Wall clock time and date at job start Mon Mar 30 2020 02:50:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47173 * 2 1 4 4 H 1.09007 * 109.47253 * 55.10112 * 3 2 1 5 5 C 1.50705 * 109.46870 * 175.09591 * 3 2 1 6 6 H 1.07997 * 119.99487 * 120.00400 * 5 3 2 7 7 C 1.37873 * 120.00051 * 299.99776 * 5 3 2 8 8 N 1.31516 * 120.00187 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 119.99924 * 180.02562 * 7 5 3 10 10 H 1.48495 * 109.47459 * 59.99787 * 9 7 5 11 11 H 1.48493 * 109.47491 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.46815 * 300.00276 * 9 7 5 13 13 N 1.46892 * 109.47330 * 295.09715 * 3 2 1 14 14 C 1.46893 * 111.00253 * 154.21646 * 13 3 2 15 15 C 1.53003 * 109.47084 * 185.20473 * 14 13 3 16 16 N 1.46904 * 109.47039 * 179.97438 * 15 14 13 17 17 C 1.46848 * 111.00021 * 169.99968 * 16 15 14 18 18 C 1.53034 * 109.52693 * 185.84376 * 17 16 15 19 19 C 1.53122 * 109.27593 * 300.82467 * 18 17 16 20 20 F 1.39899 * 109.51858 * 297.74542 * 19 18 17 21 21 F 1.39898 * 109.52024 * 177.56068 * 19 18 17 22 22 C 1.53109 * 109.16540 * 57.64985 * 19 18 17 23 23 C 1.46845 * 111.00424 * 294.21008 * 16 15 14 24 24 H 1.09003 * 109.46964 * 60.44817 * 1 2 3 25 25 H 1.08999 * 109.47228 * 180.44790 * 1 2 3 26 26 H 1.08998 * 109.47157 * 300.45061 * 1 2 3 27 27 H 1.08996 * 109.47353 * 239.99557 * 2 1 3 28 28 H 1.09000 * 109.47033 * 119.99648 * 2 1 3 29 29 H 0.96994 * 119.99837 * 180.02562 * 8 7 5 30 30 H 1.00903 * 111.00139 * 278.17285 * 13 3 2 31 31 H 1.09000 * 109.47315 * 65.20885 * 14 13 3 32 32 H 1.08998 * 109.47454 * 305.20064 * 14 13 3 33 33 H 1.08995 * 109.47329 * 60.00396 * 15 14 13 34 34 H 1.08992 * 109.47432 * 299.99729 * 15 14 13 35 35 H 1.09005 * 109.46211 * 305.85538 * 17 16 15 36 36 H 1.08997 * 109.46330 * 65.82660 * 17 16 15 37 37 H 1.09007 * 109.50347 * 60.75885 * 18 17 16 38 38 H 1.08998 * 109.50941 * 180.87635 * 18 17 16 39 39 H 1.09002 * 109.50929 * 182.40818 * 22 19 18 40 40 H 1.09005 * 109.53433 * 62.30884 * 22 19 18 41 41 H 1.08994 * 109.46130 * 294.17454 * 23 16 15 42 42 H 1.09004 * 109.46189 * 54.15561 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6068 1.9811 0.8429 5 6 3.5421 1.4442 0.1215 6 1 4.1461 1.8892 -0.6554 7 6 4.1452 0.8777 1.2243 8 7 3.4096 0.3354 2.1701 9 14 6.0071 0.8804 1.3752 10 1 6.5017 2.2805 1.3754 11 1 6.4021 0.2152 2.6427 12 1 6.5978 0.1470 0.2269 13 7 1.6494 2.1000 -1.2541 14 6 1.5528 3.5551 -1.0779 15 6 1.0203 4.1904 -2.3639 16 7 0.9231 5.6456 -2.1873 17 6 0.6443 6.3132 -3.4652 18 6 0.6943 7.8304 -3.2712 19 6 -0.3434 8.2404 -2.2226 20 9 -1.6244 7.9122 -2.6794 21 9 -0.2641 9.6194 -2.0006 22 6 -0.0595 7.4945 -0.9160 23 6 -0.0876 5.9870 -1.1783 24 1 -0.3633 0.5069 -0.8940 25 1 -0.3633 -1.0276 0.0080 26 1 -0.3633 0.5208 0.8859 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.8339 -0.0628 2.9461 30 1 2.2894 1.8677 -1.9988 31 1 2.5396 3.9603 -0.8541 32 1 0.8736 3.7771 -0.2548 33 1 0.0335 3.7853 -2.5877 34 1 1.6994 3.9685 -3.1870 35 1 1.3920 6.0164 -4.2008 36 1 -0.3460 6.0246 -3.8173 37 1 1.6886 8.1214 -2.9323 38 1 0.4720 8.3258 -4.2163 39 1 -0.8203 7.7497 -0.1783 40 1 0.9228 7.7801 -0.5393 41 1 -1.0744 5.6999 -1.5411 42 1 0.1286 5.4534 -0.2527 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255158862.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:51 Heat of formation + Delta-G solvation = -129.056713 kcal Electronic energy + Delta-G solvation = -22227.308062 eV Core-core repulsion = 18683.415628 eV Total energy + Delta-G solvation = -3543.892434 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 276.171 amu Computer time = 2.07 seconds Orbital eigenvalues (eV) -50.00162 -48.01648 -39.78633 -37.92885 -35.01823 -33.68225 -32.50987 -32.20226 -29.28246 -27.33095 -25.14991 -24.64465 -24.03229 -22.15507 -21.35761 -21.04598 -18.71830 -18.47568 -17.84756 -17.28346 -16.88755 -16.42224 -16.31007 -16.05596 -15.40029 -15.13996 -14.86983 -14.67029 -14.54990 -14.33149 -14.07697 -13.62966 -13.53845 -13.44530 -13.31442 -13.11609 -13.00871 -12.81287 -12.55381 -12.47094 -12.37662 -12.17933 -12.13271 -11.77370 -11.49561 -11.35743 -11.17187 -10.99012 -10.44360 -9.37016 -9.03871 -8.03784 -6.25883 1.41143 1.41630 1.49035 2.41768 2.66087 2.80541 3.09381 3.16502 3.34563 3.44659 3.80393 3.95901 4.10175 4.21810 4.26230 4.38843 4.50634 4.55177 4.60259 4.62734 4.71080 4.78187 4.83018 4.87725 4.90000 4.95132 5.03148 5.05621 5.20387 5.22257 5.43201 5.53429 5.64311 5.78215 5.97313 6.05382 6.13365 6.22027 6.39788 6.84067 7.03813 7.45686 8.92661 Molecular weight = 276.17amu Principal moments of inertia in cm(-1) A = 0.023426 B = 0.003753 C = 0.003491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.987086 B = 7458.490656 C = 8018.821186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.103 4.103 3 C 0.224 3.776 4 H -0.003 1.003 5 C -0.559 4.559 6 H 0.051 0.949 7 C 0.021 3.979 8 N -0.911 5.911 9 Si 0.949 3.051 10 H -0.276 1.276 11 H -0.285 1.285 12 H -0.271 1.271 13 N -0.681 5.681 14 C 0.077 3.923 15 C 0.076 3.924 16 N -0.546 5.546 17 C 0.057 3.943 18 C -0.147 4.147 19 C 0.280 3.720 20 F -0.212 7.212 21 F -0.210 7.210 22 C -0.150 4.150 23 C 0.054 3.946 24 H 0.058 0.942 25 H 0.044 0.956 26 H 0.028 0.972 27 H 0.029 0.971 28 H 0.060 0.940 29 H 0.262 0.738 30 H 0.331 0.669 31 H 0.015 0.985 32 H 0.050 0.950 33 H 0.041 0.959 34 H 0.083 0.917 35 H 0.104 0.896 36 H 0.041 0.959 37 H 0.110 0.890 38 H 0.106 0.894 39 H 0.098 0.902 40 H 0.108 0.892 41 H 0.040 0.960 42 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.532 13.348 -10.216 18.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.141 4.141 3 C 0.115 3.885 4 H 0.015 0.985 5 C -0.598 4.598 6 H 0.069 0.931 7 C -0.179 4.179 8 N -0.550 5.550 9 Si 0.775 3.225 10 H -0.201 1.201 11 H -0.210 1.210 12 H -0.196 1.196 13 N -0.310 5.310 14 C -0.053 4.053 15 C -0.052 4.052 16 N -0.272 5.272 17 C -0.071 4.071 18 C -0.186 4.186 19 C 0.244 3.756 20 F -0.193 7.193 21 F -0.191 7.191 22 C -0.189 4.189 23 C -0.074 4.074 24 H 0.077 0.923 25 H 0.063 0.937 26 H 0.048 0.952 27 H 0.048 0.952 28 H 0.078 0.922 29 H 0.071 0.929 30 H 0.147 0.853 31 H 0.033 0.967 32 H 0.068 0.932 33 H 0.059 0.941 34 H 0.101 0.899 35 H 0.122 0.878 36 H 0.059 0.941 37 H 0.128 0.872 38 H 0.125 0.875 39 H 0.117 0.883 40 H 0.126 0.874 41 H 0.059 0.941 42 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -6.791 13.347 -9.778 17.885 hybrid contribution 1.039 -0.067 0.367 1.104 sum -5.753 13.280 -9.411 17.263 Atomic orbital electron populations 1.21559 0.96487 0.99704 1.00468 1.21361 0.94329 0.98381 1.00067 1.18894 0.91585 0.91493 0.86553 0.98481 1.22146 0.94058 1.37990 1.05654 0.93098 1.25649 1.02025 0.94770 0.95500 1.69999 1.36467 1.38771 1.09805 0.85752 0.81146 0.78171 0.77391 1.20096 1.21025 1.19647 1.60756 1.54564 1.07209 1.08467 1.21662 0.98317 0.88399 0.96918 1.21854 1.00261 0.85469 0.97584 1.61890 1.47577 1.08864 1.08848 1.22085 1.01389 0.92258 0.91360 1.22584 0.99527 0.97221 0.99219 1.21429 0.80526 0.76339 0.97324 1.92971 1.43262 1.92374 1.90675 1.92987 1.96381 1.33780 1.95916 1.22573 1.06027 0.95068 0.95191 1.22063 0.93652 0.94599 0.97132 0.92302 0.93688 0.95245 0.95179 0.92177 0.92924 0.85259 0.96708 0.93180 0.94102 0.89906 0.87822 0.94079 0.87197 0.87523 0.88346 0.87401 0.94139 0.89749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.97 9.79 71.98 0.70 -4.26 16 2 C -0.10 -4.87 5.45 30.59 0.17 -4.70 16 3 C 0.22 10.95 1.98 44.17 0.09 11.04 16 4 H 0.00 -0.15 7.70 -2.38 -0.02 -0.17 16 5 C -0.56 -29.84 8.47 25.60 0.22 -29.62 16 6 H 0.05 2.67 7.73 -2.91 -0.02 2.65 16 7 C 0.02 1.12 5.29 84.65 0.45 1.57 16 8 N -0.91 -51.71 11.29 21.45 0.24 -51.47 16 9 Si 0.95 42.91 29.54 68.60 2.03 44.93 16 10 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 11 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 12 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 13 N -0.68 -27.11 5.68 -495.46 -2.81 -29.93 16 14 C 0.08 2.73 5.44 86.31 0.47 3.20 16 15 C 0.08 2.04 5.26 86.30 0.45 2.49 16 16 N -0.55 -12.83 4.66 -896.37 -4.17 -17.00 16 17 C 0.06 1.04 5.35 86.32 0.46 1.50 16 18 C -0.15 -2.41 5.62 30.65 0.17 -2.24 16 19 C 0.28 5.63 2.12 30.67 0.06 5.70 16 20 F -0.21 -4.92 16.22 44.97 0.73 -4.19 16 21 F -0.21 -4.64 17.07 44.97 0.77 -3.87 16 22 C -0.15 -2.96 5.62 30.64 0.17 -2.79 16 23 C 0.05 1.23 5.18 86.33 0.45 1.68 16 24 H 0.06 2.20 7.76 -2.39 -0.02 2.18 16 25 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 26 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 27 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 28 H 0.06 3.23 5.95 -2.39 -0.01 3.22 16 29 H 0.26 14.21 8.31 -92.71 -0.77 13.43 16 30 H 0.33 12.85 8.46 -89.69 -0.76 12.09 16 31 H 0.01 0.58 8.11 -2.39 -0.02 0.56 16 32 H 0.05 1.85 6.21 -2.39 -0.01 1.84 16 33 H 0.04 1.10 8.12 -2.39 -0.02 1.09 16 34 H 0.08 2.06 7.99 -2.39 -0.02 2.04 16 35 H 0.10 1.62 8.02 -2.38 -0.02 1.60 16 36 H 0.04 0.78 7.87 -2.39 -0.02 0.77 16 37 H 0.11 1.69 8.14 -2.38 -0.02 1.67 16 38 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 39 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 40 H 0.11 2.04 8.14 -2.38 -0.02 2.02 16 41 H 0.04 0.95 7.87 -2.39 -0.02 0.93 16 42 H 0.08 2.15 6.21 -2.38 -0.01 2.13 16 Total: -1.00 -58.34 334.66 0.88 -57.45 By element: Atomic # 1 Polarization: 20.27 SS G_CDS: 0.24 Total: 20.50 kcal Atomic # 6 Polarization: -20.30 SS G_CDS: 3.87 Total: -16.43 kcal Atomic # 7 Polarization: -91.66 SS G_CDS: -6.74 Total: -98.40 kcal Atomic # 9 Polarization: -9.55 SS G_CDS: 1.50 Total: -8.06 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 2.03 Total: 44.93 kcal Total: -58.34 0.88 -57.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255158862.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.602 kcal (2) G-P(sol) polarization free energy of solvation -58.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.07 seconds