Wall clock time and date at job start Mon Mar 30 2020 01:35:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 120.00188 * 2 1 4 4 H 1.48499 * 109.47051 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47021 * 300.00356 * 3 2 1 6 6 H 1.48501 * 109.46773 * 60.00162 * 3 2 1 7 7 C 1.37876 * 119.99474 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99485 * 179.97438 * 7 2 1 9 9 C 1.50690 * 120.00511 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47179 * 59.99975 * 9 7 2 11 11 C 1.53005 * 109.47379 * 179.97438 * 10 9 7 12 12 C 1.52996 * 109.47076 * 300.00384 * 11 10 9 13 13 N 1.46909 * 109.46929 * 179.97438 * 12 11 10 14 14 C 1.46966 * 110.99626 * 52.66455 * 13 12 11 15 15 C 1.53370 * 109.84020 * 53.24543 * 14 13 12 16 16 N 1.46734 * 108.24794 * 50.14719 * 15 14 13 17 17 N 1.28027 * 128.73901 * 163.29240 * 16 15 14 18 18 N 1.28948 * 110.08104 * 180.18569 * 17 16 15 19 19 C 1.34119 * 108.96985 * 359.93006 * 18 17 16 20 20 C 1.34286 * 106.21535 * 359.97438 * 19 18 17 21 21 C 1.47422 * 110.99928 * 176.71868 * 13 12 11 22 22 C 1.53002 * 109.47338 * 59.99983 * 12 11 10 23 23 C 1.52997 * 109.46903 * 299.99594 * 22 12 11 24 24 H 0.97001 * 119.99856 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.47717 * 300.00503 * 9 7 2 26 26 H 1.08995 * 109.47407 * 300.00592 * 10 9 7 27 27 H 1.09002 * 109.46710 * 60.00594 * 10 9 7 28 28 H 1.08999 * 109.46793 * 179.97438 * 11 10 9 29 29 H 1.08999 * 109.46741 * 60.00283 * 11 10 9 30 30 H 1.08999 * 109.47253 * 299.99586 * 12 11 10 31 31 H 1.09001 * 109.41268 * 173.35983 * 14 13 12 32 32 H 1.09001 * 109.41407 * 293.13314 * 14 13 12 33 33 H 1.09000 * 109.70980 * 169.83184 * 15 14 13 34 34 H 1.08990 * 109.70768 * 290.45871 * 15 14 13 35 35 H 1.07999 * 126.89393 * 179.97438 * 19 18 17 36 36 H 1.09006 * 109.75409 * 45.24670 * 21 13 12 37 37 H 1.09002 * 109.75126 * 165.98201 * 21 13 12 38 38 H 1.08995 * 109.47415 * 179.97438 * 22 12 11 39 39 H 1.08999 * 109.47273 * 59.99615 * 22 12 11 40 40 H 1.08994 * 109.47520 * 299.99751 * 23 22 12 41 41 H 1.09005 * 109.46968 * 179.97438 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8905 2.3963 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 0.3709 -2.5799 -1.2495 11 6 -0.3937 -3.9052 -1.2498 12 6 0.6009 -5.0678 -1.2507 13 7 -0.1332 -6.3403 -1.2505 14 6 -1.1179 -6.3804 -2.3407 15 6 -0.4310 -6.0618 -3.6745 16 7 0.7574 -6.9141 -3.7944 17 7 1.4441 -7.1889 -4.8394 18 7 2.4156 -7.9804 -4.5352 19 6 2.3700 -8.2414 -3.2205 20 6 1.3153 -7.5634 -2.7399 21 6 0.7929 -7.4845 -1.3301 22 6 1.4810 -4.9870 -0.0017 23 6 2.2456 -3.6618 -0.0015 24 1 -0.4850 0.8401 0.0004 25 1 0.6246 -2.5571 0.8896 26 1 -0.3374 -1.7514 -1.2491 27 1 0.9973 -2.5221 -2.1396 28 1 -1.0210 -3.9625 -2.1394 29 1 -1.0200 -3.9635 -0.3596 30 1 1.2272 -5.0094 -2.1409 31 1 -1.5628 -7.3742 -2.3907 32 1 -1.8990 -5.6442 -2.1507 33 1 -1.1147 -6.2666 -4.4983 34 1 -0.1347 -5.0131 -3.6941 35 1 3.0460 -8.8707 -2.6606 36 1 1.6218 -7.3365 -0.6378 37 1 0.2640 -8.4045 -1.0811 38 1 2.1893 -5.8155 -0.0021 39 1 0.8547 -5.0454 0.8884 40 1 2.8719 -3.6035 -0.8916 41 1 2.8722 -3.6041 0.8886 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173337297.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:13 Heat of formation + Delta-G solvation = 78.807472 kcal Electronic energy + Delta-G solvation = -22457.781376 eV Core-core repulsion = 19373.591796 eV Total energy + Delta-G solvation = -3084.189580 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -44.51561 -40.64059 -37.92766 -35.24614 -34.38655 -32.84525 -31.62741 -30.92233 -30.01239 -26.99374 -26.00027 -24.69292 -23.61515 -23.10368 -22.43853 -20.80375 -19.77830 -18.55598 -18.28824 -17.84877 -16.81792 -16.47904 -16.26653 -15.96418 -15.42238 -15.09060 -14.74573 -14.60017 -14.42560 -14.28447 -13.76285 -13.38929 -13.23747 -13.01826 -12.91700 -12.75562 -12.43893 -12.28753 -12.25702 -12.05525 -11.95928 -11.82956 -11.66224 -11.24029 -11.06422 -10.73654 -10.47404 -10.36620 -10.12919 -9.58887 -8.08525 -6.21215 0.56297 1.32694 1.37234 1.40340 1.50333 1.52553 2.42310 2.71645 3.18225 3.21637 3.55471 3.67159 3.78033 3.93237 3.94273 4.13259 4.25277 4.29373 4.36726 4.51300 4.55830 4.62841 4.69276 4.74453 4.78385 4.82743 4.84124 4.96757 5.05110 5.17110 5.21437 5.30581 5.38903 5.48061 5.57819 5.60782 5.68521 5.89872 5.94804 6.05105 6.21646 6.42794 6.91015 7.44538 7.46580 8.95217 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.027968 B = 0.004611 C = 0.004532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.910557 B = 6071.455879 C = 6176.758571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.016 3.984 3 Si 0.945 3.055 4 H -0.272 1.272 5 H -0.281 1.281 6 H -0.279 1.279 7 C -0.536 4.536 8 H 0.044 0.956 9 C 0.046 3.954 10 C -0.100 4.100 11 C -0.101 4.101 12 C 0.098 3.902 13 N -0.523 5.523 14 C 0.042 3.958 15 C 0.067 3.933 16 N -0.282 5.282 17 N -0.121 5.121 18 N -0.312 5.312 19 C -0.049 4.049 20 C -0.049 4.049 21 C 0.122 3.878 22 C -0.099 4.099 23 C -0.102 4.102 24 H 0.260 0.740 25 H 0.000 1.000 26 H 0.062 0.938 27 H 0.014 0.986 28 H 0.066 0.934 29 H 0.062 0.938 30 H 0.019 0.981 31 H 0.112 0.888 32 H 0.125 0.875 33 H 0.131 0.869 34 H 0.092 0.908 35 H 0.221 0.779 36 H 0.118 0.882 37 H 0.133 0.867 38 H 0.075 0.925 39 H 0.069 0.931 40 H 0.033 0.967 41 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.678 -16.272 -2.011 16.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.182 4.182 3 Si 0.771 3.229 4 H -0.197 1.197 5 H -0.207 1.207 6 H -0.204 1.204 7 C -0.574 4.574 8 H 0.062 0.938 9 C 0.027 3.973 10 C -0.139 4.139 11 C -0.139 4.139 12 C -0.010 4.010 13 N -0.244 5.244 14 C -0.087 4.087 15 C -0.055 4.055 16 N -0.078 5.078 17 N -0.100 5.100 18 N -0.178 5.178 19 C -0.206 4.206 20 C -0.183 4.183 21 C -0.007 4.007 22 C -0.137 4.137 23 C -0.140 4.140 24 H 0.069 0.931 25 H 0.018 0.982 26 H 0.081 0.919 27 H 0.033 0.967 28 H 0.085 0.915 29 H 0.081 0.919 30 H 0.037 0.963 31 H 0.130 0.870 32 H 0.143 0.857 33 H 0.149 0.851 34 H 0.110 0.890 35 H 0.237 0.763 36 H 0.136 0.864 37 H 0.151 0.849 38 H 0.093 0.907 39 H 0.088 0.912 40 H 0.052 0.948 41 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -3.956 -15.927 -3.122 16.705 hybrid contribution 0.895 1.483 0.042 1.732 sum -3.061 -14.444 -3.080 15.083 Atomic orbital electron populations 1.69990 1.06833 1.26874 1.51535 1.25639 0.95663 1.01937 0.95000 0.85705 0.79074 0.80428 0.77658 1.19655 1.20739 1.20445 1.21662 0.92822 0.92723 1.50211 0.93758 1.18628 0.93052 0.91915 0.93682 1.21385 0.98763 0.96540 0.97224 1.21623 0.97242 0.93346 1.01661 1.21521 0.94138 0.88515 0.96858 1.62459 1.16192 1.01974 1.43764 1.22837 0.95484 1.06192 0.84166 1.23323 0.83693 0.94104 1.04355 1.47629 1.22262 1.32336 1.05576 1.78064 1.03603 1.15557 1.12753 1.75254 1.14782 1.12153 1.15562 1.23669 1.00381 1.05224 0.91343 1.23452 0.98687 1.00666 0.95480 1.21438 0.97092 0.95877 0.86331 1.21535 0.97909 0.96708 0.97506 1.21481 0.97963 0.95047 0.99505 0.93085 0.98173 0.91948 0.96708 0.91528 0.91879 0.96308 0.86993 0.85742 0.85142 0.89027 0.76285 0.86404 0.84917 0.90704 0.91203 0.94847 0.93292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.59 11.32 21.45 0.24 -51.35 16 2 C 0.02 0.90 5.30 84.65 0.45 1.34 16 3 Si 0.94 43.60 29.54 68.60 2.03 45.63 16 4 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 5 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 6 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 7 C -0.54 -29.45 8.56 25.60 0.22 -29.24 16 8 H 0.04 2.44 7.74 -2.91 -0.02 2.42 16 9 C 0.05 2.20 2.10 -11.54 -0.02 2.18 16 10 C -0.10 -4.49 4.98 30.60 0.15 -4.33 16 11 C -0.10 -3.30 4.53 30.59 0.14 -3.16 16 12 C 0.10 2.73 1.24 44.91 0.06 2.79 16 13 N -0.52 -10.57 4.84 -873.42 -4.23 -14.79 16 14 C 0.04 0.68 5.30 86.41 0.46 1.14 16 15 C 0.07 1.32 6.38 86.46 0.55 1.87 16 16 N -0.28 -7.23 3.54 -333.90 -1.18 -8.41 16 17 N -0.12 -3.86 13.26 37.02 0.49 -3.37 16 18 N -0.31 -9.83 12.43 -58.69 -0.73 -10.56 16 19 C -0.05 -1.15 12.03 83.44 1.00 -0.15 16 20 C -0.05 -1.09 5.98 40.99 0.25 -0.84 16 21 C 0.12 2.03 6.05 85.41 0.52 2.54 16 22 C -0.10 -2.96 5.11 30.59 0.16 -2.81 16 23 C -0.10 -4.02 5.14 30.60 0.16 -3.86 16 24 H 0.26 13.99 8.31 -92.71 -0.77 13.22 16 25 H 0.00 0.01 8.14 -2.39 -0.02 -0.01 16 26 H 0.06 3.20 6.07 -2.39 -0.01 3.19 16 27 H 0.01 0.66 8.14 -2.39 -0.02 0.64 16 28 H 0.07 1.83 5.58 -2.39 -0.01 1.82 16 29 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 30 H 0.02 0.61 6.16 -2.39 -0.01 0.60 16 31 H 0.11 1.31 8.07 -2.39 -0.02 1.29 16 32 H 0.12 1.81 6.64 -2.39 -0.02 1.80 16 33 H 0.13 1.95 8.14 -2.39 -0.02 1.93 16 34 H 0.09 2.13 6.18 -2.39 -0.01 2.12 16 35 H 0.22 3.39 8.06 -2.91 -0.02 3.37 16 36 H 0.12 1.82 5.85 -2.38 -0.01 1.81 16 37 H 0.13 1.46 8.14 -2.39 -0.02 1.44 16 38 H 0.07 1.84 6.21 -2.39 -0.01 1.83 16 39 H 0.07 2.10 8.14 -2.39 -0.02 2.09 16 40 H 0.03 1.36 8.14 -2.39 -0.02 1.35 16 41 H 0.05 1.91 8.14 -2.38 -0.02 1.89 16 Total: -1.00 -67.77 308.98 1.73 -66.04 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: 1.03 Total: 9.34 kcal Atomic # 6 Polarization: -36.61 SS G_CDS: 4.08 Total: -32.53 kcal Atomic # 7 Polarization: -83.07 SS G_CDS: -5.41 Total: -88.48 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.63 kcal Total: -67.77 1.73 -66.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173337297.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.849 kcal (2) G-P(sol) polarization free energy of solvation -67.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.041 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds