Wall clock time and date at job start Mon Mar 30 2020 02:50:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.47444 * 2 1 4 4 H 1.08997 * 109.47727 * 177.50528 * 3 2 1 5 5 C 1.50705 * 109.46841 * 57.50791 * 3 2 1 6 6 H 1.08004 * 119.99966 * 244.17853 * 5 3 2 7 7 C 1.37876 * 119.99953 * 64.18252 * 5 3 2 8 8 N 1.31510 * 120.00251 * 9.66789 * 7 5 3 9 9 Si 1.86801 * 119.99675 * 189.66141 * 7 5 3 10 10 H 1.48505 * 109.46983 * 180.02562 * 9 7 5 11 11 H 1.48496 * 109.47738 * 299.99955 * 9 7 5 12 12 H 1.48504 * 109.47281 * 60.00506 * 9 7 5 13 13 N 1.46899 * 109.47162 * 297.51184 * 3 2 1 14 14 C 1.46904 * 110.99866 * 273.81388 * 13 3 2 15 15 C 1.52999 * 109.47440 * 185.16905 * 14 13 3 16 16 N 1.46899 * 109.47018 * 180.02562 * 15 14 13 17 17 C 1.46853 * 110.99740 * 170.00376 * 16 15 14 18 18 C 1.53037 * 109.52158 * 174.15970 * 17 16 15 19 19 C 1.53119 * 109.27887 * 59.17740 * 18 17 16 20 20 C 1.53116 * 109.15990 * 302.34532 * 19 18 17 21 21 F 1.39901 * 109.50460 * 177.59954 * 20 19 18 22 22 F 1.39907 * 109.50305 * 297.71152 * 20 19 18 23 23 C 1.46843 * 111.00316 * 45.79273 * 16 15 14 24 24 H 1.08997 * 109.47587 * 185.23657 * 1 2 3 25 25 H 1.09002 * 109.46853 * 305.23373 * 1 2 3 26 26 H 1.08998 * 109.47326 * 65.22987 * 1 2 3 27 27 H 1.09004 * 109.46848 * 240.00220 * 2 1 3 28 28 H 1.09004 * 109.47374 * 120.00112 * 2 1 3 29 29 H 0.97006 * 119.99669 * 356.94260 * 8 7 5 30 30 H 1.00899 * 111.00066 * 37.76670 * 13 3 2 31 31 H 1.09007 * 109.47209 * 305.17424 * 14 13 3 32 32 H 1.09002 * 109.46590 * 65.16644 * 14 13 3 33 33 H 1.09001 * 109.46926 * 300.00288 * 15 14 13 34 34 H 1.09005 * 109.46719 * 60.00212 * 15 14 13 35 35 H 1.08997 * 109.45913 * 294.17605 * 17 16 15 36 36 H 1.08997 * 109.46306 * 54.15243 * 17 16 15 37 37 H 1.08999 * 109.49979 * 179.11381 * 18 17 16 38 38 H 1.08999 * 109.50043 * 299.19527 * 18 17 16 39 39 H 1.09000 * 109.52661 * 62.24785 * 19 18 17 40 40 H 1.09004 * 109.52014 * 182.37436 * 19 18 17 41 41 H 1.08999 * 109.45883 * 305.85164 * 23 16 15 42 42 H 1.08994 * 109.46410 * 65.81639 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 3.1291 1.4428 0.0447 5 6 1.4879 2.1704 1.1985 6 1 0.8173 3.0059 1.0611 7 6 1.8388 1.7700 2.4703 8 7 2.7956 0.8838 2.6402 9 14 0.9554 2.4864 3.9521 10 1 1.5154 1.8972 5.1949 11 1 1.1421 3.9593 3.9755 12 1 -0.4934 2.1724 3.8641 13 7 1.6001 2.1174 -1.2284 14 6 2.5448 1.8782 -2.3276 15 6 2.1242 2.6980 -3.5491 16 7 3.0686 2.4583 -4.6485 17 6 2.5722 3.0362 -5.9040 18 6 3.6418 2.8961 -6.9895 19 6 3.9736 1.4140 -7.1840 20 6 4.4419 0.8246 -5.8507 21 9 4.6949 -0.5424 -6.0073 22 9 5.6115 1.4725 -5.4387 23 6 3.3492 1.0247 -4.7982 24 1 -0.3634 -1.0233 0.0938 25 1 -0.3633 0.5929 0.8394 26 1 -0.3634 0.4306 -0.9331 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 3.2240 0.4790 1.8697 30 1 0.6673 1.8304 -1.4844 31 1 3.5464 2.1762 -2.0173 32 1 2.5439 0.8186 -2.5833 33 1 1.1227 2.4000 -3.8593 34 1 2.1252 3.7576 -3.2933 35 1 1.6692 2.5102 -6.2138 36 1 2.3442 4.0913 -5.7530 37 1 3.2671 3.3110 -7.9252 38 1 4.5402 3.4341 -6.6867 39 1 3.0845 0.8833 -7.5246 40 1 4.7652 1.3124 -7.9264 41 1 3.6853 0.6189 -3.8440 42 1 2.4426 0.5082 -5.1131 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255158937.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:56 Heat of formation + Delta-G solvation = -106.395559 kcal Electronic energy + Delta-G solvation = -22551.467917 eV Core-core repulsion = 19008.558144 eV Total energy + Delta-G solvation = -3542.909772 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 276.171 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -48.99614 -46.98722 -39.00748 -36.82274 -34.23858 -32.32636 -30.73915 -30.43044 -27.88544 -25.62565 -24.26017 -23.58101 -23.08388 -21.11824 -20.25393 -19.59070 -17.57451 -17.04259 -16.75457 -16.46355 -15.67085 -15.25277 -14.95134 -14.44001 -14.06863 -13.84524 -13.68413 -13.47234 -13.39738 -13.31639 -13.07567 -12.93396 -12.71677 -12.48147 -12.20462 -11.72753 -11.46025 -11.26806 -11.16774 -11.06971 -10.99775 -10.75980 -10.47579 -10.20952 -10.06945 -10.03751 -9.90305 -8.69501 -8.53393 -8.19270 -7.34730 -6.29544 -3.97378 3.36104 3.46965 3.48038 3.66915 3.69699 3.92145 4.18497 4.28829 4.55212 4.63973 4.88361 5.00312 5.07671 5.15444 5.22441 5.29661 5.36879 5.40601 5.43581 5.46531 5.60798 5.67633 5.79846 5.88956 6.04734 6.10230 6.20501 6.23078 6.32989 6.62950 6.77696 6.88118 6.96600 7.02143 7.22090 7.27004 7.90365 8.27233 8.41697 8.66207 8.94025 9.70637 11.06913 Molecular weight = 276.17amu Principal moments of inertia in cm(-1) A = 0.029805 B = 0.003770 C = 0.003662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.209724 B = 7425.434997 C = 7644.621716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.151 4.151 3 C 0.206 3.794 4 H 0.025 0.975 5 C -0.572 4.572 6 H 0.055 0.945 7 C 0.018 3.982 8 N -0.914 5.914 9 Si 1.066 2.934 10 H -0.285 1.285 11 H -0.289 1.289 12 H -0.289 1.289 13 N -0.675 5.675 14 C 0.054 3.946 15 C 0.064 3.936 16 N -0.529 5.529 17 C 0.049 3.951 18 C -0.116 4.116 19 C -0.160 4.160 20 C 0.293 3.707 21 F -0.202 7.202 22 F -0.188 7.188 23 C 0.010 3.990 24 H 0.028 0.972 25 H 0.073 0.927 26 H 0.032 0.968 27 H 0.018 0.982 28 H 0.068 0.932 29 H 0.268 0.732 30 H 0.326 0.674 31 H 0.075 0.925 32 H 0.017 0.983 33 H 0.032 0.968 34 H 0.091 0.909 35 H 0.037 0.963 36 H 0.086 0.914 37 H 0.081 0.919 38 H 0.083 0.917 39 H 0.089 0.911 40 H 0.088 0.912 41 H 0.108 0.892 42 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.835 0.977 -19.897 19.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.191 4.191 3 C 0.097 3.903 4 H 0.043 0.957 5 C -0.611 4.611 6 H 0.074 0.926 7 C -0.186 4.186 8 N -0.551 5.551 9 Si 0.895 3.105 10 H -0.210 1.210 11 H -0.215 1.215 12 H -0.216 1.216 13 N -0.306 5.306 14 C -0.076 4.076 15 C -0.063 4.063 16 N -0.255 5.255 17 C -0.079 4.079 18 C -0.154 4.154 19 C -0.198 4.198 20 C 0.256 3.744 21 F -0.183 7.183 22 F -0.169 7.169 23 C -0.119 4.119 24 H 0.047 0.953 25 H 0.092 0.908 26 H 0.051 0.949 27 H 0.037 0.963 28 H 0.086 0.914 29 H 0.079 0.921 30 H 0.144 0.856 31 H 0.093 0.907 32 H 0.035 0.965 33 H 0.051 0.949 34 H 0.109 0.891 35 H 0.056 0.944 36 H 0.105 0.895 37 H 0.100 0.900 38 H 0.101 0.899 39 H 0.108 0.892 40 H 0.106 0.894 41 H 0.126 0.874 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -0.117 1.801 -17.922 18.013 hybrid contribution -0.737 -1.580 -2.141 2.761 sum -0.854 0.221 -20.063 20.083 Atomic orbital electron populations 1.21593 0.96788 0.99217 1.01297 1.22222 0.96085 1.01335 0.99454 1.19328 0.95248 0.88188 0.87520 0.95710 1.21803 1.31379 1.17123 0.90815 0.92622 1.25720 0.95800 0.96535 1.00546 1.70818 1.21434 1.28430 1.34437 0.83574 0.75497 0.75718 0.75702 1.21002 1.21514 1.21552 1.60654 1.03910 1.62829 1.03239 1.22086 0.98617 0.95612 0.91314 1.22136 0.92108 1.02428 0.89631 1.61842 1.46514 1.11580 1.05517 1.22218 0.95732 1.00925 0.89017 1.21577 1.00558 0.94380 0.98867 1.22584 1.03593 0.98397 0.95214 1.20979 0.83199 0.73980 0.96240 1.93005 1.95053 1.33696 1.96587 1.93025 1.50936 1.81130 1.91827 1.23100 0.97070 0.91619 1.00154 0.95261 0.90829 0.94935 0.96280 0.91352 0.92062 0.85557 0.90679 0.96468 0.94926 0.89056 0.94440 0.89528 0.90019 0.89856 0.89197 0.89362 0.87436 0.92070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.68 9.38 37.16 0.35 -2.33 16 2 C -0.15 -3.41 5.47 -26.74 -0.15 -3.56 16 3 C 0.21 5.01 1.96 -68.87 -0.13 4.87 16 4 H 0.03 0.68 7.10 -51.93 -0.37 0.31 16 5 C -0.57 -15.58 7.31 -34.44 -0.25 -15.84 16 6 H 0.06 1.55 7.83 -52.48 -0.41 1.14 16 7 C 0.02 0.49 5.21 -17.82 -0.09 0.40 16 8 N -0.91 -27.02 13.07 55.43 0.72 -26.29 16 9 Si 1.07 24.99 29.91 -169.99 -5.09 19.90 16 10 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 11 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 12 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 13 N -0.68 -13.92 6.21 -107.95 -0.67 -14.59 16 14 C 0.05 0.94 4.76 -3.82 -0.02 0.92 16 15 C 0.06 0.90 5.58 -3.83 -0.02 0.88 16 16 N -0.53 -6.66 4.74 -234.68 -1.11 -7.77 16 17 C 0.05 0.47 5.42 -3.83 -0.02 0.45 16 18 C -0.12 -0.95 5.96 -26.65 -0.16 -1.11 16 19 C -0.16 -1.39 5.52 -26.61 -0.15 -1.54 16 20 C 0.29 3.52 2.14 -26.65 -0.06 3.47 16 21 F -0.20 -2.65 17.07 2.25 0.04 -2.61 16 22 F -0.19 -2.69 16.60 2.25 0.04 -2.66 16 23 C 0.01 0.12 4.34 -3.84 -0.02 0.11 16 24 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.07 1.65 6.95 -51.93 -0.36 1.29 16 26 H 0.03 0.59 6.55 -51.93 -0.34 0.25 16 27 H 0.02 0.39 7.58 -51.93 -0.39 0.00 16 28 H 0.07 1.72 6.32 -51.93 -0.33 1.39 16 29 H 0.27 7.90 5.93 -40.82 -0.24 7.66 16 30 H 0.33 6.33 6.54 -39.29 -0.26 6.08 16 31 H 0.07 1.45 7.93 -51.93 -0.41 1.04 16 32 H 0.02 0.30 5.66 -51.93 -0.29 0.00 16 33 H 0.03 0.43 8.08 -51.93 -0.42 0.01 16 34 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 35 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.09 0.77 8.12 -51.93 -0.42 0.35 16 37 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.08 0.78 7.91 -51.93 -0.41 0.37 16 39 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.11 1.52 5.81 -51.93 -0.30 1.22 16 42 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 327.29 15.07 4.93 4.93 Total: -1.00 -29.50 327.29 -8.57 -38.06 By element: Atomic # 1 Polarization: 11.02 SS G_CDS: -6.72 Total: 4.30 kcal Atomic # 6 Polarization: -12.56 SS G_CDS: -0.72 Total: -13.28 kcal Atomic # 7 Polarization: -47.60 SS G_CDS: -1.06 Total: -48.66 kcal Atomic # 9 Polarization: -5.34 SS G_CDS: 0.08 Total: -5.26 kcal Atomic # 14 Polarization: 24.99 SS G_CDS: -5.09 Total: 19.90 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -29.50 -8.57 -38.06 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255158937.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.331 kcal (2) G-P(sol) polarization free energy of solvation -29.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds