Wall clock time and date at job start Mon Mar 30 2020 01:36:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86797 * 119.99630 * 2 1 4 4 H 1.48495 * 109.47551 * 270.00226 * 3 2 1 5 5 H 1.48504 * 109.47189 * 30.00889 * 3 2 1 6 6 H 1.48500 * 109.46930 * 150.00303 * 3 2 1 7 7 C 1.37874 * 120.00113 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99839 * 359.97438 * 7 2 1 9 9 C 1.50704 * 119.99954 * 179.97438 * 7 2 1 10 10 C 1.53001 * 109.47076 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47149 * 179.97438 * 10 9 7 12 12 C 1.53001 * 109.47149 * 179.97438 * 11 10 9 13 13 C 1.52998 * 109.46966 * 180.02562 * 12 11 10 14 14 O 1.42896 * 109.47357 * 180.02562 * 13 12 11 15 15 C 1.42896 * 114.00446 * 179.97438 * 14 13 12 16 16 C 1.52997 * 109.46906 * 89.99887 * 15 14 13 17 17 C 1.52999 * 109.47317 * 179.97438 * 16 15 14 18 18 C 1.53005 * 109.47159 * 300.00546 * 17 16 15 19 19 F 1.39895 * 109.46948 * 299.99392 * 18 17 16 20 20 F 1.39900 * 109.46972 * 179.97438 * 18 17 16 21 21 C 1.52997 * 109.47452 * 59.99536 * 18 17 16 22 22 C 1.53000 * 109.47231 * 209.99746 * 15 14 13 23 23 H 0.96994 * 120.00215 * 359.97438 * 1 2 3 24 24 H 1.08995 * 109.46761 * 59.99628 * 9 7 2 25 25 H 1.09000 * 109.47103 * 299.99693 * 9 7 2 26 26 H 1.08997 * 109.46932 * 60.00024 * 10 9 7 27 27 H 1.09000 * 109.47185 * 299.99987 * 10 9 7 28 28 H 1.09007 * 109.46863 * 60.00287 * 11 10 9 29 29 H 1.08996 * 109.47347 * 300.00643 * 11 10 9 30 30 H 1.08997 * 109.46932 * 60.00230 * 12 11 10 31 31 H 1.09000 * 109.47185 * 300.00194 * 12 11 10 32 32 H 1.08999 * 109.47594 * 59.99656 * 13 12 11 33 33 H 1.09000 * 109.47045 * 299.99934 * 13 12 11 34 34 H 1.09002 * 109.46984 * 330.00066 * 15 14 13 35 35 H 1.08996 * 109.47853 * 300.00254 * 16 15 14 36 36 H 1.09002 * 109.47153 * 60.00282 * 16 15 14 37 37 H 1.09000 * 109.47486 * 180.02562 * 17 16 15 38 38 H 1.09002 * 109.46716 * 60.00091 * 17 16 15 39 39 H 1.08993 * 109.47194 * 179.97438 * 21 18 17 40 40 H 1.09002 * 109.46695 * 59.99734 * 21 18 17 41 41 H 1.08992 * 109.47399 * 300.00058 * 22 15 14 42 42 H 1.09004 * 109.46724 * 60.00544 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4465 2.6526 0.7002 6 1 3.5466 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 6 4.0216 -2.6365 -0.0010 11 6 5.5516 -2.6364 -0.0022 12 6 6.0617 -4.0789 -0.0015 13 6 7.5916 -4.0789 -0.0021 14 8 8.0681 -5.4261 -0.0019 15 6 9.4926 -5.5389 -0.0030 16 6 10.0021 -5.5786 1.4390 17 6 11.5273 -5.7000 1.4380 18 6 11.9360 -6.9861 0.7170 19 9 11.3811 -8.0875 1.3775 20 9 13.3306 -7.0969 0.7155 21 6 11.4265 -6.9465 -0.7251 22 6 9.9018 -6.8248 -0.7241 23 1 -0.4850 0.8400 0.0004 24 1 3.8752 -0.6803 0.8888 25 1 3.8746 -0.6800 -0.8912 26 1 3.6580 -3.1505 -0.8907 27 1 3.6587 -3.1501 0.8892 28 1 5.9156 -2.1223 0.8874 29 1 5.9143 -2.1229 -0.8926 30 1 5.6976 -4.5935 -0.8907 31 1 5.6990 -4.5921 0.8892 32 1 7.9554 -3.5644 0.8874 33 1 7.9546 -3.5656 -0.8925 34 1 9.9246 -4.6805 -0.5175 35 1 9.7106 -4.6626 1.9529 36 1 9.5701 -6.4369 1.9536 37 1 11.8902 -5.7287 2.4654 38 1 11.9596 -4.8419 0.9233 39 1 11.7180 -7.8625 -1.2388 40 1 11.8588 -6.0883 -1.2397 41 1 9.4698 -7.6831 -0.2096 42 1 9.5388 -6.7964 -1.7515 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224370040.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:12 Heat of formation + Delta-G solvation = -211.099285 kcal Electronic energy + Delta-G solvation = -21111.119215 eV Core-core repulsion = 17531.376397 eV Total energy + Delta-G solvation = -3579.742818 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 276.164 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.99107 -47.99580 -39.98808 -37.54245 -36.48465 -34.71856 -32.44293 -32.19253 -29.94951 -28.18772 -24.94028 -24.15715 -23.32295 -22.27216 -21.72895 -21.06313 -18.86452 -18.42284 -17.88793 -17.64100 -17.28594 -16.93861 -16.32508 -15.91379 -15.79868 -15.07325 -14.85087 -14.71973 -14.50181 -14.27508 -14.20459 -13.90695 -13.72610 -13.57558 -13.40948 -13.15450 -12.93184 -12.91807 -12.64279 -12.39793 -12.28654 -11.94201 -11.91540 -11.70643 -11.55199 -11.37203 -11.28631 -11.26179 -11.12923 -10.75486 -10.38377 -8.28699 -6.33207 1.36700 1.39234 1.51591 2.37600 2.56248 2.77189 3.06506 3.08926 3.36985 3.47971 3.83704 3.85284 4.06160 4.08531 4.14245 4.17773 4.27588 4.30861 4.43243 4.50007 4.57910 4.62738 4.71172 4.78159 4.82928 4.87366 4.94584 4.96241 4.98383 5.02906 5.17011 5.19941 5.21464 5.30743 5.37254 5.60866 5.67624 5.69831 6.30336 6.34238 6.75544 7.31533 8.88443 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.050936 B = 0.002276 C = 0.002239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 549.573167 B =12298.927573 C =12504.206629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.003 4.003 3 Si 0.957 3.043 4 H -0.265 1.265 5 H -0.285 1.285 6 H -0.243 1.243 7 C -0.536 4.536 8 H 0.027 0.973 9 C -0.014 4.014 10 C -0.099 4.099 11 C -0.107 4.107 12 C -0.113 4.113 13 C 0.065 3.935 14 O -0.400 6.400 15 C 0.082 3.918 16 C -0.140 4.140 17 C -0.151 4.151 18 C 0.276 3.724 19 F -0.214 7.214 20 F -0.212 7.212 21 C -0.149 4.149 22 C -0.115 4.115 23 H 0.266 0.734 24 H 0.021 0.979 25 H 0.020 0.980 26 H 0.044 0.956 27 H 0.043 0.957 28 H 0.067 0.933 29 H 0.069 0.931 30 H 0.062 0.938 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.062 0.938 34 H 0.085 0.915 35 H 0.086 0.914 36 H 0.064 0.936 37 H 0.093 0.907 38 H 0.117 0.883 39 H 0.098 0.902 40 H 0.118 0.882 41 H 0.065 0.935 42 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.202 -11.386 -0.444 32.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.199 4.199 3 Si 0.780 3.220 4 H -0.190 1.190 5 H -0.211 1.211 6 H -0.166 1.166 7 C -0.574 4.574 8 H 0.045 0.955 9 C -0.051 4.051 10 C -0.136 4.136 11 C -0.145 4.145 12 C -0.151 4.151 13 C -0.011 4.011 14 O -0.320 6.320 15 C 0.024 3.976 16 C -0.178 4.178 17 C -0.188 4.188 18 C 0.240 3.760 19 F -0.195 7.195 20 F -0.193 7.193 21 C -0.186 4.186 22 C -0.153 4.153 23 H 0.075 0.925 24 H 0.039 0.961 25 H 0.039 0.961 26 H 0.063 0.937 27 H 0.062 0.938 28 H 0.086 0.914 29 H 0.088 0.912 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.081 0.919 34 H 0.103 0.897 35 H 0.105 0.895 36 H 0.083 0.917 37 H 0.111 0.889 38 H 0.135 0.865 39 H 0.117 0.883 40 H 0.136 0.864 41 H 0.084 0.916 42 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 29.961 -11.482 -0.423 32.089 hybrid contribution -0.354 0.477 0.253 0.646 sum 29.607 -11.005 -0.169 31.587 Atomic orbital electron populations 1.70089 1.08457 1.28193 1.52832 1.26142 0.95718 1.03922 0.94103 0.85554 0.79506 0.77667 0.79279 1.19022 1.21082 1.16623 1.21597 0.92607 0.92959 1.50280 0.95488 1.19568 0.93485 0.95481 0.96565 1.21349 0.95166 0.96785 1.00349 1.21464 0.94451 0.95957 1.02584 1.21458 0.94081 0.96949 1.02610 1.22600 0.94288 0.83016 1.01170 1.87908 1.21445 1.27461 1.95156 1.22285 0.81024 0.99012 0.95249 1.21987 0.93827 1.03941 0.98073 1.22481 0.97346 0.95862 1.03148 1.21534 0.73873 0.85336 0.95244 1.92975 1.85368 1.57787 1.83402 1.92992 1.31977 1.96756 1.97531 1.22477 0.96520 1.07042 0.92596 1.21508 0.93793 0.97464 1.02522 0.92537 0.96095 0.96138 0.93687 0.93793 0.91397 0.91187 0.91873 0.92114 0.92264 0.91932 0.89749 0.89525 0.91715 0.88877 0.86453 0.88342 0.86352 0.91618 0.88952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.05 13.96 21.45 0.30 -60.75 16 2 C 0.00 -0.16 5.47 84.65 0.46 0.30 16 3 Si 0.96 44.40 27.47 68.60 1.88 46.29 16 4 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 5 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 6 H -0.24 -10.30 6.54 99.48 0.65 -9.65 16 7 C -0.54 -31.72 9.66 25.60 0.25 -31.48 16 8 H 0.03 1.76 7.99 -2.91 -0.02 1.74 16 9 C -0.01 -0.64 4.04 29.85 0.12 -0.52 16 10 C -0.10 -3.83 5.15 30.59 0.16 -3.67 16 11 C -0.11 -3.01 5.21 30.59 0.16 -2.86 16 12 C -0.11 -2.78 5.58 30.59 0.17 -2.61 16 13 C 0.07 1.26 5.75 71.98 0.41 1.68 16 14 O -0.40 -8.29 9.99 -148.98 -1.49 -9.78 16 15 C 0.08 1.16 2.61 30.59 0.08 1.24 16 16 C -0.14 -1.88 5.42 30.59 0.17 -1.71 16 17 C -0.15 -1.59 5.45 30.60 0.17 -1.42 16 18 C 0.28 3.84 2.10 30.60 0.06 3.91 16 19 F -0.21 -4.12 16.02 44.97 0.72 -3.40 16 20 F -0.21 -3.50 17.06 44.97 0.77 -2.73 16 21 C -0.15 -1.47 5.45 30.58 0.17 -1.31 16 22 C -0.12 -1.48 5.45 30.58 0.17 -1.32 16 23 H 0.27 15.78 8.31 -92.71 -0.77 15.01 16 24 H 0.02 0.95 7.20 -2.39 -0.02 0.93 16 25 H 0.02 0.91 7.57 -2.39 -0.02 0.90 16 26 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 27 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 28 H 0.07 1.79 8.14 -2.38 -0.02 1.77 16 29 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 30 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 31 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 32 H 0.06 1.01 7.87 -2.39 -0.02 0.99 16 33 H 0.06 1.04 8.08 -2.39 -0.02 1.02 16 34 H 0.08 0.87 7.79 -2.39 -0.02 0.85 16 35 H 0.09 1.06 7.87 -2.39 -0.02 1.04 16 36 H 0.06 1.10 7.80 -2.39 -0.02 1.08 16 37 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.12 0.73 8.14 -2.39 -0.02 0.71 16 39 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 40 H 0.12 0.66 8.14 -2.39 -0.02 0.64 16 41 H 0.07 1.07 7.80 -2.39 -0.02 1.05 16 42 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 Total: -1.00 -69.68 340.45 5.64 -64.05 By element: Atomic # 1 Polarization: 5.19 SS G_CDS: 0.91 Total: 6.10 kcal Atomic # 6 Polarization: -42.31 SS G_CDS: 2.54 Total: -39.77 kcal Atomic # 7 Polarization: -61.05 SS G_CDS: 0.30 Total: -60.75 kcal Atomic # 8 Polarization: -8.29 SS G_CDS: -1.49 Total: -9.78 kcal Atomic # 9 Polarization: -7.62 SS G_CDS: 1.49 Total: -6.13 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 1.88 Total: 46.29 kcal Total: -69.68 5.64 -64.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224370040.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -147.050 kcal (2) G-P(sol) polarization free energy of solvation -69.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -216.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -211.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds