Wall clock time and date at job start Mon Mar 30 2020 02:50:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47173 * 2 1 4 4 H 1.09007 * 109.47253 * 55.10112 * 3 2 1 5 5 C 1.50705 * 109.46870 * 175.09591 * 3 2 1 6 6 H 1.07997 * 119.99487 * 120.00400 * 5 3 2 7 7 C 1.37873 * 120.00051 * 299.99776 * 5 3 2 8 8 N 1.31516 * 120.00187 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 119.99924 * 180.02562 * 7 5 3 10 10 H 1.48495 * 109.47459 * 59.99787 * 9 7 5 11 11 H 1.48493 * 109.47491 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.46815 * 300.00276 * 9 7 5 13 13 N 1.46892 * 109.47330 * 295.09715 * 3 2 1 14 14 C 1.46893 * 111.00253 * 154.21646 * 13 3 2 15 15 C 1.53003 * 109.47084 * 185.20473 * 14 13 3 16 16 N 1.46904 * 109.47039 * 179.97438 * 15 14 13 17 17 C 1.46848 * 111.00021 * 169.99968 * 16 15 14 18 18 C 1.53034 * 109.52693 * 185.84376 * 17 16 15 19 19 C 1.53122 * 109.27593 * 300.82467 * 18 17 16 20 20 F 1.39899 * 109.51858 * 297.74542 * 19 18 17 21 21 F 1.39898 * 109.52024 * 177.56068 * 19 18 17 22 22 C 1.53109 * 109.16540 * 57.64985 * 19 18 17 23 23 C 1.46845 * 111.00424 * 294.21008 * 16 15 14 24 24 H 1.09003 * 109.46964 * 60.44817 * 1 2 3 25 25 H 1.08999 * 109.47228 * 180.44790 * 1 2 3 26 26 H 1.08998 * 109.47157 * 300.45061 * 1 2 3 27 27 H 1.08996 * 109.47353 * 239.99557 * 2 1 3 28 28 H 1.09000 * 109.47033 * 119.99648 * 2 1 3 29 29 H 0.96994 * 119.99837 * 180.02562 * 8 7 5 30 30 H 1.00903 * 111.00139 * 278.17285 * 13 3 2 31 31 H 1.09000 * 109.47315 * 65.20885 * 14 13 3 32 32 H 1.08998 * 109.47454 * 305.20064 * 14 13 3 33 33 H 1.08995 * 109.47329 * 60.00396 * 15 14 13 34 34 H 1.08992 * 109.47432 * 299.99729 * 15 14 13 35 35 H 1.09005 * 109.46211 * 305.85538 * 17 16 15 36 36 H 1.08997 * 109.46330 * 65.82660 * 17 16 15 37 37 H 1.09007 * 109.50347 * 60.75885 * 18 17 16 38 38 H 1.08998 * 109.50941 * 180.87635 * 18 17 16 39 39 H 1.09002 * 109.50929 * 182.40818 * 22 19 18 40 40 H 1.09005 * 109.53433 * 62.30884 * 22 19 18 41 41 H 1.08994 * 109.46130 * 294.17454 * 23 16 15 42 42 H 1.09004 * 109.46189 * 54.15561 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6068 1.9811 0.8429 5 6 3.5421 1.4442 0.1215 6 1 4.1461 1.8892 -0.6554 7 6 4.1452 0.8777 1.2243 8 7 3.4096 0.3354 2.1701 9 14 6.0071 0.8804 1.3752 10 1 6.5017 2.2805 1.3754 11 1 6.4021 0.2152 2.6427 12 1 6.5978 0.1470 0.2269 13 7 1.6494 2.1000 -1.2541 14 6 1.5528 3.5551 -1.0779 15 6 1.0203 4.1904 -2.3639 16 7 0.9231 5.6456 -2.1873 17 6 0.6443 6.3132 -3.4652 18 6 0.6943 7.8304 -3.2712 19 6 -0.3434 8.2404 -2.2226 20 9 -1.6244 7.9122 -2.6794 21 9 -0.2641 9.6194 -2.0006 22 6 -0.0595 7.4945 -0.9160 23 6 -0.0876 5.9870 -1.1783 24 1 -0.3633 0.5069 -0.8940 25 1 -0.3633 -1.0276 0.0080 26 1 -0.3633 0.5208 0.8859 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.8339 -0.0628 2.9461 30 1 2.2894 1.8677 -1.9988 31 1 2.5396 3.9603 -0.8541 32 1 0.8736 3.7771 -0.2548 33 1 0.0335 3.7853 -2.5877 34 1 1.6994 3.9685 -3.1870 35 1 1.3920 6.0164 -4.2008 36 1 -0.3460 6.0246 -3.8173 37 1 1.6886 8.1214 -2.9323 38 1 0.4720 8.3258 -4.2163 39 1 -0.8203 7.7497 -0.1783 40 1 0.9228 7.7801 -0.5393 41 1 -1.0744 5.6999 -1.5411 42 1 0.1286 5.4534 -0.2527 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255158862.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:53 Heat of formation + Delta-G solvation = -112.318362 kcal Electronic energy + Delta-G solvation = -22226.582232 eV Core-core repulsion = 18683.415628 eV Total energy + Delta-G solvation = -3543.166604 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 276.171 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -49.10497 -47.10979 -38.78340 -36.21635 -33.58676 -31.98762 -31.41554 -30.89329 -27.73520 -25.67137 -24.04430 -23.48464 -22.51415 -20.87344 -20.17431 -19.45608 -17.58961 -16.95195 -16.69995 -16.40522 -15.54886 -15.25485 -14.83434 -14.70583 -14.04189 -13.93285 -13.66818 -13.41968 -13.20352 -13.03532 -12.84162 -12.58230 -12.51366 -12.26925 -12.03327 -11.59444 -11.39815 -11.32675 -11.22691 -11.02481 -10.94510 -10.73278 -10.62834 -10.32675 -10.05112 -9.60852 -9.48351 -9.07926 -8.38969 -8.36633 -7.27821 -6.00520 -4.13505 3.27789 3.33091 3.35466 3.55967 3.73990 3.91297 4.17818 4.31265 4.39026 4.73459 5.00485 5.08918 5.17195 5.24676 5.31612 5.33215 5.44932 5.49554 5.62766 5.69959 5.74586 5.86685 5.94910 6.01161 6.34017 6.43596 6.49825 6.65503 6.69856 6.98478 7.05541 7.12752 7.16247 7.42645 7.58124 7.76697 8.07156 8.13095 8.31696 8.64124 8.98573 9.54183 10.99702 Molecular weight = 276.17amu Principal moments of inertia in cm(-1) A = 0.023426 B = 0.003753 C = 0.003491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.987086 B = 7458.490656 C = 8018.821186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.106 4.106 3 C 0.217 3.783 4 H 0.031 0.969 5 C -0.546 4.546 6 H 0.053 0.947 7 C 0.068 3.932 8 N -0.886 5.886 9 Si 0.889 3.111 10 H -0.278 1.278 11 H -0.287 1.287 12 H -0.277 1.277 13 N -0.691 5.691 14 C 0.071 3.929 15 C 0.061 3.939 16 N -0.539 5.539 17 C 0.056 3.944 18 C -0.153 4.153 19 C 0.284 3.716 20 F -0.202 7.202 21 F -0.204 7.204 22 C -0.154 4.154 23 C 0.052 3.948 24 H 0.047 0.953 25 H 0.024 0.976 26 H 0.035 0.965 27 H 0.030 0.970 28 H 0.090 0.910 29 H 0.262 0.738 30 H 0.327 0.673 31 H 0.037 0.963 32 H 0.059 0.941 33 H 0.040 0.960 34 H 0.072 0.928 35 H 0.088 0.912 36 H 0.042 0.958 37 H 0.103 0.897 38 H 0.088 0.912 39 H 0.090 0.910 40 H 0.103 0.897 41 H 0.043 0.957 42 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.769 12.638 -8.838 16.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.145 4.145 3 C 0.109 3.891 4 H 0.049 0.951 5 C -0.585 4.585 6 H 0.071 0.929 7 C -0.135 4.135 8 N -0.524 5.524 9 Si 0.717 3.283 10 H -0.204 1.204 11 H -0.212 1.212 12 H -0.203 1.203 13 N -0.320 5.320 14 C -0.060 4.060 15 C -0.067 4.067 16 N -0.265 5.265 17 C -0.072 4.072 18 C -0.191 4.191 19 C 0.248 3.752 20 F -0.184 7.184 21 F -0.185 7.185 22 C -0.192 4.192 23 C -0.076 4.076 24 H 0.066 0.934 25 H 0.043 0.957 26 H 0.054 0.946 27 H 0.049 0.951 28 H 0.108 0.892 29 H 0.072 0.928 30 H 0.143 0.857 31 H 0.055 0.945 32 H 0.077 0.923 33 H 0.058 0.942 34 H 0.090 0.910 35 H 0.107 0.893 36 H 0.060 0.940 37 H 0.121 0.879 38 H 0.107 0.893 39 H 0.108 0.892 40 H 0.122 0.878 41 H 0.061 0.939 42 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -7.022 12.622 -8.380 16.699 hybrid contribution 1.141 0.119 -0.068 1.149 sum -5.881 12.741 -8.449 16.380 Atomic orbital electron populations 1.21699 0.99068 0.98343 1.00320 1.21500 0.92038 0.99262 1.01676 1.19118 0.92821 0.91143 0.85983 0.95122 1.21822 0.92713 1.38268 1.05663 0.92896 1.24923 0.97926 0.94950 0.95671 1.69865 1.34936 1.38142 1.09431 0.86713 0.86055 0.78195 0.77352 1.20382 1.21248 1.20295 1.60838 1.55089 1.05881 1.10231 1.21705 0.99535 0.89800 0.94923 1.22110 1.00341 0.84487 0.99717 1.61915 1.47106 1.09927 1.07517 1.22009 1.00961 0.91880 0.92340 1.22583 0.99781 0.97939 0.98819 1.21239 0.80563 0.76666 0.96731 1.92988 1.42479 1.92323 1.90569 1.92998 1.96371 1.33313 1.95835 1.22603 1.05436 0.96261 0.94923 1.22107 0.93972 0.93697 0.97783 0.93394 0.95664 0.94551 0.95108 0.89164 0.92823 0.85724 0.94519 0.92259 0.94163 0.90990 0.89319 0.93971 0.87878 0.89315 0.89179 0.87827 0.93872 0.88451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.78 9.79 37.16 0.36 -2.42 16 2 C -0.11 -2.50 5.45 -26.73 -0.15 -2.65 16 3 C 0.22 5.24 1.98 -68.87 -0.14 5.11 16 4 H 0.03 0.83 7.70 -51.92 -0.40 0.43 16 5 C -0.55 -14.43 8.47 -34.44 -0.29 -14.72 16 6 H 0.05 1.39 7.73 -52.49 -0.41 0.98 16 7 C 0.07 1.83 5.29 -17.82 -0.09 1.74 16 8 N -0.89 -24.72 11.29 55.43 0.63 -24.09 16 9 Si 0.89 20.90 29.54 -169.99 -5.02 15.87 16 10 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 12 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 13 N -0.69 -13.85 5.68 -107.95 -0.61 -14.46 16 14 C 0.07 1.25 5.44 -3.83 -0.02 1.23 16 15 C 0.06 0.86 5.26 -3.82 -0.02 0.84 16 16 N -0.54 -6.73 4.66 -234.67 -1.09 -7.82 16 17 C 0.06 0.58 5.35 -3.83 -0.02 0.56 16 18 C -0.15 -1.44 5.62 -26.65 -0.15 -1.59 16 19 C 0.28 3.10 2.12 -26.61 -0.06 3.05 16 20 F -0.20 -2.50 16.22 2.25 0.04 -2.47 16 21 F -0.20 -2.43 17.07 2.25 0.04 -2.39 16 22 C -0.15 -1.61 5.62 -26.66 -0.15 -1.76 16 23 C 0.05 0.62 5.18 -3.83 -0.02 0.60 16 24 H 0.05 0.93 7.76 -51.93 -0.40 0.53 16 25 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 27 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.09 2.38 5.95 -51.93 -0.31 2.07 16 29 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 30 H 0.33 6.47 8.46 -39.29 -0.33 6.14 16 31 H 0.04 0.72 8.11 -51.93 -0.42 0.30 16 32 H 0.06 1.08 6.21 -51.93 -0.32 0.75 16 33 H 0.04 0.58 8.12 -51.93 -0.42 0.16 16 34 H 0.07 0.97 7.99 -51.93 -0.41 0.56 16 35 H 0.09 0.83 8.02 -51.93 -0.42 0.41 16 36 H 0.04 0.45 7.87 -51.93 -0.41 0.04 16 37 H 0.10 0.92 8.14 -51.92 -0.42 0.50 16 38 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 41 H 0.04 0.52 7.87 -51.93 -0.41 0.12 16 42 H 0.10 1.23 6.21 -51.93 -0.32 0.91 16 LS Contribution 334.66 15.07 5.04 5.04 Total: -1.00 -27.45 334.66 -8.80 -36.26 By element: Atomic # 1 Polarization: 11.13 SS G_CDS: -7.08 Total: 4.05 kcal Atomic # 6 Polarization: -9.26 SS G_CDS: -0.74 Total: -10.00 kcal Atomic # 7 Polarization: -45.29 SS G_CDS: -1.08 Total: -46.37 kcal Atomic # 9 Polarization: -4.93 SS G_CDS: 0.07 Total: -4.86 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -27.45 -8.80 -36.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255158862.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.060 kcal (2) G-P(sol) polarization free energy of solvation -27.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds