Wall clock time and date at job start Mon Mar 30 2020 01:41:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 120.00255 * 2 1 4 4 H 1.48503 * 109.46706 * 270.00257 * 3 2 1 5 5 H 1.48496 * 109.46947 * 30.00075 * 3 2 1 6 6 H 1.48496 * 109.47168 * 150.00384 * 3 2 1 7 7 C 1.37875 * 119.99998 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00212 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00190 * 0.02562 * 7 2 1 10 10 N 1.46900 * 109.47533 * 179.97438 * 9 7 2 11 11 C 1.46957 * 111.00132 * 169.99517 * 10 9 7 12 12 C 1.53051 * 109.36488 * 183.18657 * 11 10 9 13 13 N 1.46958 * 109.36358 * 301.60383 * 12 11 10 14 14 C 1.46900 * 110.99692 * 183.18831 * 13 12 11 15 15 C 1.50702 * 109.47005 * 169.99712 * 14 13 12 16 16 C 1.34663 * 120.73322 * 259.99660 * 15 14 13 17 17 N 1.35905 * 121.27251 * 179.97438 * 16 15 14 18 18 H 0.97003 * 118.59111 * 179.97438 * 17 16 15 19 19 C 1.35901 * 122.80010 * 359.97438 * 17 16 15 20 20 C 1.34654 * 121.27887 * 0.03809 * 19 17 16 21 21 C 1.46862 * 120.72931 * 79.99712 * 15 14 13 22 22 N 1.32192 * 121.21388 * 0.04187 * 21 15 14 23 23 C 1.46955 * 110.88096 * 59.31836 * 13 12 11 24 24 C 1.46958 * 110.99692 * 293.79905 * 10 9 7 25 25 H 0.96997 * 119.99585 * 359.97438 * 1 2 3 26 26 H 1.09003 * 109.47371 * 59.99053 * 9 7 2 27 27 H 1.09000 * 109.46626 * 299.99573 * 9 7 2 28 28 H 1.09002 * 109.48728 * 63.22129 * 11 10 9 29 29 H 1.08998 * 109.48754 * 303.15832 * 11 10 9 30 30 H 1.08994 * 109.48957 * 181.63243 * 12 11 10 31 31 H 1.09001 * 109.48585 * 61.57024 * 12 11 10 32 32 H 1.09004 * 109.47034 * 49.99646 * 14 13 12 33 33 H 1.09003 * 109.47039 * 289.99999 * 14 13 12 34 34 H 1.07996 * 119.36108 * 0.25904 * 16 15 14 35 35 H 1.08008 * 119.35622 * 180.02562 * 19 17 16 36 36 H 1.08005 * 120.73331 * 179.97438 * 20 19 17 37 37 H 0.97003 * 119.99913 * 179.97438 * 22 21 15 38 38 H 1.09002 * 109.48951 * 60.64754 * 23 13 12 39 39 H 1.08998 * 109.48375 * 180.70956 * 23 13 12 40 40 H 1.08997 * 109.48569 * 296.77579 * 24 10 9 41 41 H 1.08994 * 109.49249 * 56.84208 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4401 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0017 10 7 2.2056 -3.6158 -0.0027 11 6 1.5209 -4.8942 0.2345 12 6 2.5564 -6.0191 0.3051 13 7 3.3194 -6.0585 -0.9503 14 6 4.2739 -7.1751 -0.9513 15 6 4.8579 -7.3355 -2.3313 16 6 4.3941 -8.2823 -3.1690 17 7 4.9123 -8.4363 -4.4159 18 1 4.5491 -9.1312 -4.9870 19 6 5.9174 -7.6582 -4.8967 20 6 6.4616 -6.6787 -4.1500 21 6 5.9453 -6.4625 -2.7921 22 7 6.4411 -5.5164 -2.0133 23 6 4.0041 -4.7800 -1.1874 24 6 2.9686 -3.6551 -1.2581 25 1 -0.4849 0.8401 0.0004 26 1 0.6246 -2.5563 -0.8919 27 1 0.6242 -2.5575 0.8881 28 1 0.8253 -5.0910 -0.5813 29 1 0.9733 -4.8443 1.1757 30 1 2.0485 -6.9722 0.4521 31 1 3.2355 -5.8364 1.1379 32 1 3.7599 -8.0928 -0.6653 33 1 5.0738 -6.9699 -0.2398 34 1 3.5919 -8.9288 -2.8453 35 1 6.2871 -7.8290 -5.8971 36 1 7.2604 -6.0658 -4.5408 37 1 7.1596 -4.9500 -2.3356 38 1 4.6997 -4.5832 -0.3716 39 1 4.5516 -4.8299 -2.1285 40 1 2.2894 -3.8378 -2.0908 41 1 3.4765 -2.7020 -1.4050 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001209733639.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:38 Heat of formation + Delta-G solvation = 76.336016 kcal Electronic energy + Delta-G solvation = -21503.391169 eV Core-core repulsion = 18419.094419 eV Total energy + Delta-G solvation = -3084.296750 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.16814 -38.38221 -35.55654 -34.36001 -32.64469 -31.71058 -30.12975 -29.84175 -27.94310 -25.80054 -23.81561 -23.03281 -22.40077 -21.66547 -21.01335 -18.88141 -18.55181 -17.09978 -16.23057 -16.08645 -15.65274 -14.65277 -14.49483 -14.29875 -14.13963 -14.02654 -13.88225 -13.46415 -13.22714 -13.02553 -12.47485 -12.10307 -11.81324 -11.52551 -11.40301 -11.08533 -10.94659 -10.69391 -10.51488 -10.40314 -10.10400 -10.02715 -9.63454 -9.48333 -9.04658 -9.00087 -8.33094 -7.78617 -7.25288 -7.01672 -5.92224 -3.92522 1.41261 1.50182 2.92159 3.39086 3.44465 3.50479 3.63242 4.37103 4.52241 4.54006 4.57916 4.89110 5.11633 5.19447 5.28463 5.43417 5.50844 5.64240 5.68167 5.80559 5.89170 5.99125 6.04551 6.20464 6.29346 6.30650 6.43847 6.56300 6.60162 6.68301 6.93584 6.96026 6.99113 7.13795 7.41647 7.50378 7.59198 7.68348 7.94058 8.24618 8.39830 8.45451 8.72202 9.15932 9.71186 11.18840 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.024171 B = 0.004101 C = 0.003752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.151610 B = 6826.719909 C = 7460.922072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.054 3.946 3 Si 0.896 3.104 4 H -0.282 1.282 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.502 4.502 8 H 0.062 0.938 9 C 0.193 3.807 10 N -0.538 5.538 11 C 0.059 3.941 12 C 0.060 3.940 13 N -0.535 5.535 14 C 0.121 3.879 15 C -0.143 4.143 16 C 0.114 3.886 17 N -0.616 5.616 18 H 0.412 0.588 19 C 0.123 3.877 20 C -0.271 4.271 21 C 0.255 3.745 22 N -0.721 5.721 23 C 0.068 3.932 24 C 0.066 3.934 25 H 0.260 0.740 26 H -0.011 1.011 27 H 0.028 0.972 28 H 0.027 0.973 29 H 0.068 0.932 30 H 0.065 0.935 31 H 0.037 0.963 32 H 0.069 0.931 33 H 0.048 0.952 34 H 0.159 0.841 35 H 0.152 0.848 36 H 0.134 0.866 37 H 0.326 0.674 38 H 0.043 0.957 39 H 0.084 0.916 40 H 0.020 0.980 41 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.895 -21.256 -10.210 25.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.147 4.147 3 Si 0.724 3.276 4 H -0.208 1.208 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.541 4.541 8 H 0.081 0.919 9 C 0.068 3.932 10 N -0.263 5.263 11 C -0.070 4.070 12 C -0.068 4.068 13 N -0.261 5.261 14 C -0.007 4.007 15 C -0.152 4.152 16 C -0.013 4.013 17 N -0.223 5.223 18 H 0.245 0.755 19 C -0.004 4.004 20 C -0.300 4.300 21 C 0.072 3.928 22 N -0.338 5.338 23 C -0.060 4.060 24 C -0.063 4.063 25 H 0.069 0.931 26 H 0.007 0.993 27 H 0.046 0.954 28 H 0.045 0.955 29 H 0.087 0.913 30 H 0.084 0.916 31 H 0.055 0.945 32 H 0.088 0.912 33 H 0.066 0.934 34 H 0.176 0.824 35 H 0.169 0.831 36 H 0.152 0.848 37 H 0.139 0.861 38 H 0.061 0.939 39 H 0.102 0.898 40 H 0.038 0.962 41 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 9.565 -20.704 -9.117 24.561 hybrid contribution 0.769 0.877 -1.293 1.742 sum 10.334 -19.826 -10.410 24.663 Atomic orbital electron populations 1.69969 1.06037 1.26571 1.51518 1.24982 0.94841 0.99219 0.95629 0.86520 0.79873 0.83214 0.77968 1.20819 1.21315 1.19763 1.21196 0.93514 0.90027 1.49382 0.91935 1.19691 0.90125 0.87531 0.95876 1.62262 1.27841 1.02544 1.33653 1.22028 0.94727 0.90248 1.00037 1.22135 0.96085 0.98047 0.90556 1.62347 1.25683 1.04023 1.34005 1.20483 0.94042 0.94422 0.91757 1.20087 0.99325 0.97989 0.97828 1.21208 0.96971 0.99098 0.84034 1.40821 1.33528 1.33658 1.14332 0.75451 1.21349 0.88963 0.91834 0.98286 1.22795 1.06540 1.03558 0.97114 1.21133 0.91787 0.91443 0.88449 1.70602 1.17453 1.08796 1.36924 1.22465 0.94617 0.86918 1.01996 1.22076 0.95528 0.98122 0.90577 0.93072 0.99297 0.95370 0.95499 0.91342 0.91645 0.94489 0.91247 0.93356 0.82419 0.83073 0.84832 0.86129 0.93893 0.89818 0.96202 0.90220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.86 13.29 55.43 0.74 -27.12 16 2 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.90 22.62 29.54 -169.99 -5.02 17.60 16 4 H -0.28 -7.00 7.11 56.52 0.40 -6.59 16 5 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 6 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 7 C -0.50 -14.98 8.47 -34.44 -0.29 -15.27 16 8 H 0.06 1.86 7.13 -52.49 -0.37 1.49 16 9 C 0.19 5.41 4.72 -4.97 -0.02 5.38 16 10 N -0.54 -12.90 4.70 -235.91 -1.11 -14.01 16 11 C 0.06 1.18 5.61 -3.77 -0.02 1.16 16 12 C 0.06 1.01 5.61 -3.77 -0.02 0.99 16 13 N -0.54 -8.97 4.70 -235.91 -1.11 -10.08 16 14 C 0.12 1.65 5.04 -4.97 -0.03 1.63 16 15 C -0.14 -1.76 5.27 -102.40 -0.54 -2.30 16 16 C 0.11 0.94 10.77 -17.01 -0.18 0.75 16 17 N -0.62 -3.55 5.22 -13.14 -0.07 -3.62 16 18 H 0.41 0.82 8.88 -40.82 -0.36 0.46 16 19 C 0.12 0.82 11.13 -17.02 -0.19 0.63 16 20 C -0.27 -2.71 10.20 -37.36 -0.38 -3.09 16 21 C 0.26 3.43 5.94 -80.73 -0.48 2.95 16 22 N -0.72 -11.18 10.73 34.43 0.37 -10.81 16 23 C 0.07 1.31 4.22 -3.77 -0.02 1.30 16 24 C 0.07 1.49 5.43 -3.77 -0.02 1.47 16 25 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 26 H -0.01 -0.32 8.12 -51.93 -0.42 -0.74 16 27 H 0.03 0.83 8.03 -51.93 -0.42 0.41 16 28 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.07 1.33 8.07 -51.93 -0.42 0.91 16 30 H 0.07 0.90 8.07 -51.93 -0.42 0.49 16 31 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.07 0.75 7.88 -51.93 -0.41 0.35 16 33 H 0.05 0.75 7.99 -51.93 -0.42 0.33 16 34 H 0.16 0.86 8.01 -52.49 -0.42 0.44 16 35 H 0.15 0.43 8.06 -52.48 -0.42 0.01 16 36 H 0.13 1.17 8.06 -52.48 -0.42 0.74 16 37 H 0.33 4.64 8.82 -40.82 -0.36 4.28 16 38 H 0.04 0.92 7.99 -51.93 -0.42 0.50 16 39 H 0.08 1.60 4.64 -51.93 -0.24 1.36 16 40 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.08 1.94 6.79 -51.93 -0.35 1.58 16 LS Contribution 326.61 15.07 4.92 4.92 Total: -1.00 -35.68 326.61 -9.84 -45.52 By element: Atomic # 1 Polarization: 6.78 SS G_CDS: -6.27 Total: 0.51 kcal Atomic # 6 Polarization: -0.62 SS G_CDS: -2.29 Total: -2.91 kcal Atomic # 7 Polarization: -64.46 SS G_CDS: -1.18 Total: -65.64 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -5.02 Total: 17.60 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -35.68 -9.84 -45.52 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001209733639.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.856 kcal (2) G-P(sol) polarization free energy of solvation -35.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.520 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds