 6.79624 6.87321 6.98182 7.09107 7.18515 7.42804 7.70994 7.96664 8.09344 8.43414 8.48686 8.96590 9.57480 11.03698 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.027968 B = 0.004611 C = 0.004532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.910557 B = 6071.455879 C = 6176.758571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.061 3.939 3 Si 0.888 3.112 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.512 4.512 8 H 0.054 0.946 9 C 0.049 3.951 10 C -0.109 4.109 11 C -0.112 4.112 12 C 0.082 3.918 13 N -0.526 5.526 14 C 0.040 3.960 15 C 0.072 3.928 16 N -0.281 5.281 17 N -0.084 5.084 18 N -0.279 5.279 19 C -0.044 4.044 20 C -0.051 4.051 21 C 0.119 3.881 22 C -0.106 4.106 23 C -0.108 4.108 24 H 0.259 0.741 25 H 0.027 0.973 26 H 0.096 0.904 27 H 0.029 0.971 28 H 0.041 0.959 29 H 0.066 0.934 30 H 0.036 0.964 31 H 0.085 0.915 32 H 0.115 0.885 33 H 0.108 0.892 34 H 0.108 0.892 35 H 0.189 0.811 36 H 0.110 0.890 37 H 0.100 0.900 38 H 0.046 0.954 39 H 0.067 0.933 40 H 0.044 0.956 41 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.191 -14.509 -2.543 15.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.139 4.139 3 Si 0.716 3.284 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.551 4.551 8 H 0.072 0.928 9 C 0.031 3.969 10 C -0.147 4.147 11 C -0.150 4.150 12 C -0.025 4.025 13 N -0.247 5.247 14 C -0.089 4.089 15 C -0.050 4.050 16 N -0.077 5.077 17 N -0.063 5.063 18 N -0.145 5.145 19 C -0.201 4.201 20 C -0.185 4.185 21 C -0.011 4.011 22 C -0.143 4.143 23 C -0.146 4.146 24 H 0.069 0.931 25 H 0.045 0.955 26 H 0.114 0.886 27 H 0.048 0.952 28 H 0.060 0.940 29 H 0.085 0.915 30 H 0.054 0.946 31 H 0.104 0.896 32 H 0.133 0.867 33 H 0.126 0.874 34 H 0.126 0.874 35 H 0.206 0.794 36 H 0.128 0.872 37 H 0.118 0.882 38 H 0.064 0.936 39 H 0.086 0.914 40 H 0.062 0.938 41 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -3.464 -14.160 -3.639 15.025 hybrid contribution 0.745 0.920 0.174 1.197 sum -2.719 -13.240 -3.464 13.953 Atomic orbital electron populations 1.69870 1.05822 1.26216 1.51110 1.24952 0.94839 0.98987 0.95162 0.86604 0.80232 0.84023 0.77563 1.19851 1.21094 1.21030 1.21272 0.92932 0.90771 1.50080 0.92809 1.18650 0.92559 0.91496 0.94200 1.21627 0.99661 0.94551 0.98858 1.21811 0.97224 0.95280 1.00656 1.21892 0.94985 0.87384 0.98197 1.62530 1.16240 1.03208 1.42719 1.22688 0.96181 1.04286 0.85769 1.23113 0.84015 0.95270 1.02637 1.47386 1.22057 1.32508 1.05710 1.78117 1.02548 1.14194 1.11419 1.75309 1.14162 1.11352 1.13642 1.23050 0.99806 1.05029 0.92198 1.23008 0.99079 1.01521 0.94869 1.21187 0.96750 0.95405 0.87740 1.21623 0.97500 0.98279 0.96931 1.21625 0.98665 0.94130 1.00189 0.93132 0.95458 0.88622 0.95169 0.94006 0.91497 0.94570 0.89611 0.86696 0.87373 0.87386 0.79391 0.87216 0.88214 0.93564 0.91390 0.93759 0.93051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.62 11.32 55.43 0.63 -23.99 16 2 C 0.06 1.66 5.30 -17.82 -0.09 1.56 16 3 Si 0.89 20.97 29.54 -169.99 -5.02 15.95 16 4 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.51 -13.70 8.56 -34.45 -0.29 -13.99 16 8 H 0.05 1.44 7.74 -52.48 -0.41 1.04 16 9 C 0.05 1.16 2.10 -91.77 -0.19 0.97 16 10 C -0.11 -2.37 4.98 -26.73 -0.13 -2.50 16 11 C -0.11 -1.88 4.53 -26.73 -0.12 -2.00 16 12 C 0.08 1.23 1.24 -67.71 -0.08 1.15 16 13 N -0.53 -6.26 4.84 -227.42 -1.10 -7.36 16 14 C 0.04 0.40 5.30 -3.60 -0.02 0.38 16 15 C 0.07 0.79 6.38 -3.72 -0.02 0.77 16 16 N -0.28 -3.86 3.54 -56.89 -0.20 -4.06 16 17 N -0.08 -1.36 13.26 60.35 0.80 -0.56 16 18 N -0.28 -4.50 12.43 30.10 0.37 -4.13 16 19 C -0.04 -0.57 12.03 -17.95 -0.22 -0.79 16 20 C -0.05 -0.65 5.98 -82.29 -0.49 -1.14 16 21 C 0.12 1.25 6.05 -4.76 -0.03 1.22 16 22 C -0.11 -1.69 5.11 -26.73 -0.14 -1.82 16 23 C -0.11 -2.13 5.14 -26.73 -0.14 -2.27 16 24 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 25 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.10 2.37 6.07 -51.93 -0.32 2.06 16 27 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.04 0.61 5.58 -51.93 -0.29 0.32 16 29 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 30 H 0.04 0.61 6.16 -51.93 -0.32 0.29 16 31 H 0.09 0.71 8.07 -51.93 -0.42 0.29 16 32 H 0.12 1.05 6.64 -51.93 -0.34 0.71 16 33 H 0.11 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.11 1.32 6.18 -51.93 -0.32 1.00 16 35 H 0.19 1.75 8.06 -52.49 -0.42 1.33 16 36 H 0.11 1.11 5.85 -51.93 -0.30 0.80 16 37 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.05 0.65 6.21 -51.93 -0.32 0.32 16 39 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 40 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 308.98 15.07 4.66 4.66 Total: -1.00 -30.15 308.98 -7.82 -37.97 By element: Atomic # 1 Polarization: 5.97 SS G_CDS: -5.98 Total: -0.01 kcal Atomic # 6 Polarization: -16.49 SS G_CDS: -1.97 Total: -18.47 kcal Atomic # 7 Polarization: -40.60 SS G_CDS: 0.50 Total: -40.10 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -30.15 -7.82 -37.97 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173337297.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.012 kcal (2) G-P(sol) polarization free energy of solvation -30.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.969 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds