Wall clock time and date at job start Mon Mar 30 2020 02:05:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50704 * 109.47222 * 2 1 4 4 N 1.30495 * 125.64819 * 305.02416 * 3 2 1 5 5 C 1.34122 * 109.25694 * 179.97438 * 4 3 2 6 6 C 1.50697 * 125.99258 * 179.97438 * 5 4 3 7 7 C 1.34670 * 108.02161 * 359.97438 * 5 4 3 8 8 C 1.50698 * 126.59484 * 180.25765 * 7 5 4 9 9 N 1.46901 * 109.47405 * 285.95239 * 8 7 5 10 10 C 1.46903 * 110.99577 * 169.81977 * 9 8 7 11 11 C 1.50703 * 109.46897 * 191.79980 * 10 9 8 12 12 H 1.08004 * 119.99843 * 4.84121 * 11 10 9 13 13 C 1.37868 * 120.00430 * 184.83937 * 11 10 9 14 14 N 1.31519 * 120.00068 * 0.02562 * 13 11 10 15 15 Si 1.86802 * 120.00517 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.46716 * 59.99897 * 15 13 11 17 17 H 1.48495 * 109.47221 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.46860 * 300.00299 * 15 13 11 19 19 C 1.46896 * 110.99939 * 293.77496 * 9 8 7 20 20 C 1.53001 * 109.47046 * 301.20903 * 19 9 8 21 21 C 1.47201 * 109.47101 * 185.32240 * 20 19 9 22 22 N 6.79835 * 163.50348 * 63.75707 * 2 1 3 23 23 N 1.35044 * 125.64949 * 124.99328 * 3 2 1 24 24 H 0.96999 * 126.39983 * 0.03344 * 23 3 2 25 25 H 1.09004 * 109.47094 * 60.00131 * 1 2 3 26 26 H 1.09000 * 109.47207 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47530 * 299.99918 * 1 2 3 28 28 H 1.08995 * 109.47482 * 239.99770 * 2 1 3 29 29 H 1.09004 * 109.47094 * 119.99869 * 2 1 3 30 30 H 1.09000 * 109.47314 * 274.70033 * 6 5 4 31 31 H 1.09004 * 109.47220 * 34.69864 * 6 5 4 32 32 H 1.09006 * 109.47359 * 154.70095 * 6 5 4 33 33 H 1.09007 * 109.46895 * 45.95359 * 8 7 5 34 34 H 1.09001 * 109.47239 * 165.94442 * 8 7 5 35 35 H 1.08992 * 109.47573 * 311.79879 * 10 9 8 36 36 H 1.08999 * 109.47222 * 71.80560 * 10 9 8 37 37 H 0.96995 * 120.00715 * 179.97438 * 14 13 11 38 38 H 1.09000 * 109.46971 * 61.21130 * 19 9 8 39 39 H 1.08999 * 109.47206 * 181.21060 * 19 9 8 40 40 H 1.08997 * 109.47665 * 305.32567 * 20 19 9 41 41 H 1.09006 * 109.47293 * 65.32495 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 1.7121 2.3408 -0.8684 5 6 2.3454 3.4816 -0.5581 6 6 2.2458 4.7829 -1.3116 7 6 3.0858 3.2604 0.5448 8 6 3.9599 4.2613 1.2557 9 7 5.1778 4.4944 0.4681 10 6 5.9381 5.6336 0.9993 11 6 7.0097 6.0252 0.0146 12 1 7.0660 5.5344 -0.9458 13 6 7.9181 7.0100 0.3398 14 7 7.8499 7.6074 1.5095 15 14 9.2460 7.4960 -0.8809 16 1 8.6130 7.9901 -2.1301 17 1 10.0888 8.5688 -0.2946 18 1 10.0919 6.3149 -1.1884 19 6 6.0098 3.2849 0.4149 20 6 6.3883 2.8634 1.8361 21 6 7.3248 1.7292 1.7785 22 7 8.0485 0.8536 1.7315 23 7 2.8880 1.9531 0.8990 24 1 3.2876 1.4947 1.6547 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 2.9599 4.7815 -2.1351 31 1 1.2363 4.8980 -1.7062 32 1 2.4694 5.6106 -0.6384 33 1 3.4173 5.1995 1.3721 34 1 4.2308 3.8741 2.2379 35 1 5.2658 6.4765 1.1589 36 1 6.3997 5.3527 1.9459 37 1 8.4892 8.3000 1.7385 38 1 5.4523 2.4813 -0.0662 39 1 6.9151 3.4915 -0.1561 40 1 6.8622 3.7001 2.3493 41 1 5.4906 2.5661 2.3782 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001203247356.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:30 Heat of formation + Delta-G solvation = 72.347964 kcal Electronic energy + Delta-G solvation = -21419.500131 eV Core-core repulsion = 18335.030446 eV Total energy + Delta-G solvation = -3084.469685 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.97923 -37.90360 -36.04152 -34.05759 -32.90217 -32.62182 -31.13962 -29.96688 -27.98227 -26.26458 -25.18111 -23.79176 -22.71156 -20.60027 -20.35265 -19.08936 -17.67272 -16.96115 -16.28142 -15.73952 -15.11763 -14.82030 -14.51961 -14.30627 -14.19525 -13.64151 -13.59526 -13.20637 -12.62769 -12.60339 -12.31050 -12.21279 -12.15195 -12.04191 -11.86499 -11.62274 -11.56321 -11.38808 -11.23678 -11.16031 -10.82321 -10.66871 -10.37649 -9.98288 -9.72484 -9.57882 -9.36777 -8.52189 -7.84520 -7.47067 -6.12267 -4.13880 2.20957 2.96328 2.99147 3.19079 3.30080 3.32235 3.34617 3.38168 4.19709 4.37126 4.43208 4.83057 4.89248 5.10389 5.16693 5.18245 5.24014 5.27907 5.33982 5.50040 5.60198 5.64069 5.66008 5.75246 5.85655 5.94008 6.09293 6.13430 6.23594 6.38681 6.42391 6.46383 6.55384 7.06138 7.08572 7.13122 7.54648 7.67697 7.75089 7.88830 7.99822 8.32916 8.36980 8.93828 9.51640 10.97858 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.018615 B = 0.004872 C = 0.004176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1503.790165 B = 5745.520967 C = 6703.638419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.033 4.033 3 C 0.199 3.801 4 N -0.487 5.487 5 C 0.024 3.976 6 C -0.059 4.059 7 C -0.009 4.009 8 C 0.123 3.877 9 N -0.516 5.516 10 C 0.187 3.813 11 C -0.510 4.510 12 H 0.064 0.936 13 C 0.059 3.941 14 N -0.898 5.898 15 Si 0.895 3.105 16 H -0.275 1.275 17 H -0.288 1.288 18 H -0.278 1.278 19 C 0.073 3.927 20 C -0.072 4.072 21 C 0.221 3.779 22 N -0.456 5.456 23 N -0.567 5.567 24 H 0.411 0.589 25 H 0.068 0.932 26 H 0.058 0.942 27 H 0.052 0.948 28 H 0.086 0.914 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.056 0.944 32 H 0.071 0.929 33 H 0.095 0.905 34 H 0.034 0.966 35 H 0.033 0.967 36 H 0.004 0.996 37 H 0.263 0.737 38 H 0.061 0.939 39 H 0.094 0.906 40 H 0.123 0.877 41 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.346 -10.296 1.405 16.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.073 4.073 3 C -0.064 4.064 4 N -0.208 5.208 5 C -0.105 4.105 6 C -0.117 4.117 7 C -0.124 4.124 8 C -0.007 4.007 9 N -0.239 5.239 10 C 0.063 3.937 11 C -0.548 4.548 12 H 0.083 0.917 13 C -0.142 4.142 14 N -0.537 5.537 15 Si 0.723 3.277 16 H -0.200 1.200 17 H -0.214 1.214 18 H -0.203 1.203 19 C -0.057 4.057 20 C -0.114 4.114 21 C -0.096 4.096 22 N -0.134 5.134 23 N -0.171 5.171 24 H 0.248 0.752 25 H 0.087 0.913 26 H 0.077 0.923 27 H 0.072 0.928 28 H 0.104 0.896 29 H 0.091 0.909 30 H 0.089 0.911 31 H 0.075 0.925 32 H 0.090 0.910 33 H 0.113 0.887 34 H 0.052 0.948 35 H 0.051 0.949 36 H 0.022 0.978 37 H 0.072 0.928 38 H 0.079 0.921 39 H 0.112 0.888 40 H 0.141 0.859 41 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -11.864 -11.364 0.258 16.431 hybrid contribution 1.602 0.352 1.427 2.174 sum -10.263 -11.012 1.685 15.147 Atomic orbital electron populations 1.21660 0.93704 1.01555 1.03010 1.19871 0.96902 0.87482 1.03015 1.23005 0.96175 0.97302 0.89947 1.70050 1.25468 0.99682 1.25580 1.20452 0.98810 0.95315 0.95914 1.19960 1.01305 0.91014 0.99433 1.21042 1.05159 0.85019 1.01132 1.20503 0.91386 0.95920 0.92855 1.62380 1.04868 1.04774 1.51845 1.19881 0.92543 0.86772 0.94524 1.21067 1.12043 1.19838 1.01872 0.91742 1.24934 0.97762 0.96202 0.95339 1.69919 1.37124 1.25771 1.20859 0.86605 0.81554 0.78165 0.81415 1.20035 1.21397 1.20325 1.22045 0.99033 0.92720 0.91909 1.20232 0.95091 0.92012 1.04105 1.29256 0.93810 0.93917 0.92637 1.81191 1.10527 1.12208 1.09439 1.43122 1.37853 1.10627 1.25513 0.75167 0.91301 0.92286 0.92846 0.89585 0.90939 0.91096 0.92456 0.91009 0.88728 0.94754 0.94885 0.97847 0.92772 0.92088 0.88757 0.85918 0.89139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.19 9.87 37.16 0.37 -0.82 16 2 C -0.03 -0.30 6.56 -27.88 -0.18 -0.49 16 3 C 0.20 2.55 7.43 -155.42 -1.16 1.39 16 4 N -0.49 -7.63 11.21 -7.07 -0.08 -7.71 16 5 C 0.02 0.38 7.09 -82.86 -0.59 -0.21 16 6 C -0.06 -0.87 10.27 36.00 0.37 -0.50 16 7 C -0.01 -0.13 5.63 -81.60 -0.46 -0.59 16 8 C 0.12 1.77 4.81 -4.98 -0.02 1.75 16 9 N -0.52 -9.07 4.68 -237.51 -1.11 -10.18 16 10 C 0.19 4.07 4.58 -4.97 -0.02 4.05 16 11 C -0.51 -12.80 8.36 -34.44 -0.29 -13.09 16 12 H 0.06 1.64 7.44 -52.48 -0.39 1.25 16 13 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 14 N -0.90 -24.58 13.29 55.43 0.74 -23.85 16 15 Si 0.89 20.65 29.54 -169.99 -5.02 15.63 16 16 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 17 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 18 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 19 C 0.07 1.19 4.95 -3.83 -0.02 1.17 16 20 C -0.07 -1.01 4.99 -29.52 -0.15 -1.16 16 21 C 0.22 3.45 15.43 -20.73 -0.32 3.13 16 22 N -0.46 -8.08 18.54 42.19 0.78 -7.30 16 23 N -0.57 -6.74 6.15 -6.54 -0.04 -6.78 16 24 H 0.41 3.70 8.96 -40.82 -0.37 3.33 16 25 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 31 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.07 1.02 7.44 -51.93 -0.39 0.64 16 33 H 0.09 1.38 7.48 -51.92 -0.39 1.00 16 34 H 0.03 0.44 6.07 -51.93 -0.32 0.12 16 35 H 0.03 0.78 7.89 -51.93 -0.41 0.37 16 36 H 0.00 0.09 6.02 -51.93 -0.31 -0.23 16 37 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 38 H 0.06 0.95 7.33 -51.93 -0.38 0.57 16 39 H 0.09 1.77 6.96 -51.93 -0.36 1.40 16 40 H 0.12 1.90 6.15 -51.93 -0.32 1.58 16 41 H 0.09 0.99 6.55 -51.93 -0.34 0.65 16 LS Contribution 343.75 15.07 5.18 5.18 Total: -1.00 -29.91 343.75 -8.18 -38.09 By element: Atomic # 1 Polarization: 6.87 SS G_CDS: -6.06 Total: 0.81 kcal Atomic # 6 Polarization: -1.33 SS G_CDS: -2.57 Total: -3.89 kcal Atomic # 7 Polarization: -56.10 SS G_CDS: 0.29 Total: -55.81 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -29.91 -8.18 -38.09 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001203247356.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.438 kcal (2) G-P(sol) polarization free energy of solvation -29.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.090 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds