Wall clock time and date at job start Mon Mar 30 2020 02:14:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47229 * 2 1 4 4 H 1.08996 * 109.47399 * 55.33826 * 3 2 1 5 5 C 1.50703 * 109.46926 * 175.34198 * 3 2 1 6 6 H 1.08002 * 119.99724 * 114.56053 * 5 3 2 7 7 C 1.37872 * 119.99914 * 294.55572 * 5 3 2 8 8 N 1.31509 * 120.00270 * 350.60448 * 7 5 3 9 9 Si 1.86798 * 119.99879 * 170.60192 * 7 5 3 10 10 H 1.48499 * 109.47129 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.47196 * 120.00112 * 9 7 5 12 12 H 1.48498 * 109.47041 * 240.00026 * 9 7 5 13 13 N 1.46505 * 109.46799 * 295.33829 * 3 2 1 14 14 C 1.36211 * 120.13616 * 299.99699 * 13 3 2 15 15 C 1.35714 * 119.25718 * 180.02562 * 14 13 3 16 16 C 1.40063 * 119.52273 * 0.02562 * 15 14 13 17 17 C 1.50701 * 119.87465 * 180.02562 * 16 15 14 18 18 H 1.08998 * 109.87997 * 356.31749 * 17 16 15 19 19 C 1.54320 * 109.88923 * 235.29297 * 17 16 15 20 20 C 1.55393 * 102.89995 * 218.40742 * 19 17 16 21 21 C 1.54906 * 101.74558 * 35.48042 * 20 19 17 22 22 N 1.47436 * 109.89140 * 117.35345 * 17 16 15 23 23 N 1.31387 * 120.24958 * 0.02562 * 16 15 14 24 24 C 1.34336 * 120.77525 * 359.97438 * 23 16 15 25 25 N 1.31435 * 119.76931 * 180.02562 * 24 23 16 26 26 H 1.08994 * 109.46822 * 305.13297 * 1 2 3 27 27 H 1.09003 * 109.47185 * 65.13302 * 1 2 3 28 28 H 1.08996 * 109.47255 * 185.13101 * 1 2 3 29 29 H 1.09003 * 109.47273 * 239.99980 * 2 1 3 30 30 H 1.09003 * 109.47374 * 120.00092 * 2 1 3 31 31 H 0.96998 * 120.00728 * 180.02562 * 8 7 5 32 32 H 1.07998 * 120.37369 * 359.75503 * 14 13 3 33 33 H 1.07999 * 120.24329 * 179.97438 * 15 14 13 34 34 H 1.09001 * 110.70283 * 336.69140 * 19 17 16 35 35 H 1.09001 * 110.71008 * 99.92408 * 19 17 16 36 36 H 1.08998 * 110.87033 * 277.38635 * 20 19 17 37 37 H 1.09001 * 111.02314 * 153.63252 * 20 19 17 38 38 H 1.08991 * 110.37326 * 204.19451 * 21 20 19 39 39 H 1.08997 * 110.37764 * 81.84187 * 21 20 19 40 40 H 1.00901 * 110.99841 * 356.15012 * 22 17 16 41 41 H 0.97006 * 120.00226 * 359.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6101 1.9799 0.8452 5 6 3.5426 1.4440 0.1154 6 1 4.1465 1.8101 -0.7017 7 6 4.1462 0.9780 1.2640 8 7 3.4188 0.7064 2.3254 9 14 5.9974 0.7324 1.3127 10 1 6.5812 1.1080 -0.0001 11 1 6.5824 1.5873 2.3768 12 1 6.3002 -0.6926 1.6001 13 7 1.6454 2.0999 -1.2484 14 6 2.0663 1.6039 -2.4452 15 6 1.6906 2.2273 -3.5906 16 6 0.8793 3.3670 -3.5220 17 6 0.4569 4.0651 -4.7889 18 1 0.9253 3.5871 -5.6493 19 6 0.8633 5.5526 -4.7292 20 6 -0.3412 6.2685 -5.4012 21 6 -1.5310 5.3986 -4.9246 22 7 -1.0104 4.0147 -4.9242 23 7 0.4852 3.8297 -2.3571 24 6 0.8505 3.2213 -1.2165 25 7 0.4444 3.7008 -0.0621 26 1 -0.3633 0.5914 0.8404 27 1 -0.3634 0.4322 -0.9324 28 1 -0.3633 -1.0235 0.0919 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 3.8435 0.3789 3.1337 32 1 2.6955 0.7269 -2.4819 33 1 2.0154 1.8479 -4.5481 34 1 0.9777 5.8796 -3.6957 35 1 1.7803 5.7246 -5.2927 36 1 -0.2504 6.2449 -6.4871 37 1 -0.4377 7.2929 -5.0412 38 1 -2.3681 5.4888 -5.6166 39 1 -1.8353 5.6897 -3.9193 40 1 -1.4237 3.4731 -4.1799 41 1 -0.1168 4.4916 -0.0357 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255172683.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:03 Heat of formation + Delta-G solvation = 46.501218 kcal Electronic energy + Delta-G solvation = -21938.307040 eV Core-core repulsion = 18852.716555 eV Total energy + Delta-G solvation = -3085.590484 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.02953 -39.58148 -37.27037 -35.13216 -34.64672 -33.25446 -31.07280 -30.61356 -30.27633 -28.73601 -25.71657 -24.99998 -23.57706 -22.16360 -21.95953 -21.32077 -19.11215 -18.56415 -18.22901 -17.48197 -16.65271 -16.46506 -16.33211 -16.07946 -15.05150 -14.97257 -14.71928 -14.54336 -14.22102 -13.97698 -13.55658 -13.42881 -13.35535 -13.02158 -12.87635 -12.71026 -12.43890 -12.18283 -12.13333 -12.03194 -11.86033 -11.78454 -11.61609 -11.50264 -10.93899 -10.81069 -10.53613 -10.26781 -9.45394 -8.48141 -8.20008 -6.38831 -0.03526 0.94126 1.39757 1.42315 1.52769 1.86284 2.38395 2.82828 3.06369 3.12918 3.42971 3.65373 3.86253 3.89043 3.99008 4.25323 4.27971 4.34822 4.44214 4.54448 4.59096 4.61828 4.78377 4.79738 4.92349 4.96618 5.01986 5.06569 5.14071 5.15292 5.18477 5.24700 5.37729 5.45827 5.55949 5.68218 5.85583 5.95920 6.11515 6.19322 6.23066 6.68908 7.04026 7.29873 7.65070 8.82692 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.026185 B = 0.004820 C = 0.004537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.065318 B = 5807.456221 C = 6170.188504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.113 4.113 3 C 0.258 3.742 4 H 0.048 0.952 5 C -0.553 4.553 6 H 0.060 0.940 7 C 0.028 3.972 8 N -0.908 5.908 9 Si 0.962 3.038 10 H -0.263 1.263 11 H -0.289 1.289 12 H -0.271 1.271 13 N -0.473 5.473 14 C 0.204 3.796 15 C -0.315 4.315 16 C 0.235 3.765 17 C 0.126 3.874 18 H 0.129 0.871 19 C -0.133 4.133 20 C -0.118 4.118 21 C 0.042 3.958 22 N -0.665 5.665 23 N -0.585 5.585 24 C 0.529 3.471 25 N -0.811 5.811 26 H 0.028 0.972 27 H 0.034 0.966 28 H 0.066 0.934 29 H 0.063 0.937 30 H 0.066 0.934 31 H 0.267 0.733 32 H 0.188 0.812 33 H 0.187 0.813 34 H 0.049 0.951 35 H 0.094 0.906 36 H 0.093 0.907 37 H 0.079 0.921 38 H 0.093 0.907 39 H 0.028 0.972 40 H 0.335 0.665 41 H 0.337 0.663 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.013 2.890 -17.371 18.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.152 4.152 3 C 0.157 3.843 4 H 0.066 0.934 5 C -0.591 4.591 6 H 0.078 0.922 7 C -0.174 4.174 8 N -0.545 5.545 9 Si 0.787 3.213 10 H -0.187 1.187 11 H -0.215 1.215 12 H -0.196 1.196 13 N -0.166 5.166 14 C 0.063 3.937 15 C -0.345 4.345 16 C 0.067 3.933 17 C 0.015 3.985 18 H 0.147 0.853 19 C -0.172 4.172 20 C -0.156 4.156 21 C -0.087 4.087 22 N -0.293 5.293 23 N -0.310 5.310 24 C 0.162 3.838 25 N -0.452 5.452 26 H 0.047 0.953 27 H 0.053 0.947 28 H 0.085 0.915 29 H 0.082 0.918 30 H 0.085 0.915 31 H 0.076 0.924 32 H 0.205 0.795 33 H 0.204 0.796 34 H 0.068 0.932 35 H 0.112 0.888 36 H 0.111 0.889 37 H 0.098 0.902 38 H 0.111 0.889 39 H 0.047 0.953 40 H 0.151 0.849 41 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -4.400 3.129 -16.356 17.224 hybrid contribution 0.997 0.173 1.304 1.651 sum -3.404 3.302 -15.051 15.781 Atomic orbital electron populations 1.21622 0.96718 1.00920 0.99595 1.21753 0.94124 0.97256 1.02029 1.19241 0.94565 0.90115 0.80420 0.93410 1.21523 0.90803 1.44309 1.02440 0.92159 1.25644 1.02846 0.94567 0.94339 1.70099 1.37646 1.44101 1.02689 0.85448 0.79497 0.78087 0.78263 1.18658 1.21517 1.19584 1.45200 1.39382 1.22705 1.09330 1.22921 0.90514 0.96596 0.83637 1.21464 1.11341 1.01993 0.99668 1.22869 0.86433 0.89845 0.94158 1.21610 0.89738 0.95727 0.91377 0.85337 1.22897 1.00235 0.92993 1.01053 1.22716 0.92657 0.98662 1.01535 1.22928 0.98614 0.87543 0.99653 1.62407 1.02992 1.13639 1.50309 1.69619 1.30466 1.33006 0.97944 1.20248 0.88578 0.85383 0.89632 1.70183 1.29253 1.23795 1.21956 0.95294 0.94657 0.91504 0.91820 0.91511 0.92383 0.79519 0.79624 0.93206 0.88771 0.88883 0.90205 0.88858 0.95302 0.84936 0.84803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.18 9.74 71.98 0.70 -4.48 16 2 C -0.11 -4.92 5.22 30.59 0.16 -4.76 16 3 C 0.26 12.69 1.90 44.24 0.08 12.77 16 4 H 0.05 2.85 6.74 -2.39 -0.02 2.83 16 5 C -0.55 -28.63 8.28 25.60 0.21 -28.42 16 6 H 0.06 3.06 7.53 -2.91 -0.02 3.04 16 7 C 0.03 1.46 5.16 84.65 0.44 1.89 16 8 N -0.91 -50.76 12.16 21.44 0.26 -50.50 16 9 Si 0.96 41.22 29.55 68.60 2.03 43.25 16 10 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 11 H -0.29 -12.62 7.11 99.48 0.71 -11.91 16 12 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 13 N -0.47 -20.15 2.14 -509.50 -1.09 -21.24 16 14 C 0.20 6.72 9.01 83.43 0.75 7.48 16 15 C -0.31 -8.36 9.67 22.13 0.21 -8.15 16 16 C 0.23 6.88 5.33 43.07 0.23 7.11 16 17 C 0.13 2.76 3.81 44.51 0.17 2.93 16 18 H 0.13 2.18 7.93 -2.39 -0.02 2.16 16 19 C -0.13 -2.79 6.45 31.86 0.21 -2.58 16 20 C -0.12 -2.00 7.08 32.07 0.23 -1.77 16 21 C 0.04 0.83 7.58 86.77 0.66 1.49 16 22 N -0.66 -14.91 7.37 -486.20 -3.58 -18.49 16 23 N -0.59 -21.89 9.68 -185.61 -1.80 -23.69 16 24 C 0.53 23.56 8.43 261.57 2.20 25.76 16 25 N -0.81 -39.85 12.62 -59.88 -0.76 -40.60 16 26 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 27 H 0.03 1.34 7.89 -2.39 -0.02 1.32 16 28 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 29 H 0.06 2.42 7.14 -2.39 -0.02 2.41 16 30 H 0.07 3.27 6.80 -2.39 -0.02 3.25 16 31 H 0.27 14.12 8.31 -92.71 -0.77 13.35 16 32 H 0.19 5.27 7.45 -2.91 -0.02 5.25 16 33 H 0.19 3.22 7.99 -2.91 -0.02 3.20 16 34 H 0.05 1.37 7.37 -2.39 -0.02 1.36 16 35 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 36 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 37 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 38 H 0.09 1.55 8.14 -2.39 -0.02 1.54 16 39 H 0.03 0.67 8.14 -2.39 -0.02 0.65 16 40 H 0.33 8.68 8.18 -89.69 -0.73 7.94 16 41 H 0.34 15.46 8.90 -92.70 -0.82 14.64 16 Total: -1.00 -64.70 331.69 0.80 -63.90 By element: Atomic # 1 Polarization: 38.60 SS G_CDS: -0.52 Total: 38.09 kcal Atomic # 6 Polarization: 3.02 SS G_CDS: 6.25 Total: 9.27 kcal Atomic # 7 Polarization: -147.55 SS G_CDS: -6.96 Total: -154.51 kcal Atomic # 14 Polarization: 41.22 SS G_CDS: 2.03 Total: 43.25 kcal Total: -64.70 0.80 -63.90 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255172683.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.404 kcal (2) G-P(sol) polarization free energy of solvation -64.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.903 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds