Wall clock time and date at job start Mon Mar 30 2020 02:14:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47275 * 2 1 4 4 H 1.09006 * 109.47262 * 303.31079 * 3 2 1 5 5 C 1.50702 * 109.47326 * 183.31088 * 3 2 1 6 6 H 1.07996 * 120.00286 * 239.99812 * 5 3 2 7 7 C 1.37881 * 119.99970 * 60.00013 * 5 3 2 8 8 N 1.31518 * 119.99616 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 120.00149 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47246 * 89.99626 * 9 7 5 11 11 H 1.48499 * 109.47052 * 209.99982 * 9 7 5 12 12 H 1.48501 * 109.47031 * 329.99503 * 9 7 5 13 13 N 1.46903 * 109.47310 * 63.31242 * 3 2 1 14 14 C 1.46955 * 110.99999 * 66.09657 * 13 3 2 15 15 C 1.53046 * 109.36223 * 183.19182 * 14 13 3 16 16 N 1.46955 * 109.36436 * 301.59294 * 15 14 13 17 17 C 1.39004 * 111.00019 * 183.19153 * 16 15 14 18 18 C 1.39335 * 120.09341 * 180.02562 * 17 16 15 19 19 N 1.31920 * 119.88694 * 180.02562 * 18 17 16 20 20 C 1.32270 * 120.09003 * 0.02562 * 19 18 17 21 21 C 1.38156 * 120.19385 * 359.97438 * 20 19 18 22 22 N 1.32255 * 120.10556 * 359.97438 * 21 20 19 23 23 C 1.46955 * 110.87687 * 59.32568 * 16 15 14 24 24 C 1.46955 * 111.00208 * 189.89688 * 13 3 2 25 25 H 1.08995 * 109.47119 * 304.75944 * 1 2 3 26 26 H 1.09002 * 109.46984 * 64.75655 * 1 2 3 27 27 H 1.08993 * 109.47320 * 184.75563 * 1 2 3 28 28 H 1.08998 * 109.47235 * 240.00032 * 2 1 3 29 29 H 1.08999 * 109.47189 * 120.00082 * 2 1 3 30 30 H 0.96998 * 119.99820 * 179.97438 * 8 7 5 31 31 H 1.08993 * 109.49004 * 63.21867 * 14 13 3 32 32 H 1.09000 * 109.50422 * 303.16462 * 14 13 3 33 33 H 1.09002 * 109.48682 * 181.62733 * 15 14 13 34 34 H 1.09000 * 109.51315 * 61.57626 * 15 14 13 35 35 H 1.07994 * 120.05629 * 0.04572 * 18 17 16 36 36 H 1.08003 * 119.90344 * 179.97438 * 20 19 18 37 37 H 1.07996 * 119.94714 * 180.02562 * 21 20 19 38 38 H 1.09002 * 109.49243 * 60.64931 * 23 16 15 39 39 H 1.09003 * 109.48895 * 180.70951 * 23 16 15 40 40 H 1.09005 * 109.48699 * 296.77798 * 24 13 3 41 41 H 1.08999 * 109.49173 * 56.81683 * 24 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6290 1.9732 -0.8589 5 6 3.5448 1.4432 -0.0821 6 1 4.1284 1.8955 0.7061 7 6 4.1766 0.8666 -1.1635 8 7 3.4659 0.3154 -2.1231 9 14 6.0418 0.8669 -1.2649 10 1 6.5730 -0.3588 -0.6164 11 1 6.4600 0.8943 -2.6895 12 1 6.5751 2.0657 -0.5694 13 7 1.6168 2.1115 1.2374 14 6 2.2685 1.5114 2.4100 15 6 1.7423 2.1815 3.6813 16 7 2.0076 3.6255 3.6166 17 6 1.6071 4.2586 4.7875 18 6 1.7717 5.6349 4.9291 19 7 1.3907 6.2314 6.0423 20 6 0.8537 5.5248 7.0230 21 6 0.6887 4.1599 6.8864 22 7 1.0671 3.5541 5.7733 23 6 1.3559 4.2256 2.4440 24 6 1.8820 3.5555 1.1727 25 1 -0.3633 0.5859 0.8442 26 1 -0.3633 0.4383 -0.9296 27 1 -0.3633 -1.0240 0.0852 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.9103 -0.0899 -2.8840 31 1 3.3464 1.6573 2.3413 32 1 2.0473 0.4446 2.4430 33 1 2.2455 1.7580 4.5506 34 1 0.6687 2.0124 3.7645 35 1 2.2102 6.2123 4.1287 36 1 0.5431 6.0162 7.9332 37 1 0.2494 3.5869 7.6895 38 1 0.2779 4.0797 2.5127 39 1 1.5774 5.2924 2.4112 40 1 2.9557 3.7247 1.0900 41 1 1.3792 3.9790 0.3032 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255164963.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:26 Heat of formation + Delta-G solvation = 70.558574 kcal Electronic energy + Delta-G solvation = -21960.103003 eV Core-core repulsion = 18875.555724 eV Total energy + Delta-G solvation = -3084.547279 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.25541 -38.84499 -36.18554 -34.08655 -32.82078 -31.43799 -30.64040 -30.04256 -27.24729 -25.34682 -24.95913 -23.20408 -22.79493 -22.27832 -19.92299 -18.99646 -17.56926 -17.46129 -16.69555 -16.19697 -15.34861 -15.07141 -14.56928 -14.36630 -14.09593 -13.98565 -13.72583 -13.25065 -12.93649 -12.65571 -12.28794 -11.90748 -11.60091 -11.53887 -11.25938 -11.16746 -10.90212 -10.88173 -10.74237 -10.57708 -10.41910 -9.96472 -9.87322 -9.68720 -9.46646 -9.11108 -9.09267 -8.38892 -8.15793 -7.19906 -6.01757 -4.14752 0.78448 1.12602 3.25716 3.33344 3.36463 3.42109 3.73530 4.25609 4.27633 4.38071 4.54420 4.92266 5.00735 5.15452 5.23208 5.27447 5.40099 5.45983 5.67149 5.71643 5.94621 6.00129 6.08590 6.19228 6.32961 6.44704 6.51242 6.63917 6.67797 6.74444 6.79976 7.08052 7.08650 7.15026 7.31575 7.37907 7.56431 7.73843 7.80155 7.91042 8.11043 8.24142 8.41638 8.94659 9.53154 10.97883 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.025330 B = 0.004624 C = 0.004243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.155386 B = 6054.508947 C = 6597.249890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.110 4.110 3 C 0.215 3.785 4 H 0.039 0.961 5 C -0.544 4.544 6 H 0.058 0.942 7 C 0.069 3.931 8 N -0.885 5.885 9 Si 0.887 3.113 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.275 1.275 13 N -0.535 5.535 14 C 0.058 3.942 15 C 0.070 3.930 16 N -0.468 5.468 17 C 0.278 3.722 18 C 0.035 3.965 19 N -0.421 5.421 20 C -0.003 4.003 21 C 0.081 3.919 22 N -0.480 5.480 23 C 0.064 3.936 24 C 0.062 3.938 25 H 0.049 0.951 26 H 0.037 0.963 27 H 0.025 0.975 28 H 0.092 0.908 29 H 0.032 0.968 30 H 0.261 0.739 31 H 0.050 0.950 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.053 0.947 35 H 0.169 0.831 36 H 0.164 0.836 37 H 0.166 0.834 38 H 0.050 0.950 39 H 0.079 0.921 40 H 0.050 0.950 41 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.836 6.829 12.920 15.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.149 4.149 3 C 0.109 3.891 4 H 0.057 0.943 5 C -0.583 4.583 6 H 0.077 0.923 7 C -0.133 4.133 8 N -0.524 5.524 9 Si 0.715 3.285 10 H -0.207 1.207 11 H -0.212 1.212 12 H -0.200 1.200 13 N -0.260 5.260 14 C -0.071 4.071 15 C -0.057 4.057 16 N -0.185 5.185 17 C 0.042 3.958 18 C -0.131 4.131 19 N -0.135 5.135 20 C -0.161 4.161 21 C -0.080 4.080 22 N -0.201 5.201 23 C -0.061 4.061 24 C -0.067 4.067 25 H 0.068 0.932 26 H 0.057 0.943 27 H 0.044 0.956 28 H 0.110 0.890 29 H 0.051 0.949 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.098 0.902 33 H 0.097 0.903 34 H 0.071 0.929 35 H 0.186 0.814 36 H 0.182 0.818 37 H 0.183 0.817 38 H 0.069 0.931 39 H 0.097 0.903 40 H 0.069 0.931 41 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -5.817 6.691 12.647 15.445 hybrid contribution 1.342 -0.119 -0.025 1.348 sum -4.475 6.573 12.621 14.917 Atomic orbital electron populations 1.21721 0.98893 0.98534 1.00526 1.21590 0.92169 0.99095 1.01997 1.19264 0.92950 0.91130 0.85799 0.94329 1.21735 0.92634 1.37781 1.06159 0.92344 1.24896 0.97891 0.94984 0.95536 1.69873 1.34956 1.37799 1.09732 0.86682 0.86228 0.78436 0.77186 1.20709 1.21234 1.20027 1.62674 1.57109 1.01456 1.04770 1.22081 0.98040 0.98502 0.88434 1.22226 1.00459 0.83725 0.99293 1.59244 1.52566 1.06586 1.00066 1.21104 0.90464 0.91654 0.92553 1.23285 1.00926 0.91876 0.97062 1.68312 1.06197 1.39045 0.99901 1.23450 1.00718 0.92902 0.99076 1.23572 0.95592 0.93709 0.95108 1.68471 1.10279 1.39497 1.01837 1.22471 0.96784 0.98318 0.88570 1.21952 1.00121 0.90389 0.94232 0.93220 0.94345 0.95610 0.88958 0.94897 0.92887 0.93137 0.90228 0.90329 0.92881 0.81415 0.81849 0.81700 0.93137 0.90251 0.93139 0.90540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.75 9.85 37.16 0.37 -2.39 16 2 C -0.11 -2.52 5.12 -26.73 -0.14 -2.65 16 3 C 0.21 5.03 1.72 -68.86 -0.12 4.91 16 4 H 0.04 1.01 8.03 -51.93 -0.42 0.59 16 5 C -0.54 -13.98 7.17 -34.44 -0.25 -14.23 16 6 H 0.06 1.53 5.80 -52.49 -0.30 1.22 16 7 C 0.07 1.84 5.30 -17.82 -0.09 1.75 16 8 N -0.89 -24.26 11.30 55.43 0.63 -23.63 16 9 Si 0.89 20.78 29.54 -169.99 -5.02 15.76 16 10 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 12 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 13 N -0.54 -10.63 3.96 -227.89 -0.90 -11.54 16 14 C 0.06 1.10 4.96 -3.77 -0.02 1.08 16 15 C 0.07 1.15 4.80 -3.77 -0.02 1.13 16 16 N -0.47 -7.29 4.74 -172.91 -0.82 -8.11 16 17 C 0.28 4.02 6.40 -154.73 -0.99 3.03 16 18 C 0.03 0.45 10.38 -17.11 -0.18 0.27 16 19 N -0.42 -5.35 10.49 -12.88 -0.14 -5.49 16 20 C 0.00 -0.03 11.21 -17.39 -0.19 -0.22 16 21 C 0.08 0.86 11.21 -17.40 -0.20 0.67 16 22 N -0.48 -6.73 8.89 -12.24 -0.11 -6.84 16 23 C 0.06 0.95 5.37 -3.77 -0.02 0.93 16 24 C 0.06 1.11 5.37 -3.77 -0.02 1.09 16 25 H 0.05 0.95 7.57 -51.93 -0.39 0.56 16 26 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 27 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.09 2.38 5.99 -51.93 -0.31 2.07 16 29 H 0.03 0.74 6.35 -51.93 -0.33 0.41 16 30 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 31 H 0.05 1.07 6.25 -51.93 -0.32 0.74 16 32 H 0.08 1.54 6.27 -51.93 -0.33 1.21 16 33 H 0.08 1.27 7.84 -51.93 -0.41 0.86 16 34 H 0.05 0.89 8.06 -51.93 -0.42 0.48 16 35 H 0.17 1.90 7.18 -52.49 -0.38 1.53 16 36 H 0.16 1.11 8.06 -52.48 -0.42 0.69 16 37 H 0.17 1.17 8.06 -52.49 -0.42 0.75 16 38 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 39 H 0.08 0.98 6.81 -51.93 -0.35 0.62 16 40 H 0.05 1.00 7.22 -51.93 -0.37 0.63 16 41 H 0.08 1.33 8.07 -51.93 -0.42 0.91 16 LS Contribution 319.37 15.07 4.81 4.81 Total: -1.00 -28.29 319.37 -9.42 -37.71 By element: Atomic # 1 Polarization: 7.97 SS G_CDS: -6.00 Total: 1.96 kcal Atomic # 6 Polarization: -2.77 SS G_CDS: -1.87 Total: -4.63 kcal Atomic # 7 Polarization: -54.27 SS G_CDS: -1.34 Total: -55.61 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -28.29 -9.42 -37.71 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255164963.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.268 kcal (2) G-P(sol) polarization free energy of solvation -28.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.710 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds