Wall clock time and date at job start Mon Mar 30 2020 02:15:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47260 * 2 1 4 4 H 1.09004 * 109.46993 * 305.12938 * 3 2 1 5 5 C 1.50692 * 109.47180 * 185.13358 * 3 2 1 6 6 H 1.07999 * 119.99892 * 239.99603 * 5 3 2 7 7 C 1.37882 * 120.00263 * 59.99546 * 5 3 2 8 8 N 1.31513 * 119.99741 * 0.02562 * 7 5 3 9 9 Si 1.86796 * 120.00145 * 179.97438 * 7 5 3 10 10 H 1.48507 * 109.47095 * 90.00025 * 9 7 5 11 11 H 1.48496 * 109.47159 * 210.00012 * 9 7 5 12 12 H 1.48501 * 109.47199 * 330.00136 * 9 7 5 13 13 N 1.46896 * 109.47279 * 65.12781 * 3 2 1 14 14 C 1.46906 * 111.00114 * 206.94832 * 13 3 2 15 15 H 1.09004 * 110.28247 * 31.10277 * 14 13 3 16 16 C 1.54256 * 110.32259 * 153.22657 * 14 13 3 17 17 C 1.54384 * 105.06011 * 118.89949 * 16 14 13 18 18 N 1.48555 * 104.59150 * 23.85594 * 17 16 14 19 19 C 1.38410 * 111.00090 * 200.96303 * 18 17 16 20 20 N 1.32491 * 119.22090 * 119.85012 * 19 18 17 21 21 C 1.32282 * 120.73727 * 179.71940 * 20 19 18 22 22 C 1.38603 * 119.19804 * 0.54743 * 21 20 19 23 23 C 1.38606 * 118.55822 * 359.72752 * 22 21 20 24 24 N 1.32278 * 119.19832 * 0.02562 * 23 22 21 25 25 C 1.48567 * 104.22325 * 320.51407 * 18 17 16 26 26 H 1.09001 * 109.47687 * 304.68710 * 1 2 3 27 27 H 1.09004 * 109.47218 * 64.68368 * 1 2 3 28 28 H 1.09001 * 109.47259 * 184.68233 * 1 2 3 29 29 H 1.08997 * 109.46952 * 239.99370 * 2 1 3 30 30 H 1.09002 * 109.46759 * 119.99119 * 2 1 3 31 31 H 0.97006 * 119.99691 * 180.02562 * 8 7 5 32 32 H 1.00902 * 110.99557 * 83.00261 * 13 3 2 33 33 H 1.09004 * 110.32603 * 237.79756 * 16 14 13 34 34 H 1.09004 * 110.32460 * 0.02562 * 16 14 13 35 35 H 1.09004 * 110.40794 * 142.63211 * 17 16 14 36 36 H 1.08993 * 110.40732 * 265.07420 * 17 16 14 37 37 H 1.07998 * 120.39882 * 180.25412 * 21 20 19 38 38 H 1.07999 * 120.72105 * 179.75196 * 22 21 20 39 39 H 1.08005 * 120.40429 * 179.97438 * 23 22 21 40 40 H 1.09000 * 110.41204 * 280.70861 * 25 18 17 41 41 H 1.08997 * 110.41544 * 158.26600 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6036 1.9822 -0.8405 5 6 3.5416 1.4444 -0.1271 6 1 4.1486 1.8884 0.6480 7 6 4.1406 0.8792 -1.2330 8 7 3.4014 0.3390 -2.1771 9 14 6.0019 0.8822 -1.3909 10 1 6.5532 -0.3497 -0.7713 11 1 6.3767 0.9243 -2.8271 12 1 6.5554 2.0743 -0.6996 13 7 1.6541 2.0983 1.2565 14 6 1.5300 3.5509 1.0757 15 1 1.2065 3.7790 0.0600 16 6 0.5345 4.1351 2.0990 17 6 1.3607 5.1342 2.9371 18 7 2.4944 5.5145 2.0556 19 6 3.5504 6.0184 2.7950 20 7 4.7247 5.4069 2.7453 21 6 5.7557 5.8658 3.4355 22 6 5.5927 6.9930 4.2254 23 6 4.3493 7.6047 4.2586 24 7 3.3611 7.0973 3.5404 25 6 2.8740 4.2462 1.3814 26 1 -0.3634 0.5848 0.8450 27 1 -0.3634 0.4395 -0.9290 28 1 -0.3634 -1.0242 0.0839 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5137 0.8901 31 1 3.8229 -0.0590 -2.9549 32 1 2.3076 1.8803 1.9937 33 1 -0.2768 4.6515 1.5858 34 1 0.1383 3.3441 2.7358 35 1 0.7609 6.0102 3.1844 36 1 1.7287 4.6558 3.8447 37 1 6.7115 5.3655 3.3877 38 1 6.4167 7.3864 4.8021 39 1 4.1889 8.4844 4.8643 40 1 3.4788 3.6288 2.0456 41 1 3.4136 4.4535 0.4574 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255150261.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:05 Heat of formation + Delta-G solvation = 50.701166 kcal Electronic energy + Delta-G solvation = -21787.361656 eV Core-core repulsion = 18701.953295 eV Total energy + Delta-G solvation = -3085.408361 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.23658 -40.00147 -37.49702 -34.74914 -34.68591 -33.45715 -32.12203 -30.44887 -29.08006 -27.59185 -25.41551 -24.87713 -24.34072 -22.49403 -21.50622 -21.20066 -18.77126 -18.66733 -18.26950 -17.19722 -16.73197 -16.58909 -15.89451 -15.79669 -15.35353 -15.06797 -14.73300 -14.57939 -14.39392 -13.92429 -13.65126 -13.37825 -13.15789 -13.09452 -12.87418 -12.63536 -12.51274 -12.34240 -12.02359 -11.94026 -11.90059 -11.60996 -11.46886 -11.23398 -11.13786 -10.91912 -10.42545 -10.17629 -9.53861 -9.07591 -8.03437 -6.22769 -0.04923 0.18337 1.36106 1.38490 1.47255 2.24971 2.41113 2.77401 3.15655 3.17648 3.47090 3.76235 3.78995 3.82548 4.01612 4.22232 4.25905 4.28685 4.36385 4.49979 4.64905 4.71835 4.79758 4.82070 4.89652 4.97338 5.01258 5.10055 5.22702 5.26269 5.32644 5.41698 5.48410 5.57780 5.68681 5.74264 5.82109 6.14294 6.22385 6.27857 6.41170 6.80845 7.02628 7.14817 7.47756 8.93689 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.016583 B = 0.005811 C = 0.004474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1688.078430 B = 4817.399798 C = 6257.316121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.102 4.102 3 C 0.222 3.778 4 H 0.001 0.999 5 C -0.546 4.546 6 H 0.050 0.950 7 C 0.022 3.978 8 N -0.911 5.911 9 Si 0.941 3.059 10 H -0.275 1.275 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.662 5.662 14 C 0.091 3.909 15 H 0.063 0.937 16 C -0.105 4.105 17 C 0.063 3.937 18 N -0.456 5.456 19 C 0.463 3.537 20 N -0.582 5.582 21 C 0.149 3.851 22 C -0.242 4.242 23 C 0.161 3.839 24 N -0.549 5.549 25 C 0.055 3.945 26 H 0.061 0.939 27 H 0.029 0.971 28 H 0.044 0.956 29 H 0.060 0.940 30 H 0.028 0.972 31 H 0.260 0.740 32 H 0.329 0.671 33 H 0.088 0.912 34 H 0.094 0.906 35 H 0.105 0.895 36 H 0.045 0.955 37 H 0.188 0.812 38 H 0.189 0.811 39 H 0.209 0.791 40 H 0.057 0.943 41 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.828 12.005 14.286 18.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.141 4.141 3 C 0.113 3.887 4 H 0.019 0.981 5 C -0.586 4.586 6 H 0.068 0.932 7 C -0.178 4.178 8 N -0.550 5.550 9 Si 0.768 3.232 10 H -0.201 1.201 11 H -0.212 1.212 12 H -0.201 1.201 13 N -0.291 5.291 14 C -0.021 4.021 15 H 0.081 0.919 16 C -0.143 4.143 17 C -0.062 4.062 18 N -0.176 5.176 19 C 0.107 3.893 20 N -0.303 5.303 21 C -0.016 4.016 22 C -0.265 4.265 23 C -0.006 4.006 24 N -0.268 5.268 25 C -0.074 4.074 26 H 0.080 0.920 27 H 0.048 0.952 28 H 0.063 0.937 29 H 0.078 0.922 30 H 0.047 0.953 31 H 0.069 0.931 32 H 0.147 0.853 33 H 0.106 0.894 34 H 0.113 0.887 35 H 0.123 0.877 36 H 0.063 0.937 37 H 0.205 0.795 38 H 0.206 0.794 39 H 0.226 0.774 40 H 0.075 0.925 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.818 11.807 13.077 17.637 hybrid contribution 3.238 -0.094 0.032 3.239 sum 2.419 11.713 13.109 17.745 Atomic orbital electron populations 1.21578 0.96357 0.99935 1.00500 1.21355 0.94458 0.98303 0.99986 1.19002 0.91697 0.91631 0.86375 0.98124 1.22135 0.93898 1.37287 1.05234 0.93194 1.25567 1.01363 0.95100 0.95738 1.70000 1.36032 1.39178 1.09797 0.85817 0.82099 0.78298 0.76975 1.20086 1.21171 1.20111 1.61024 1.53160 1.06199 1.08699 1.22251 0.92679 0.88190 0.98978 0.91904 1.22422 0.97239 0.97594 0.97074 1.23090 0.90207 0.99594 0.93331 1.61889 1.05170 1.27183 1.23393 1.21457 0.89804 0.89296 0.88767 1.68454 1.02001 1.33741 1.26057 1.23694 0.96971 0.92760 0.88187 1.23148 1.01144 0.98765 1.03399 1.23889 0.87580 0.97648 0.91497 1.68095 1.36825 1.11561 1.10279 1.23518 0.98433 0.87706 0.97732 0.91974 0.95195 0.93717 0.92184 0.95343 0.93065 0.85349 0.89378 0.88718 0.87722 0.93695 0.79533 0.79351 0.77421 0.92490 0.92806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.03 9.86 71.98 0.71 -4.32 16 2 C -0.10 -4.87 5.45 30.59 0.17 -4.71 16 3 C 0.22 10.90 1.98 44.17 0.09 10.99 16 4 H 0.00 0.05 7.38 -2.39 -0.02 0.03 16 5 C -0.55 -29.40 8.02 25.60 0.21 -29.20 16 6 H 0.05 2.70 7.10 -2.91 -0.02 2.68 16 7 C 0.02 1.22 5.29 84.66 0.45 1.67 16 8 N -0.91 -52.33 11.29 21.45 0.24 -52.09 16 9 Si 0.94 44.32 29.54 68.60 2.03 46.35 16 10 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 11 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 12 H -0.28 -12.96 7.11 99.48 0.71 -12.26 16 13 N -0.66 -26.86 5.38 -468.75 -2.52 -29.38 16 14 C 0.09 3.39 3.38 45.81 0.15 3.54 16 15 H 0.06 2.60 7.38 -2.39 -0.02 2.58 16 16 C -0.10 -2.99 6.79 31.49 0.21 -2.77 16 17 C 0.06 1.80 6.19 86.45 0.54 2.33 16 18 N -0.46 -15.76 5.46 -694.82 -3.79 -19.55 16 19 C 0.46 15.46 7.00 261.48 1.83 17.29 16 20 N -0.58 -19.42 8.48 -197.98 -1.68 -21.10 16 21 C 0.15 3.50 11.30 84.71 0.96 4.46 16 22 C -0.24 -3.94 10.16 22.44 0.23 -3.72 16 23 C 0.16 3.01 11.30 84.71 0.96 3.97 16 24 N -0.55 -15.50 10.14 -197.97 -2.01 -17.51 16 25 C 0.06 2.15 4.57 86.45 0.40 2.55 16 26 H 0.06 2.31 7.63 -2.39 -0.02 2.29 16 27 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 28 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 29 H 0.06 3.25 5.95 -2.39 -0.01 3.23 16 30 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.26 14.33 8.31 -92.70 -0.77 13.56 16 32 H 0.33 13.48 7.69 -89.69 -0.69 12.79 16 33 H 0.09 2.25 8.14 -2.38 -0.02 2.23 16 34 H 0.09 2.54 7.95 -2.39 -0.02 2.52 16 35 H 0.10 2.63 8.14 -2.38 -0.02 2.61 16 36 H 0.04 1.27 7.97 -2.39 -0.02 1.25 16 37 H 0.19 3.26 8.06 -2.91 -0.02 3.23 16 38 H 0.19 1.32 8.06 -2.91 -0.02 1.30 16 39 H 0.21 1.95 8.06 -2.91 -0.02 1.93 16 40 H 0.06 2.37 6.39 -2.39 -0.02 2.35 16 41 H 0.05 2.43 8.14 -2.39 -0.02 2.41 16 Total: -1.00 -66.40 329.70 -0.52 -66.91 By element: Atomic # 1 Polarization: 23.95 SS G_CDS: 0.33 Total: 24.28 kcal Atomic # 6 Polarization: -4.80 SS G_CDS: 6.89 Total: 2.09 kcal Atomic # 7 Polarization: -129.87 SS G_CDS: -9.76 Total: -139.63 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.35 kcal Total: -66.40 -0.52 -66.91 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255150261.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.616 kcal (2) G-P(sol) polarization free energy of solvation -66.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.914 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds