Wall clock time and date at job start Mon Mar 30 2020 02:15:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47260 * 2 1 4 4 H 1.09004 * 109.46993 * 305.12938 * 3 2 1 5 5 C 1.50692 * 109.47180 * 185.13358 * 3 2 1 6 6 H 1.07999 * 119.99892 * 239.99603 * 5 3 2 7 7 C 1.37882 * 120.00263 * 59.99546 * 5 3 2 8 8 N 1.31513 * 119.99741 * 0.02562 * 7 5 3 9 9 Si 1.86796 * 120.00145 * 179.97438 * 7 5 3 10 10 H 1.48507 * 109.47095 * 90.00025 * 9 7 5 11 11 H 1.48496 * 109.47159 * 210.00012 * 9 7 5 12 12 H 1.48501 * 109.47199 * 330.00136 * 9 7 5 13 13 N 1.46896 * 109.47279 * 65.12781 * 3 2 1 14 14 C 1.46906 * 111.00114 * 206.94832 * 13 3 2 15 15 H 1.09004 * 110.28247 * 31.10277 * 14 13 3 16 16 C 1.54256 * 110.32259 * 153.22657 * 14 13 3 17 17 C 1.54384 * 105.06011 * 118.89949 * 16 14 13 18 18 N 1.48555 * 104.59150 * 23.85594 * 17 16 14 19 19 C 1.38410 * 111.00090 * 200.96303 * 18 17 16 20 20 N 1.32491 * 119.22090 * 119.85012 * 19 18 17 21 21 C 1.32282 * 120.73727 * 179.71940 * 20 19 18 22 22 C 1.38603 * 119.19804 * 0.54743 * 21 20 19 23 23 C 1.38606 * 118.55822 * 359.72752 * 22 21 20 24 24 N 1.32278 * 119.19832 * 0.02562 * 23 22 21 25 25 C 1.48567 * 104.22325 * 320.51407 * 18 17 16 26 26 H 1.09001 * 109.47687 * 304.68710 * 1 2 3 27 27 H 1.09004 * 109.47218 * 64.68368 * 1 2 3 28 28 H 1.09001 * 109.47259 * 184.68233 * 1 2 3 29 29 H 1.08997 * 109.46952 * 239.99370 * 2 1 3 30 30 H 1.09002 * 109.46759 * 119.99119 * 2 1 3 31 31 H 0.97006 * 119.99691 * 180.02562 * 8 7 5 32 32 H 1.00902 * 110.99557 * 83.00261 * 13 3 2 33 33 H 1.09004 * 110.32603 * 237.79756 * 16 14 13 34 34 H 1.09004 * 110.32460 * 0.02562 * 16 14 13 35 35 H 1.09004 * 110.40794 * 142.63211 * 17 16 14 36 36 H 1.08993 * 110.40732 * 265.07420 * 17 16 14 37 37 H 1.07998 * 120.39882 * 180.25412 * 21 20 19 38 38 H 1.07999 * 120.72105 * 179.75196 * 22 21 20 39 39 H 1.08005 * 120.40429 * 179.97438 * 23 22 21 40 40 H 1.09000 * 110.41204 * 280.70861 * 25 18 17 41 41 H 1.08997 * 110.41544 * 158.26600 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6036 1.9822 -0.8405 5 6 3.5416 1.4444 -0.1271 6 1 4.1486 1.8884 0.6480 7 6 4.1406 0.8792 -1.2330 8 7 3.4014 0.3390 -2.1771 9 14 6.0019 0.8822 -1.3909 10 1 6.5532 -0.3497 -0.7713 11 1 6.3767 0.9243 -2.8271 12 1 6.5554 2.0743 -0.6996 13 7 1.6541 2.0983 1.2565 14 6 1.5300 3.5509 1.0757 15 1 1.2065 3.7790 0.0600 16 6 0.5345 4.1351 2.0990 17 6 1.3607 5.1342 2.9371 18 7 2.4944 5.5145 2.0556 19 6 3.5504 6.0184 2.7950 20 7 4.7247 5.4069 2.7453 21 6 5.7557 5.8658 3.4355 22 6 5.5927 6.9930 4.2254 23 6 4.3493 7.6047 4.2586 24 7 3.3611 7.0973 3.5404 25 6 2.8740 4.2462 1.3814 26 1 -0.3634 0.5848 0.8450 27 1 -0.3634 0.4395 -0.9290 28 1 -0.3634 -1.0242 0.0839 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5137 0.8901 31 1 3.8229 -0.0590 -2.9549 32 1 2.3076 1.8803 1.9937 33 1 -0.2768 4.6515 1.5858 34 1 0.1383 3.3441 2.7358 35 1 0.7609 6.0102 3.1844 36 1 1.7287 4.6558 3.8447 37 1 6.7115 5.3655 3.3877 38 1 6.4167 7.3864 4.8021 39 1 4.1889 8.4844 4.8643 40 1 3.4788 3.6288 2.0456 41 1 3.4136 4.4535 0.4574 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255150261.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:05 Heat of formation + Delta-G solvation = 69.125922 kcal Electronic energy + Delta-G solvation = -21786.562699 eV Core-core repulsion = 18701.953295 eV Total energy + Delta-G solvation = -3084.609404 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.16697 -38.68605 -35.78968 -33.72010 -33.13206 -31.70294 -30.67674 -29.23669 -27.49913 -25.79164 -24.39776 -23.64489 -22.57780 -21.27281 -19.91952 -19.50561 -17.63941 -17.33084 -16.53248 -15.81179 -15.72196 -14.90666 -14.73705 -14.47362 -13.78074 -13.58627 -13.50420 -13.17714 -12.82227 -12.36529 -12.21003 -12.03299 -11.38472 -11.28119 -11.22720 -10.99700 -10.87181 -10.84391 -10.73676 -10.65848 -10.20039 -10.16867 -10.03034 -9.57459 -9.42104 -9.15224 -9.00482 -8.38230 -8.34504 -7.32316 -5.97780 -4.09666 0.93397 1.11644 3.28755 3.36121 3.36865 3.40130 3.78357 4.15414 4.42232 4.56519 4.75658 4.97208 5.09242 5.10852 5.15936 5.24646 5.32019 5.56296 5.67581 5.79420 5.87226 5.97001 6.18198 6.24308 6.34792 6.40189 6.46029 6.53746 6.67244 6.71465 6.79525 6.83755 7.14457 7.19103 7.34382 7.45260 7.60572 7.80322 8.09200 8.14022 8.19202 8.33556 8.63690 9.01986 9.58062 11.02801 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.016583 B = 0.005811 C = 0.004474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1688.078430 B = 4817.399798 C = 6257.316121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.106 4.106 3 C 0.214 3.786 4 H 0.033 0.967 5 C -0.541 4.541 6 H 0.056 0.944 7 C 0.068 3.932 8 N -0.885 5.885 9 Si 0.885 3.115 10 H -0.282 1.282 11 H -0.287 1.287 12 H -0.274 1.274 13 N -0.677 5.677 14 C 0.093 3.907 15 H 0.083 0.917 16 C -0.119 4.119 17 C 0.056 3.944 18 N -0.445 5.445 19 C 0.490 3.510 20 N -0.541 5.541 21 C 0.172 3.828 22 C -0.269 4.269 23 C 0.168 3.832 24 N -0.533 5.533 25 C 0.036 3.964 26 H 0.049 0.951 27 H 0.035 0.965 28 H 0.024 0.976 29 H 0.090 0.910 30 H 0.029 0.971 31 H 0.260 0.740 32 H 0.329 0.671 33 H 0.071 0.929 34 H 0.084 0.916 35 H 0.088 0.912 36 H 0.046 0.954 37 H 0.166 0.834 38 H 0.143 0.857 39 H 0.166 0.834 40 H 0.072 0.928 41 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.378 10.585 11.968 15.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.145 4.145 3 C 0.106 3.894 4 H 0.051 0.949 5 C -0.580 4.580 6 H 0.074 0.926 7 C -0.134 4.134 8 N -0.524 5.524 9 Si 0.713 3.287 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.199 1.199 13 N -0.306 5.306 14 C -0.019 4.019 15 H 0.102 0.898 16 C -0.158 4.158 17 C -0.070 4.070 18 N -0.165 5.165 19 C 0.134 3.866 20 N -0.260 5.260 21 C 0.004 3.996 22 C -0.293 4.293 23 C 0.000 4.000 24 N -0.251 5.251 25 C -0.092 4.092 26 H 0.068 0.932 27 H 0.055 0.945 28 H 0.043 0.957 29 H 0.108 0.892 30 H 0.048 0.952 31 H 0.070 0.930 32 H 0.146 0.854 33 H 0.090 0.910 34 H 0.103 0.897 35 H 0.106 0.894 36 H 0.065 0.935 37 H 0.183 0.817 38 H 0.161 0.839 39 H 0.183 0.817 40 H 0.091 0.909 41 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -1.288 10.365 10.726 14.971 hybrid contribution 3.276 0.227 0.660 3.350 sum 1.988 10.591 11.386 15.677 Atomic orbital electron populations 1.21718 0.99056 0.98456 1.00364 1.21500 0.92062 0.99276 1.01642 1.19240 0.93080 0.91280 0.85810 0.94878 1.21879 0.92556 1.38048 1.05546 0.92567 1.24906 0.97705 0.95038 0.95757 1.69878 1.34716 1.38370 1.09421 0.86702 0.86407 0.78410 0.77162 1.20770 1.21329 1.19910 1.61053 1.53836 1.05126 1.10564 1.22235 0.91656 0.89255 0.98772 0.89840 1.22522 0.97914 0.97371 0.98004 1.23082 0.90852 0.99156 0.93909 1.61884 1.04123 1.28414 1.22080 1.21475 0.89808 0.88141 0.87176 1.68531 1.01019 1.32125 1.24344 1.23131 0.96999 0.91398 0.88038 1.22694 1.00332 1.00899 1.05384 1.23060 0.87909 0.96822 0.92250 1.68084 1.35107 1.12038 1.09822 1.23977 0.99094 0.86663 0.99513 0.93152 0.94548 0.95725 0.89157 0.95195 0.92960 0.85380 0.90986 0.89728 0.89355 0.93547 0.81705 0.83867 0.81650 0.90945 0.89181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.80 9.86 37.16 0.37 -2.44 16 2 C -0.11 -2.49 5.45 -26.73 -0.15 -2.64 16 3 C 0.21 5.09 1.98 -68.87 -0.14 4.95 16 4 H 0.03 0.88 7.38 -51.93 -0.38 0.50 16 5 C -0.54 -14.11 8.02 -34.44 -0.28 -14.38 16 6 H 0.06 1.47 7.10 -52.49 -0.37 1.10 16 7 C 0.07 1.84 5.29 -17.82 -0.09 1.75 16 8 N -0.89 -24.74 11.29 55.43 0.63 -24.11 16 9 Si 0.89 21.15 29.54 -169.99 -5.02 16.13 16 10 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 11 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 12 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 13 N -0.68 -13.49 5.38 -99.51 -0.54 -14.03 16 14 C 0.09 1.69 3.38 -66.33 -0.22 1.47 16 15 H 0.08 1.65 7.38 -51.93 -0.38 1.26 16 16 C -0.12 -1.76 6.79 -25.35 -0.17 -1.93 16 17 C 0.06 0.82 6.19 -2.18 -0.01 0.81 16 18 N -0.45 -7.60 5.46 -170.97 -0.93 -8.53 16 19 C 0.49 8.21 7.00 -322.80 -2.26 5.95 16 20 N -0.54 -8.99 8.48 -13.93 -0.12 -9.11 16 21 C 0.17 2.15 11.30 -17.22 -0.19 1.96 16 22 C -0.27 -2.68 10.16 -39.31 -0.40 -3.08 16 23 C 0.17 1.85 11.30 -17.22 -0.19 1.66 16 24 N -0.53 -7.94 10.14 -13.93 -0.14 -8.09 16 25 C 0.04 0.66 4.57 -2.18 -0.01 0.65 16 26 H 0.05 0.97 7.63 -51.93 -0.40 0.57 16 27 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 28 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.09 2.38 5.95 -51.93 -0.31 2.07 16 30 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 32 H 0.33 6.63 7.69 -39.29 -0.30 6.33 16 33 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.08 1.21 7.95 -51.93 -0.41 0.80 16 35 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 36 H 0.05 0.68 7.97 -51.93 -0.41 0.27 16 37 H 0.17 1.58 8.06 -52.49 -0.42 1.16 16 38 H 0.14 0.91 8.06 -52.49 -0.42 0.48 16 39 H 0.17 1.18 8.06 -52.48 -0.42 0.75 16 40 H 0.07 1.44 6.39 -51.93 -0.33 1.10 16 41 H 0.09 1.90 8.14 -51.93 -0.42 1.47 16 LS Contribution 329.70 15.07 4.97 4.97 Total: -1.00 -29.35 329.70 -11.16 -40.51 By element: Atomic # 1 Polarization: 13.79 SS G_CDS: -6.25 Total: 7.54 kcal Atomic # 6 Polarization: -1.52 SS G_CDS: -3.76 Total: -5.28 kcal Atomic # 7 Polarization: -62.76 SS G_CDS: -1.10 Total: -63.87 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -29.35 -11.16 -40.51 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255150261.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.633 kcal (2) G-P(sol) polarization free energy of solvation -29.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.507 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds