Wall clock time and date at job start Mon Mar 30 2020 02:14:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47229 * 2 1 4 4 H 1.08996 * 109.47399 * 55.33826 * 3 2 1 5 5 C 1.50703 * 109.46926 * 175.34198 * 3 2 1 6 6 H 1.08002 * 119.99724 * 114.56053 * 5 3 2 7 7 C 1.37872 * 119.99914 * 294.55572 * 5 3 2 8 8 N 1.31509 * 120.00270 * 350.60448 * 7 5 3 9 9 Si 1.86798 * 119.99879 * 170.60192 * 7 5 3 10 10 H 1.48499 * 109.47129 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.47196 * 120.00112 * 9 7 5 12 12 H 1.48498 * 109.47041 * 240.00026 * 9 7 5 13 13 N 1.46505 * 109.46799 * 295.33829 * 3 2 1 14 14 C 1.36211 * 120.13616 * 299.99699 * 13 3 2 15 15 C 1.35714 * 119.25718 * 180.02562 * 14 13 3 16 16 C 1.40063 * 119.52273 * 0.02562 * 15 14 13 17 17 C 1.50701 * 119.87465 * 180.02562 * 16 15 14 18 18 H 1.08998 * 109.87997 * 356.31749 * 17 16 15 19 19 C 1.54320 * 109.88923 * 235.29297 * 17 16 15 20 20 C 1.55393 * 102.89995 * 218.40742 * 19 17 16 21 21 C 1.54906 * 101.74558 * 35.48042 * 20 19 17 22 22 N 1.47436 * 109.89140 * 117.35345 * 17 16 15 23 23 N 1.31387 * 120.24958 * 0.02562 * 16 15 14 24 24 C 1.34336 * 120.77525 * 359.97438 * 23 16 15 25 25 N 1.31435 * 119.76931 * 180.02562 * 24 23 16 26 26 H 1.08994 * 109.46822 * 305.13297 * 1 2 3 27 27 H 1.09003 * 109.47185 * 65.13302 * 1 2 3 28 28 H 1.08996 * 109.47255 * 185.13101 * 1 2 3 29 29 H 1.09003 * 109.47273 * 239.99980 * 2 1 3 30 30 H 1.09003 * 109.47374 * 120.00092 * 2 1 3 31 31 H 0.96998 * 120.00728 * 180.02562 * 8 7 5 32 32 H 1.07998 * 120.37369 * 359.75503 * 14 13 3 33 33 H 1.07999 * 120.24329 * 179.97438 * 15 14 13 34 34 H 1.09001 * 110.70283 * 336.69140 * 19 17 16 35 35 H 1.09001 * 110.71008 * 99.92408 * 19 17 16 36 36 H 1.08998 * 110.87033 * 277.38635 * 20 19 17 37 37 H 1.09001 * 111.02314 * 153.63252 * 20 19 17 38 38 H 1.08991 * 110.37326 * 204.19451 * 21 20 19 39 39 H 1.08997 * 110.37764 * 81.84187 * 21 20 19 40 40 H 1.00901 * 110.99841 * 356.15012 * 22 17 16 41 41 H 0.97006 * 120.00226 * 359.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6101 1.9799 0.8452 5 6 3.5426 1.4440 0.1154 6 1 4.1465 1.8101 -0.7017 7 6 4.1462 0.9780 1.2640 8 7 3.4188 0.7064 2.3254 9 14 5.9974 0.7324 1.3127 10 1 6.5812 1.1080 -0.0001 11 1 6.5824 1.5873 2.3768 12 1 6.3002 -0.6926 1.6001 13 7 1.6454 2.0999 -1.2484 14 6 2.0663 1.6039 -2.4452 15 6 1.6906 2.2273 -3.5906 16 6 0.8793 3.3670 -3.5220 17 6 0.4569 4.0651 -4.7889 18 1 0.9253 3.5871 -5.6493 19 6 0.8633 5.5526 -4.7292 20 6 -0.3412 6.2685 -5.4012 21 6 -1.5310 5.3986 -4.9246 22 7 -1.0104 4.0147 -4.9242 23 7 0.4852 3.8297 -2.3571 24 6 0.8505 3.2213 -1.2165 25 7 0.4444 3.7008 -0.0621 26 1 -0.3633 0.5914 0.8404 27 1 -0.3634 0.4322 -0.9324 28 1 -0.3633 -1.0235 0.0919 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 3.8435 0.3789 3.1337 32 1 2.6955 0.7269 -2.4819 33 1 2.0154 1.8479 -4.5481 34 1 0.9777 5.8796 -3.6957 35 1 1.7803 5.7246 -5.2927 36 1 -0.2504 6.2449 -6.4871 37 1 -0.4377 7.2929 -5.0412 38 1 -2.3681 5.4888 -5.6166 39 1 -1.8353 5.6897 -3.9193 40 1 -1.4237 3.4731 -4.1799 41 1 -0.1168 4.4916 -0.0357 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255172683.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:04 Heat of formation + Delta-G solvation = 62.869361 kcal Electronic energy + Delta-G solvation = -21937.597264 eV Core-core repulsion = 18852.716555 eV Total energy + Delta-G solvation = -3084.880708 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.58343 -38.49025 -35.71001 -33.63539 -32.90208 -31.55098 -30.15970 -29.22060 -28.97694 -26.98900 -24.31446 -23.28464 -22.11342 -21.10795 -20.72713 -19.94497 -17.61000 -16.94680 -16.75392 -15.93473 -15.57892 -15.19698 -14.66868 -14.42165 -13.78555 -13.51236 -13.26575 -13.18092 -12.99977 -12.66120 -12.37459 -11.96736 -11.73795 -11.60568 -11.41910 -11.18467 -11.15651 -10.95911 -10.76873 -10.58150 -10.39617 -10.15851 -10.10602 -9.97119 -9.36880 -9.14539 -8.80364 -8.52274 -8.38479 -6.86922 -6.27083 -4.35711 1.34085 2.33747 3.15982 3.24647 3.26588 3.43984 4.15073 4.24916 4.34183 4.53562 4.69348 4.79961 4.96741 5.04283 5.16029 5.36226 5.47622 5.56373 5.70167 5.76648 5.81614 5.90631 5.96259 5.98270 6.01115 6.19122 6.21283 6.30887 6.34262 6.57650 6.62381 6.80745 6.83840 6.86470 7.10833 7.29676 7.34937 7.54966 7.80254 7.83389 7.94445 8.51373 8.65673 9.22449 9.30500 10.78804 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.026185 B = 0.004820 C = 0.004537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.065318 B = 5807.456221 C = 6170.188504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.122 4.122 3 C 0.248 3.752 4 H 0.099 0.901 5 C -0.544 4.544 6 H 0.061 0.939 7 C 0.074 3.926 8 N -0.875 5.875 9 Si 0.899 3.101 10 H -0.272 1.272 11 H -0.282 1.282 12 H -0.280 1.280 13 N -0.460 5.460 14 C 0.229 3.771 15 C -0.342 4.342 16 C 0.237 3.763 17 C 0.125 3.875 18 H 0.100 0.900 19 C -0.132 4.132 20 C -0.126 4.126 21 C 0.046 3.954 22 N -0.667 5.667 23 N -0.573 5.573 24 C 0.534 3.466 25 N -0.764 5.764 26 H 0.053 0.947 27 H 0.032 0.968 28 H 0.039 0.961 29 H 0.040 0.960 30 H 0.093 0.907 31 H 0.267 0.733 32 H 0.168 0.832 33 H 0.140 0.860 34 H 0.080 0.920 35 H 0.074 0.926 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.076 0.924 39 H 0.046 0.954 40 H 0.344 0.656 41 H 0.337 0.663 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.851 3.409 -13.799 15.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.161 4.161 3 C 0.148 3.852 4 H 0.117 0.883 5 C -0.582 4.582 6 H 0.080 0.920 7 C -0.131 4.131 8 N -0.511 5.511 9 Si 0.726 3.274 10 H -0.196 1.196 11 H -0.208 1.208 12 H -0.206 1.206 13 N -0.151 5.151 14 C 0.085 3.915 15 C -0.373 4.373 16 C 0.067 3.933 17 C 0.014 3.986 18 H 0.118 0.882 19 C -0.171 4.171 20 C -0.165 4.165 21 C -0.083 4.083 22 N -0.297 5.297 23 N -0.297 5.297 24 C 0.167 3.833 25 N -0.402 5.402 26 H 0.072 0.928 27 H 0.051 0.949 28 H 0.058 0.942 29 H 0.059 0.941 30 H 0.111 0.889 31 H 0.076 0.924 32 H 0.185 0.815 33 H 0.158 0.842 34 H 0.099 0.901 35 H 0.092 0.908 36 H 0.091 0.909 37 H 0.090 0.910 38 H 0.094 0.906 39 H 0.065 0.935 40 H 0.161 0.839 41 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -5.248 3.661 -12.696 14.217 hybrid contribution 1.307 -0.060 0.337 1.351 sum -3.941 3.601 -12.359 13.462 Atomic orbital electron populations 1.21772 0.98095 0.99754 1.00607 1.21937 0.93009 0.98836 1.02324 1.19713 0.95680 0.89495 0.80340 0.88340 1.21266 0.89734 1.44695 1.02477 0.92043 1.24862 0.98703 0.94795 0.94722 1.69971 1.35884 1.43099 1.02135 0.86431 0.84645 0.78025 0.78344 1.19620 1.20785 1.20571 1.45377 1.38384 1.22420 1.08946 1.22392 0.89485 0.95325 0.84326 1.20909 1.14064 1.03707 0.98661 1.22131 0.87516 0.89738 0.93893 1.21343 0.89388 0.95332 0.92505 0.88196 1.22898 0.98431 0.93400 1.02327 1.22714 0.94435 0.98735 1.00572 1.22823 0.97480 0.87990 1.00048 1.62267 1.03214 1.13042 1.51152 1.69565 1.29592 1.32869 0.97722 1.20031 0.89021 0.85410 0.88874 1.70181 1.27091 1.22691 1.20237 0.92776 0.94904 0.94230 0.94135 0.88890 0.92358 0.81464 0.84223 0.90114 0.90757 0.90889 0.90963 0.90571 0.93548 0.83882 0.84738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.84 9.74 37.16 0.36 -2.48 16 2 C -0.12 -2.64 5.22 -26.73 -0.14 -2.78 16 3 C 0.25 5.91 1.90 -69.08 -0.13 5.78 16 4 H 0.10 2.76 6.74 -51.93 -0.35 2.41 16 5 C -0.54 -13.91 8.28 -34.44 -0.29 -14.19 16 6 H 0.06 1.57 7.53 -52.49 -0.40 1.17 16 7 C 0.07 1.92 5.16 -17.82 -0.09 1.83 16 8 N -0.87 -23.71 12.16 55.43 0.67 -23.04 16 9 Si 0.90 20.06 29.55 -169.99 -5.02 15.04 16 10 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 11 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 12 H -0.28 -6.14 7.11 56.52 0.40 -5.73 16 13 N -0.46 -9.72 2.14 -112.39 -0.24 -9.96 16 14 C 0.23 4.00 9.01 -16.51 -0.15 3.85 16 15 C -0.34 -5.14 9.67 -39.80 -0.38 -5.53 16 16 C 0.24 3.73 5.33 -82.10 -0.44 3.29 16 17 C 0.12 1.57 3.81 -67.88 -0.26 1.32 16 18 H 0.10 1.12 7.93 -51.93 -0.41 0.70 16 19 C -0.13 -1.55 6.45 -24.77 -0.16 -1.71 16 20 C -0.13 -1.26 7.08 -24.46 -0.17 -1.43 16 21 C 0.05 0.50 7.58 -2.29 -0.02 0.49 16 22 N -0.67 -8.32 7.37 -105.03 -0.77 -9.09 16 23 N -0.57 -10.72 9.68 -10.02 -0.10 -10.82 16 24 C 0.53 11.59 8.43 -323.05 -2.72 8.87 16 25 N -0.76 -17.68 12.62 29.72 0.37 -17.31 16 26 H 0.05 1.14 8.14 -51.93 -0.42 0.71 16 27 H 0.03 0.63 7.89 -51.93 -0.41 0.22 16 28 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.04 0.79 7.14 -51.93 -0.37 0.42 16 30 H 0.09 2.22 6.80 -51.93 -0.35 1.87 16 31 H 0.27 6.85 8.31 -40.82 -0.34 6.52 16 32 H 0.17 2.59 7.45 -52.49 -0.39 2.20 16 33 H 0.14 1.63 7.99 -52.49 -0.42 1.21 16 34 H 0.08 1.15 7.37 -51.93 -0.38 0.77 16 35 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 36 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 39 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.34 4.72 8.18 -39.29 -0.32 4.40 16 41 H 0.34 7.20 8.90 -40.82 -0.36 6.84 16 LS Contribution 331.69 15.07 5.00 5.00 Total: -1.00 -28.31 331.69 -10.94 -39.25 By element: Atomic # 1 Polarization: 19.89 SS G_CDS: -6.26 Total: 13.63 kcal Atomic # 6 Polarization: 1.89 SS G_CDS: -4.59 Total: -2.70 kcal Atomic # 7 Polarization: -70.16 SS G_CDS: -0.06 Total: -70.22 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -5.02 Total: 15.04 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -28.31 -10.94 -39.25 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255172683.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.121 kcal (2) G-P(sol) polarization free energy of solvation -28.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.252 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds