Wall clock time and date at job start Mon Mar 30 2020 02:05:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50704 * 109.47222 * 2 1 4 4 N 1.30495 * 125.64819 * 305.02416 * 3 2 1 5 5 C 1.34122 * 109.25694 * 179.97438 * 4 3 2 6 6 C 1.50697 * 125.99258 * 179.97438 * 5 4 3 7 7 C 1.34670 * 108.02161 * 359.97438 * 5 4 3 8 8 C 1.50698 * 126.59484 * 180.25765 * 7 5 4 9 9 N 1.46901 * 109.47405 * 285.95239 * 8 7 5 10 10 C 1.46903 * 110.99577 * 169.81977 * 9 8 7 11 11 C 1.50703 * 109.46897 * 191.79980 * 10 9 8 12 12 H 1.08004 * 119.99843 * 4.84121 * 11 10 9 13 13 C 1.37868 * 120.00430 * 184.83937 * 11 10 9 14 14 N 1.31519 * 120.00068 * 0.02562 * 13 11 10 15 15 Si 1.86802 * 120.00517 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.46716 * 59.99897 * 15 13 11 17 17 H 1.48495 * 109.47221 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.46860 * 300.00299 * 15 13 11 19 19 C 1.46896 * 110.99939 * 293.77496 * 9 8 7 20 20 C 1.53001 * 109.47046 * 301.20903 * 19 9 8 21 21 C 1.47201 * 109.47101 * 185.32240 * 20 19 9 22 22 N 6.79835 * 163.50348 * 63.75707 * 2 1 3 23 23 N 1.35044 * 125.64949 * 124.99328 * 3 2 1 24 24 H 0.96999 * 126.39983 * 0.03344 * 23 3 2 25 25 H 1.09004 * 109.47094 * 60.00131 * 1 2 3 26 26 H 1.09000 * 109.47207 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47530 * 299.99918 * 1 2 3 28 28 H 1.08995 * 109.47482 * 239.99770 * 2 1 3 29 29 H 1.09004 * 109.47094 * 119.99869 * 2 1 3 30 30 H 1.09000 * 109.47314 * 274.70033 * 6 5 4 31 31 H 1.09004 * 109.47220 * 34.69864 * 6 5 4 32 32 H 1.09006 * 109.47359 * 154.70095 * 6 5 4 33 33 H 1.09007 * 109.46895 * 45.95359 * 8 7 5 34 34 H 1.09001 * 109.47239 * 165.94442 * 8 7 5 35 35 H 1.08992 * 109.47573 * 311.79879 * 10 9 8 36 36 H 1.08999 * 109.47222 * 71.80560 * 10 9 8 37 37 H 0.96995 * 120.00715 * 179.97438 * 14 13 11 38 38 H 1.09000 * 109.46971 * 61.21130 * 19 9 8 39 39 H 1.08999 * 109.47206 * 181.21060 * 19 9 8 40 40 H 1.08997 * 109.47665 * 305.32567 * 20 19 9 41 41 H 1.09006 * 109.47293 * 65.32495 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 1.7121 2.3408 -0.8684 5 6 2.3454 3.4816 -0.5581 6 6 2.2458 4.7829 -1.3116 7 6 3.0858 3.2604 0.5448 8 6 3.9599 4.2613 1.2557 9 7 5.1778 4.4944 0.4681 10 6 5.9381 5.6336 0.9993 11 6 7.0097 6.0252 0.0146 12 1 7.0660 5.5344 -0.9458 13 6 7.9181 7.0100 0.3398 14 7 7.8499 7.6074 1.5095 15 14 9.2460 7.4960 -0.8809 16 1 8.6130 7.9901 -2.1301 17 1 10.0888 8.5688 -0.2946 18 1 10.0919 6.3149 -1.1884 19 6 6.0098 3.2849 0.4149 20 6 6.3883 2.8634 1.8361 21 6 7.3248 1.7292 1.7785 22 7 8.0485 0.8536 1.7315 23 7 2.8880 1.9531 0.8990 24 1 3.2876 1.4947 1.6547 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 2.9599 4.7815 -2.1351 31 1 1.2363 4.8980 -1.7062 32 1 2.4694 5.6106 -0.6384 33 1 3.4173 5.1995 1.3721 34 1 4.2308 3.8741 2.2379 35 1 5.2658 6.4765 1.1589 36 1 6.3997 5.3527 1.9459 37 1 8.4892 8.3000 1.7385 38 1 5.4523 2.4813 -0.0662 39 1 6.9151 3.4915 -0.1561 40 1 6.8622 3.7001 2.3493 41 1 5.4906 2.5661 2.3782 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001203247356.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:28 Heat of formation + Delta-G solvation = 53.736992 kcal Electronic energy + Delta-G solvation = -21420.307163 eV Core-core repulsion = 18335.030446 eV Total energy + Delta-G solvation = -3085.276718 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 1.60 seconds Orbital eigenvalues (eV) -43.02975 -39.27407 -37.38447 -35.00535 -34.59939 -33.79641 -32.28743 -31.29125 -29.42328 -27.66390 -26.27412 -25.24226 -23.87077 -21.81323 -21.55192 -20.20468 -18.97843 -18.22200 -17.90584 -17.07505 -16.50260 -16.09922 -15.88690 -15.32606 -15.31519 -14.95249 -14.78335 -14.47080 -14.00737 -13.70011 -13.65311 -13.58216 -13.38407 -13.10247 -13.01903 -12.93492 -12.85987 -12.67917 -12.55844 -12.40388 -12.32043 -11.97632 -11.91416 -11.56980 -11.29076 -10.78498 -10.64722 -10.50584 -8.99881 -8.85245 -8.11955 -6.17784 1.14939 1.45488 1.46799 1.53332 1.69698 1.73137 2.18805 2.26780 2.46436 2.94869 3.22548 3.50957 3.57231 4.01436 4.03202 4.12155 4.17895 4.33164 4.39281 4.44259 4.47305 4.64068 4.72251 4.80292 4.85536 5.04656 5.05736 5.10173 5.11761 5.25834 5.33200 5.35139 5.41360 5.45655 5.46814 5.75291 5.97389 6.16018 6.33491 6.53555 6.63067 6.70003 6.97843 7.28722 7.50908 8.96828 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.018615 B = 0.004872 C = 0.004176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1503.790165 B = 5745.520967 C = 6703.638419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.034 4.034 3 C 0.208 3.792 4 N -0.522 5.522 5 C -0.002 4.002 6 C -0.055 4.055 7 C -0.010 4.010 8 C 0.127 3.873 9 N -0.524 5.524 10 C 0.202 3.798 11 C -0.514 4.514 12 H 0.056 0.944 13 C 0.014 3.986 14 N -0.927 5.927 15 Si 0.946 3.054 16 H -0.273 1.273 17 H -0.287 1.287 18 H -0.276 1.276 19 C 0.080 3.920 20 C -0.060 4.060 21 C 0.242 3.758 22 N -0.491 5.491 23 N -0.555 5.555 24 H 0.428 0.572 25 H 0.048 0.952 26 H 0.082 0.918 27 H 0.049 0.951 28 H 0.091 0.909 29 H 0.102 0.898 30 H 0.057 0.943 31 H 0.063 0.937 32 H 0.070 0.930 33 H 0.091 0.909 34 H 0.061 0.939 35 H 0.014 0.986 36 H -0.001 1.001 37 H 0.262 0.738 38 H 0.071 0.929 39 H 0.065 0.935 40 H 0.112 0.888 41 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.018 -11.966 2.077 17.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.073 4.073 3 C -0.057 4.057 4 N -0.244 5.244 5 C -0.130 4.130 6 C -0.113 4.113 7 C -0.126 4.126 8 C -0.002 4.002 9 N -0.247 5.247 10 C 0.076 3.924 11 C -0.553 4.553 12 H 0.074 0.926 13 C -0.185 4.185 14 N -0.567 5.567 15 Si 0.772 3.228 16 H -0.198 1.198 17 H -0.213 1.213 18 H -0.202 1.202 19 C -0.050 4.050 20 C -0.101 4.101 21 C -0.075 4.075 22 N -0.170 5.170 23 N -0.161 5.161 24 H 0.268 0.732 25 H 0.067 0.933 26 H 0.101 0.899 27 H 0.069 0.931 28 H 0.109 0.891 29 H 0.120 0.880 30 H 0.076 0.924 31 H 0.082 0.918 32 H 0.089 0.911 33 H 0.109 0.891 34 H 0.079 0.921 35 H 0.032 0.968 36 H 0.017 0.983 37 H 0.071 0.929 38 H 0.090 0.910 39 H 0.083 0.917 40 H 0.130 0.870 41 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -12.537 -13.054 0.936 18.123 hybrid contribution 1.722 0.809 1.182 2.240 sum -10.814 -12.245 2.118 16.474 Atomic orbital electron populations 1.21619 0.93288 1.02750 1.01843 1.20091 0.97176 0.85350 1.04709 1.23713 0.94969 0.98182 0.88825 1.70040 1.26775 1.00322 1.27256 1.20672 0.99790 0.95718 0.96846 1.19890 1.01289 0.91142 0.98966 1.20809 1.04994 0.85897 1.00886 1.20453 0.89833 0.96317 0.93548 1.62186 1.05478 1.04277 1.52746 1.19520 0.91603 0.87718 0.93515 1.21399 1.12603 1.19204 1.02082 0.92551 1.25568 0.99677 0.96564 0.96642 1.70004 1.38010 1.26505 1.22213 0.85793 0.79497 0.77745 0.79715 1.19776 1.21294 1.20201 1.21881 0.97793 0.92324 0.93041 1.20173 0.96172 0.91012 1.02780 1.29398 0.93144 0.93449 0.91543 1.81217 1.11595 1.13592 1.10548 1.43037 1.37489 1.09722 1.25832 0.73219 0.93327 0.89913 0.93145 0.89100 0.87955 0.92423 0.91821 0.91135 0.89074 0.92122 0.96802 0.98334 0.92931 0.91026 0.91662 0.87040 0.85182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.98 9.87 71.98 0.71 -1.27 16 2 C -0.03 -0.52 6.56 29.85 0.20 -0.32 16 3 C 0.21 4.81 7.43 138.13 1.03 5.84 16 4 N -0.52 -15.80 11.21 -176.29 -1.98 -17.78 16 5 C 0.00 -0.05 7.09 41.39 0.29 0.24 16 6 C -0.05 -1.62 10.27 71.24 0.73 -0.89 16 7 C -0.01 -0.28 5.63 40.95 0.23 -0.05 16 8 C 0.13 3.45 4.81 85.56 0.41 3.86 16 9 N -0.52 -17.99 4.68 -905.36 -4.24 -22.22 16 10 C 0.20 8.77 4.58 85.56 0.39 9.16 16 11 C -0.51 -25.97 8.36 25.60 0.21 -25.76 16 12 H 0.06 2.89 7.44 -2.91 -0.02 2.87 16 13 C 0.01 0.74 5.46 84.65 0.46 1.20 16 14 N -0.93 -51.04 13.29 21.44 0.28 -50.75 16 15 Si 0.95 42.46 29.54 68.60 2.03 44.48 16 16 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 17 H -0.29 -12.77 7.11 99.48 0.71 -12.06 16 18 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 19 C 0.08 2.49 4.95 86.30 0.43 2.92 16 20 C -0.06 -1.52 4.99 28.79 0.14 -1.38 16 21 C 0.24 7.07 15.43 89.43 1.38 8.45 16 22 N -0.49 -16.71 18.54 20.02 0.37 -16.34 16 23 N -0.56 -11.54 6.15 -174.60 -1.07 -12.62 16 24 H 0.43 5.92 8.96 -92.71 -0.83 5.09 16 25 H 0.05 0.90 8.14 -2.38 -0.02 0.88 16 26 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 27 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 28 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.10 0.95 8.14 -2.38 -0.02 0.93 16 30 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 31 H 0.06 1.73 8.14 -2.38 -0.02 1.71 16 32 H 0.07 2.04 7.44 -2.38 -0.02 2.02 16 33 H 0.09 2.57 7.48 -2.38 -0.02 2.55 16 34 H 0.06 1.33 6.07 -2.39 -0.01 1.32 16 35 H 0.01 0.66 7.89 -2.39 -0.02 0.64 16 36 H 0.00 -0.04 6.02 -2.39 -0.01 -0.06 16 37 H 0.26 13.90 8.31 -92.71 -0.77 13.13 16 38 H 0.07 2.10 7.33 -2.39 -0.02 2.08 16 39 H 0.06 2.42 6.96 -2.39 -0.02 2.41 16 40 H 0.11 3.26 6.15 -2.39 -0.01 3.25 16 41 H 0.13 2.30 6.55 -2.38 -0.02 2.29 16 Total: -1.00 -64.65 343.75 2.23 -62.42 By element: Atomic # 1 Polarization: 10.58 SS G_CDS: 0.21 Total: 10.79 kcal Atomic # 6 Polarization: -4.60 SS G_CDS: 6.62 Total: 2.02 kcal Atomic # 7 Polarization: -113.08 SS G_CDS: -6.63 Total: -119.71 kcal Atomic # 14 Polarization: 42.46 SS G_CDS: 2.03 Total: 44.48 kcal Total: -64.65 2.23 -62.42 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001203247356.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.158 kcal (2) G-P(sol) polarization free energy of solvation -64.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.421 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.60 seconds