Wall clock time and date at job start Mon Mar 30 2020 01:41:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 120.00255 * 2 1 4 4 H 1.48503 * 109.46706 * 270.00257 * 3 2 1 5 5 H 1.48496 * 109.46947 * 30.00075 * 3 2 1 6 6 H 1.48496 * 109.47168 * 150.00384 * 3 2 1 7 7 C 1.37875 * 119.99998 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00212 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00190 * 0.02562 * 7 2 1 10 10 N 1.46900 * 109.47533 * 179.97438 * 9 7 2 11 11 C 1.46957 * 111.00132 * 169.99517 * 10 9 7 12 12 C 1.53051 * 109.36488 * 183.18657 * 11 10 9 13 13 N 1.46958 * 109.36358 * 301.60383 * 12 11 10 14 14 C 1.46900 * 110.99692 * 183.18831 * 13 12 11 15 15 C 1.50702 * 109.47005 * 169.99712 * 14 13 12 16 16 C 1.34663 * 120.73322 * 259.99660 * 15 14 13 17 17 N 1.35905 * 121.27251 * 179.97438 * 16 15 14 18 18 H 0.97003 * 118.59111 * 179.97438 * 17 16 15 19 19 C 1.35901 * 122.80010 * 359.97438 * 17 16 15 20 20 C 1.34654 * 121.27887 * 0.03809 * 19 17 16 21 21 C 1.46862 * 120.72931 * 79.99712 * 15 14 13 22 22 N 1.32192 * 121.21388 * 0.04187 * 21 15 14 23 23 C 1.46955 * 110.88096 * 59.31836 * 13 12 11 24 24 C 1.46958 * 110.99692 * 293.79905 * 10 9 7 25 25 H 0.96997 * 119.99585 * 359.97438 * 1 2 3 26 26 H 1.09003 * 109.47371 * 59.99053 * 9 7 2 27 27 H 1.09000 * 109.46626 * 299.99573 * 9 7 2 28 28 H 1.09002 * 109.48728 * 63.22129 * 11 10 9 29 29 H 1.08998 * 109.48754 * 303.15832 * 11 10 9 30 30 H 1.08994 * 109.48957 * 181.63243 * 12 11 10 31 31 H 1.09001 * 109.48585 * 61.57024 * 12 11 10 32 32 H 1.09004 * 109.47034 * 49.99646 * 14 13 12 33 33 H 1.09003 * 109.47039 * 289.99999 * 14 13 12 34 34 H 1.07996 * 119.36108 * 0.25904 * 16 15 14 35 35 H 1.08008 * 119.35622 * 180.02562 * 19 17 16 36 36 H 1.08005 * 120.73331 * 179.97438 * 20 19 17 37 37 H 0.97003 * 119.99913 * 179.97438 * 22 21 15 38 38 H 1.09002 * 109.48951 * 60.64754 * 23 13 12 39 39 H 1.08998 * 109.48375 * 180.70956 * 23 13 12 40 40 H 1.08997 * 109.48569 * 296.77579 * 24 10 9 41 41 H 1.08994 * 109.49249 * 56.84208 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4401 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0017 10 7 2.2056 -3.6158 -0.0027 11 6 1.5209 -4.8942 0.2345 12 6 2.5564 -6.0191 0.3051 13 7 3.3194 -6.0585 -0.9503 14 6 4.2739 -7.1751 -0.9513 15 6 4.8579 -7.3355 -2.3313 16 6 4.3941 -8.2823 -3.1690 17 7 4.9123 -8.4363 -4.4159 18 1 4.5491 -9.1312 -4.9870 19 6 5.9174 -7.6582 -4.8967 20 6 6.4616 -6.6787 -4.1500 21 6 5.9453 -6.4625 -2.7921 22 7 6.4411 -5.5164 -2.0133 23 6 4.0041 -4.7800 -1.1874 24 6 2.9686 -3.6551 -1.2581 25 1 -0.4849 0.8401 0.0004 26 1 0.6246 -2.5563 -0.8919 27 1 0.6242 -2.5575 0.8881 28 1 0.8253 -5.0910 -0.5813 29 1 0.9733 -4.8443 1.1757 30 1 2.0485 -6.9722 0.4521 31 1 3.2355 -5.8364 1.1379 32 1 3.7599 -8.0928 -0.6653 33 1 5.0738 -6.9699 -0.2398 34 1 3.5919 -8.9288 -2.8453 35 1 6.2871 -7.8290 -5.8971 36 1 7.2604 -6.0658 -4.5408 37 1 7.1596 -4.9500 -2.3356 38 1 4.6997 -4.5832 -0.3716 39 1 4.5516 -4.8299 -2.1285 40 1 2.2894 -3.8378 -2.0908 41 1 3.4765 -2.7020 -1.4050 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001209733639.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:38 Heat of formation + Delta-G solvation = 47.418359 kcal Electronic energy + Delta-G solvation = -21504.645133 eV Core-core repulsion = 18419.094419 eV Total energy + Delta-G solvation = -3085.550714 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.95588 -39.87296 -36.96119 -35.50065 -34.59369 -32.88243 -31.70815 -30.76949 -29.67467 -27.42396 -25.27368 -24.50225 -23.42842 -23.21949 -22.27054 -20.52765 -19.20158 -18.50479 -17.89227 -17.22247 -16.92137 -16.43404 -15.80396 -15.73566 -15.57425 -15.24515 -15.10446 -14.87513 -14.53624 -14.24988 -14.01696 -13.48155 -13.39563 -13.03500 -12.86794 -12.70119 -12.57829 -12.32588 -12.18466 -12.15633 -11.89147 -11.73016 -11.20353 -11.16506 -10.63638 -10.31299 -9.94634 -9.18559 -8.98580 -8.22704 -8.09439 -6.33029 0.68586 0.76978 1.37185 1.39424 1.51724 2.37156 2.38584 2.77741 3.08569 3.30652 3.34353 3.72116 3.93546 4.12326 4.17277 4.30706 4.35538 4.39571 4.51472 4.54539 4.61618 4.72959 4.77731 4.86219 4.96509 5.03651 5.04515 5.09633 5.22528 5.23427 5.28560 5.33750 5.48275 5.62437 5.83232 6.03111 6.20762 6.21829 6.24031 6.41716 6.64229 6.66190 6.82390 7.36403 7.56820 8.88643 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.024171 B = 0.004101 C = 0.003752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.151610 B = 6826.719909 C = 7460.922072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.004 3.996 3 Si 0.970 3.030 4 H -0.271 1.271 5 H -0.275 1.275 6 H -0.269 1.269 7 C -0.527 4.527 8 H 0.054 0.946 9 C 0.209 3.791 10 N -0.548 5.548 11 C 0.055 3.945 12 C 0.067 3.933 13 N -0.535 5.535 14 C 0.128 3.872 15 C -0.201 4.201 16 C 0.154 3.846 17 N -0.596 5.596 18 H 0.437 0.563 19 C 0.153 3.847 20 C -0.311 4.311 21 C 0.245 3.755 22 N -0.786 5.786 23 C 0.094 3.906 24 C 0.072 3.928 25 H 0.266 0.734 26 H -0.041 1.041 27 H 0.007 0.993 28 H 0.024 0.976 29 H 0.072 0.928 30 H 0.110 0.890 31 H 0.025 0.975 32 H 0.106 0.894 33 H 0.020 0.980 34 H 0.199 0.801 35 H 0.201 0.799 36 H 0.135 0.865 37 H 0.318 0.682 38 H 0.015 0.985 39 H 0.089 0.911 40 H 0.009 0.991 41 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.926 -24.066 -12.184 28.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.194 4.194 3 Si 0.794 3.206 4 H -0.197 1.197 5 H -0.200 1.200 6 H -0.193 1.193 7 C -0.565 4.565 8 H 0.073 0.927 9 C 0.083 3.917 10 N -0.273 5.273 11 C -0.073 4.073 12 C -0.061 4.061 13 N -0.260 5.260 14 C 0.001 3.999 15 C -0.210 4.210 16 C 0.025 3.975 17 N -0.203 5.203 18 H 0.276 0.724 19 C 0.024 3.976 20 C -0.340 4.340 21 C 0.066 3.934 22 N -0.406 5.406 23 C -0.035 4.035 24 C -0.057 4.057 25 H 0.075 0.925 26 H -0.023 1.023 27 H 0.025 0.975 28 H 0.042 0.958 29 H 0.091 0.909 30 H 0.128 0.872 31 H 0.044 0.956 32 H 0.124 0.876 33 H 0.038 0.962 34 H 0.215 0.785 35 H 0.218 0.782 36 H 0.153 0.847 37 H 0.131 0.869 38 H 0.034 0.966 39 H 0.107 0.893 40 H 0.028 0.972 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 9.587 -23.591 -11.135 27.792 hybrid contribution 0.682 1.521 -0.838 1.865 sum 10.269 -22.070 -11.972 27.127 Atomic orbital electron populations 1.70083 1.07616 1.27973 1.51642 1.25904 0.95814 1.03105 0.94610 0.85379 0.78493 0.78208 0.78520 1.19689 1.20022 1.19326 1.21428 0.93297 0.91391 1.50365 0.92743 1.19352 0.90043 0.88995 0.93302 1.62204 1.27327 1.03446 1.34324 1.22174 0.95732 0.89412 0.99998 1.22127 0.95186 0.98457 0.90323 1.62391 1.26346 1.03535 1.33697 1.20486 0.92773 0.94011 0.92660 1.20061 1.01370 1.01001 0.98606 1.21697 0.95526 0.96673 0.83632 1.41084 1.32202 1.33228 1.13789 0.72369 1.21972 0.87040 0.89253 0.99295 1.22839 1.08484 1.06205 0.96516 1.21677 0.91441 0.90540 0.89703 1.70623 1.19702 1.11626 1.38606 1.22106 0.92683 0.87392 1.01307 1.22005 0.95645 0.98406 0.89613 0.92527 1.02308 0.97518 0.95774 0.90943 0.87226 0.95626 0.87562 0.96160 0.78472 0.78211 0.84682 0.86936 0.96629 0.89346 0.97243 0.93016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.91 13.29 21.45 0.28 -58.63 16 2 C 0.00 0.22 5.46 84.65 0.46 0.69 16 3 Si 0.97 47.21 29.54 68.60 2.03 49.24 16 4 H -0.27 -12.72 7.11 99.48 0.71 -12.01 16 5 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 6 H -0.27 -12.82 7.11 99.48 0.71 -12.12 16 7 C -0.53 -32.73 8.47 25.60 0.22 -32.51 16 8 H 0.05 3.40 7.13 -2.91 -0.02 3.38 16 9 C 0.21 12.37 4.72 85.56 0.40 12.78 16 10 N -0.55 -27.58 4.70 -900.29 -4.23 -31.81 16 11 C 0.06 2.25 5.61 86.31 0.48 2.73 16 12 C 0.07 2.19 5.61 86.31 0.48 2.67 16 13 N -0.53 -17.62 4.70 -900.28 -4.23 -21.86 16 14 C 0.13 3.31 5.04 85.56 0.43 3.74 16 15 C -0.20 -4.56 5.27 -18.42 -0.10 -4.65 16 16 C 0.15 1.80 10.77 83.24 0.90 2.70 16 17 N -0.60 -3.53 5.22 -195.49 -1.02 -4.55 16 18 H 0.44 -1.27 8.88 -92.71 -0.82 -2.09 16 19 C 0.15 1.35 11.13 83.24 0.93 2.27 16 20 C -0.31 -5.84 10.20 23.71 0.24 -5.60 16 21 C 0.25 6.68 5.94 43.61 0.26 6.93 16 22 N -0.79 -26.47 10.73 -44.98 -0.48 -26.95 16 23 C 0.09 3.80 4.22 86.31 0.36 4.17 16 24 C 0.07 3.45 5.43 86.31 0.47 3.92 16 25 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 26 H -0.04 -2.59 8.12 -2.39 -0.02 -2.61 16 27 H 0.01 0.42 8.03 -2.39 -0.02 0.40 16 28 H 0.02 0.99 8.14 -2.39 -0.02 0.98 16 29 H 0.07 2.85 8.07 -2.39 -0.02 2.83 16 30 H 0.11 2.65 8.07 -2.39 -0.02 2.63 16 31 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.11 1.90 7.88 -2.38 -0.02 1.88 16 33 H 0.02 0.64 7.99 -2.39 -0.02 0.62 16 34 H 0.20 0.80 8.01 -2.91 -0.02 0.78 16 35 H 0.20 -0.12 8.06 -2.91 -0.02 -0.15 16 36 H 0.14 2.36 8.06 -2.91 -0.02 2.34 16 37 H 0.32 10.25 8.82 -92.71 -0.82 9.44 16 38 H 0.02 0.71 7.99 -2.39 -0.02 0.69 16 39 H 0.09 3.59 4.64 -2.39 -0.01 3.57 16 40 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 41 H 0.05 2.71 6.79 -2.39 -0.02 2.69 16 Total: -1.00 -84.65 326.61 -2.71 -87.36 By element: Atomic # 1 Polarization: 7.95 SS G_CDS: -0.60 Total: 7.34 kcal Atomic # 6 Polarization: -5.69 SS G_CDS: 5.54 Total: -0.15 kcal Atomic # 7 Polarization: -134.11 SS G_CDS: -9.68 Total: -143.80 kcal Atomic # 14 Polarization: 47.21 SS G_CDS: 2.03 Total: 49.24 kcal Total: -84.65 -2.71 -87.36 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001209733639.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.783 kcal (2) G-P(sol) polarization free energy of solvation -84.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.364 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds