Wall clock time and date at job start Mon Mar 30 2020 02:14:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47275 * 2 1 4 4 H 1.09006 * 109.47262 * 303.31079 * 3 2 1 5 5 C 1.50702 * 109.47326 * 183.31088 * 3 2 1 6 6 H 1.07996 * 120.00286 * 239.99812 * 5 3 2 7 7 C 1.37881 * 119.99970 * 60.00013 * 5 3 2 8 8 N 1.31518 * 119.99616 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 120.00149 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47246 * 89.99626 * 9 7 5 11 11 H 1.48499 * 109.47052 * 209.99982 * 9 7 5 12 12 H 1.48501 * 109.47031 * 329.99503 * 9 7 5 13 13 N 1.46903 * 109.47310 * 63.31242 * 3 2 1 14 14 C 1.46955 * 110.99999 * 66.09657 * 13 3 2 15 15 C 1.53046 * 109.36223 * 183.19182 * 14 13 3 16 16 N 1.46955 * 109.36436 * 301.59294 * 15 14 13 17 17 C 1.39004 * 111.00019 * 183.19153 * 16 15 14 18 18 C 1.39335 * 120.09341 * 180.02562 * 17 16 15 19 19 N 1.31920 * 119.88694 * 180.02562 * 18 17 16 20 20 C 1.32270 * 120.09003 * 0.02562 * 19 18 17 21 21 C 1.38156 * 120.19385 * 359.97438 * 20 19 18 22 22 N 1.32255 * 120.10556 * 359.97438 * 21 20 19 23 23 C 1.46955 * 110.87687 * 59.32568 * 16 15 14 24 24 C 1.46955 * 111.00208 * 189.89688 * 13 3 2 25 25 H 1.08995 * 109.47119 * 304.75944 * 1 2 3 26 26 H 1.09002 * 109.46984 * 64.75655 * 1 2 3 27 27 H 1.08993 * 109.47320 * 184.75563 * 1 2 3 28 28 H 1.08998 * 109.47235 * 240.00032 * 2 1 3 29 29 H 1.08999 * 109.47189 * 120.00082 * 2 1 3 30 30 H 0.96998 * 119.99820 * 179.97438 * 8 7 5 31 31 H 1.08993 * 109.49004 * 63.21867 * 14 13 3 32 32 H 1.09000 * 109.50422 * 303.16462 * 14 13 3 33 33 H 1.09002 * 109.48682 * 181.62733 * 15 14 13 34 34 H 1.09000 * 109.51315 * 61.57626 * 15 14 13 35 35 H 1.07994 * 120.05629 * 0.04572 * 18 17 16 36 36 H 1.08003 * 119.90344 * 179.97438 * 20 19 18 37 37 H 1.07996 * 119.94714 * 180.02562 * 21 20 19 38 38 H 1.09002 * 109.49243 * 60.64931 * 23 16 15 39 39 H 1.09003 * 109.48895 * 180.70951 * 23 16 15 40 40 H 1.09005 * 109.48699 * 296.77798 * 24 13 3 41 41 H 1.08999 * 109.49173 * 56.81683 * 24 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6290 1.9732 -0.8589 5 6 3.5448 1.4432 -0.0821 6 1 4.1284 1.8955 0.7061 7 6 4.1766 0.8666 -1.1635 8 7 3.4659 0.3154 -2.1231 9 14 6.0418 0.8669 -1.2649 10 1 6.5730 -0.3588 -0.6164 11 1 6.4600 0.8943 -2.6895 12 1 6.5751 2.0657 -0.5694 13 7 1.6168 2.1115 1.2374 14 6 2.2685 1.5114 2.4100 15 6 1.7423 2.1815 3.6813 16 7 2.0076 3.6255 3.6166 17 6 1.6071 4.2586 4.7875 18 6 1.7717 5.6349 4.9291 19 7 1.3907 6.2314 6.0423 20 6 0.8537 5.5248 7.0230 21 6 0.6887 4.1599 6.8864 22 7 1.0671 3.5541 5.7733 23 6 1.3559 4.2256 2.4440 24 6 1.8820 3.5555 1.1727 25 1 -0.3633 0.5859 0.8442 26 1 -0.3633 0.4383 -0.9296 27 1 -0.3633 -1.0240 0.0852 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.9103 -0.0899 -2.8840 31 1 3.3464 1.6573 2.3413 32 1 2.0473 0.4446 2.4430 33 1 2.2455 1.7580 4.5506 34 1 0.6687 2.0124 3.7645 35 1 2.2102 6.2123 4.1287 36 1 0.5431 6.0162 7.9332 37 1 0.2494 3.5869 7.6895 38 1 0.2779 4.0797 2.5127 39 1 1.5774 5.2924 2.4112 40 1 2.9557 3.7247 1.0900 41 1 1.3792 3.9790 0.3032 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255164963.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:25 Heat of formation + Delta-G solvation = 52.037287 kcal Electronic energy + Delta-G solvation = -21960.906146 eV Core-core repulsion = 18875.555724 eV Total energy + Delta-G solvation = -3085.350422 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.24068 -40.21195 -37.67404 -35.17512 -34.46064 -33.17140 -31.99268 -31.23194 -28.88759 -26.93883 -26.01947 -24.74456 -24.02811 -23.65693 -21.48480 -20.68462 -18.75451 -18.48613 -18.06437 -17.54225 -16.95674 -16.32497 -16.02903 -15.67374 -15.40893 -15.31927 -15.16882 -14.87259 -14.30778 -13.91645 -13.77900 -13.43685 -13.24813 -12.99492 -12.75012 -12.59946 -12.52994 -12.31243 -12.22740 -12.17021 -12.00372 -11.64959 -11.53968 -11.20227 -11.08119 -10.88701 -10.41885 -10.04675 -9.22641 -8.94415 -8.02577 -6.23671 -0.11486 0.19260 1.37056 1.40051 1.47895 2.36993 2.41094 2.79876 3.16650 3.33292 3.35194 3.44859 3.60293 3.95143 4.13100 4.18915 4.33520 4.39483 4.41231 4.47941 4.59114 4.63548 4.69725 4.76803 4.82010 4.91801 5.02159 5.09316 5.16976 5.26718 5.32581 5.44184 5.48915 5.59791 5.65405 5.80452 5.95572 6.08355 6.18843 6.38556 6.43659 6.62385 6.87870 6.96060 7.46923 8.92924 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.025330 B = 0.004624 C = 0.004243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.155386 B = 6054.508947 C = 6597.249890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.105 4.105 3 C 0.221 3.779 4 H 0.009 0.991 5 C -0.549 4.549 6 H 0.049 0.951 7 C 0.025 3.975 8 N -0.910 5.910 9 Si 0.942 3.058 10 H -0.279 1.279 11 H -0.283 1.283 12 H -0.275 1.275 13 N -0.531 5.531 14 C 0.066 3.934 15 C 0.088 3.912 16 N -0.480 5.480 17 C 0.256 3.744 18 C 0.029 3.971 19 N -0.438 5.438 20 C 0.011 3.989 21 C 0.081 3.919 22 N -0.503 5.503 23 C 0.076 3.924 24 C 0.063 3.937 25 H 0.056 0.944 26 H 0.033 0.967 27 H 0.044 0.956 28 H 0.062 0.938 29 H 0.030 0.970 30 H 0.261 0.739 31 H 0.025 0.975 32 H 0.073 0.927 33 H 0.081 0.919 34 H 0.051 0.949 35 H 0.178 0.822 36 H 0.203 0.797 37 H 0.203 0.797 38 H 0.051 0.949 39 H 0.107 0.893 40 H 0.027 0.973 41 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.559 7.818 15.258 18.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.144 4.144 3 C 0.114 3.886 4 H 0.027 0.973 5 C -0.588 4.588 6 H 0.067 0.933 7 C -0.175 4.175 8 N -0.549 5.549 9 Si 0.769 3.231 10 H -0.205 1.205 11 H -0.209 1.209 12 H -0.200 1.200 13 N -0.255 5.255 14 C -0.063 4.063 15 C -0.039 4.039 16 N -0.197 5.197 17 C 0.022 3.978 18 C -0.135 4.135 19 N -0.153 5.153 20 C -0.149 4.149 21 C -0.080 4.080 22 N -0.224 5.224 23 C -0.050 4.050 24 C -0.066 4.066 25 H 0.075 0.925 26 H 0.052 0.948 27 H 0.064 0.936 28 H 0.081 0.919 29 H 0.049 0.951 30 H 0.070 0.930 31 H 0.043 0.957 32 H 0.091 0.909 33 H 0.100 0.900 34 H 0.069 0.931 35 H 0.195 0.805 36 H 0.220 0.780 37 H 0.220 0.780 38 H 0.069 0.931 39 H 0.125 0.875 40 H 0.045 0.955 41 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -6.534 7.700 14.985 18.070 hybrid contribution 1.506 -0.369 -0.598 1.662 sum -5.028 7.330 14.388 16.912 Atomic orbital electron populations 1.21572 0.96302 0.99915 1.00578 1.21431 0.94430 0.98175 1.00320 1.19030 0.91613 0.91526 0.86427 0.97348 1.21951 0.93982 1.37132 1.05716 0.93258 1.25538 1.01492 0.94999 0.95468 1.69991 1.36223 1.38548 1.10131 0.85806 0.81948 0.78254 0.77093 1.20457 1.20910 1.19998 1.62620 1.56720 1.02492 1.03640 1.21992 0.96439 0.98526 0.89369 1.21928 0.99923 0.84628 0.97450 1.59237 1.53629 1.05862 1.00979 1.21030 0.92248 0.92204 0.92295 1.23389 1.01040 0.91363 0.97739 1.68388 1.06949 1.39579 1.00339 1.24145 0.98333 0.92967 0.99436 1.24224 0.94571 0.94370 0.94819 1.68429 1.10712 1.40449 1.02762 1.22354 0.96454 0.99322 0.86829 1.21975 0.98878 0.89333 0.96447 0.92469 0.94769 0.93648 0.91945 0.95118 0.92970 0.95722 0.90887 0.90049 0.93114 0.80485 0.77993 0.78037 0.93065 0.87517 0.95458 0.90384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.94 9.85 71.98 0.71 -4.23 16 2 C -0.11 -4.90 5.12 30.59 0.16 -4.74 16 3 C 0.22 10.69 1.72 44.17 0.08 10.76 16 4 H 0.01 0.47 8.03 -2.38 -0.02 0.45 16 5 C -0.55 -29.05 7.17 25.60 0.18 -28.87 16 6 H 0.05 2.66 5.80 -2.91 -0.02 2.65 16 7 C 0.03 1.35 5.30 84.66 0.45 1.80 16 8 N -0.91 -51.09 11.30 21.45 0.24 -50.85 16 9 Si 0.94 43.37 29.54 68.60 2.03 45.40 16 10 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 11 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 12 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 13 N -0.53 -21.44 3.96 -874.89 -3.46 -24.91 16 14 C 0.07 2.52 4.96 86.31 0.43 2.95 16 15 C 0.09 2.85 4.80 86.31 0.41 3.26 16 16 N -0.48 -14.59 4.74 -700.97 -3.32 -17.91 16 17 C 0.26 7.00 6.40 133.04 0.85 7.85 16 18 C 0.03 0.70 10.38 84.94 0.88 1.58 16 19 N -0.44 -9.95 10.49 -194.68 -2.04 -11.99 16 20 C 0.01 0.18 11.21 84.61 0.95 1.13 16 21 C 0.08 1.45 11.21 84.61 0.95 2.40 16 22 N -0.50 -12.98 8.89 -192.64 -1.71 -14.69 16 23 C 0.08 2.17 5.37 86.31 0.46 2.64 16 24 C 0.06 2.27 5.37 86.31 0.46 2.73 16 25 H 0.06 2.13 7.57 -2.39 -0.02 2.12 16 26 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 27 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 28 H 0.06 3.31 5.99 -2.39 -0.01 3.29 16 29 H 0.03 1.41 6.35 -2.39 -0.02 1.39 16 30 H 0.26 14.05 8.31 -92.71 -0.77 13.28 16 31 H 0.02 1.07 6.25 -2.39 -0.01 1.06 16 32 H 0.07 2.87 6.27 -2.39 -0.01 2.85 16 33 H 0.08 2.58 7.84 -2.39 -0.02 2.56 16 34 H 0.05 1.66 8.06 -2.39 -0.02 1.64 16 35 H 0.18 3.73 7.18 -2.91 -0.02 3.71 16 36 H 0.20 1.71 8.06 -2.91 -0.02 1.69 16 37 H 0.20 1.94 8.06 -2.91 -0.02 1.92 16 38 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 39 H 0.11 2.46 6.81 -2.39 -0.02 2.44 16 40 H 0.03 1.11 7.22 -2.38 -0.02 1.09 16 41 H 0.08 2.76 8.07 -2.39 -0.02 2.74 16 Total: -1.00 -62.11 319.37 -0.28 -62.39 By element: Atomic # 1 Polarization: 12.28 SS G_CDS: 1.02 Total: 13.30 kcal Atomic # 6 Polarization: -7.71 SS G_CDS: 6.97 Total: -0.73 kcal Atomic # 7 Polarization: -110.06 SS G_CDS: -10.30 Total: -120.36 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 2.03 Total: 45.40 kcal Total: -62.11 -0.28 -62.39 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255164963.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.430 kcal (2) G-P(sol) polarization free energy of solvation -62.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.393 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds