Wall clock time and date at job start Mon Mar 30 2020 02:14:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52997 * 109.47161 * 2 1 4 4 H 1.09005 * 109.47074 * 182.14367 * 3 2 1 5 5 C 1.50707 * 109.47003 * 62.14640 * 3 2 1 6 6 H 1.08000 * 119.99576 * 239.72299 * 5 3 2 7 7 C 1.37878 * 119.99714 * 59.99963 * 5 3 2 8 8 N 1.31514 * 120.00165 * 359.97438 * 7 5 3 9 9 Si 1.86804 * 119.99454 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47354 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.46896 * 120.00142 * 9 7 5 12 12 H 1.48507 * 109.46784 * 239.99768 * 9 7 5 13 13 N 1.46899 * 109.47328 * 302.14426 * 3 2 1 14 14 C 1.46967 * 111.00314 * 173.77346 * 13 3 2 15 15 C 1.53469 * 109.73058 * 53.38319 * 14 13 3 16 16 N 1.46300 * 108.17813 * 49.60843 * 15 14 13 17 17 C 1.35953 * 123.86186 * 343.75622 * 16 15 14 18 18 N 1.29632 * 107.35938 * 179.73971 * 17 16 15 19 19 N 1.28982 * 109.47188 * 0.14500 * 18 17 16 20 20 C 1.30922 * 109.76160 * 359.95592 * 19 18 17 21 21 C 1.50693 * 126.48659 * 179.89077 * 20 19 18 22 22 C 1.53005 * 117.49750 * 8.66230 * 21 20 19 23 23 C 1.53004 * 60.00092 * 252.50726 * 22 21 20 24 24 C 1.47388 * 111.00077 * 298.04986 * 13 3 2 25 25 H 1.09002 * 109.46538 * 304.36668 * 1 2 3 26 26 H 1.08992 * 109.47245 * 64.36559 * 1 2 3 27 27 H 1.08993 * 109.46888 * 184.36822 * 1 2 3 28 28 H 1.09000 * 109.46453 * 240.00367 * 2 1 3 29 29 H 1.08995 * 109.47112 * 120.00596 * 2 1 3 30 30 H 0.97001 * 119.99609 * 180.02562 * 8 7 5 31 31 H 1.08994 * 109.43099 * 173.46785 * 14 13 3 32 32 H 1.09005 * 109.42942 * 293.36462 * 14 13 3 33 33 H 1.09010 * 109.71861 * 169.27308 * 15 14 13 34 34 H 1.08998 * 109.72334 * 289.92894 * 15 14 13 35 35 H 1.09001 * 115.55392 * 154.37273 * 21 20 19 36 36 H 1.09000 * 117.49966 * 0.02562 * 22 21 20 37 37 H 1.09005 * 117.49398 * 145.02303 * 22 21 20 38 38 H 1.09000 * 117.50216 * 252.51119 * 23 22 21 39 39 H 1.09002 * 117.51469 * 107.48019 * 23 22 21 40 40 H 1.08998 * 109.75238 * 45.56687 * 24 13 3 41 41 H 1.09001 * 109.74903 * 166.30317 * 24 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1295 1.4427 -0.0384 5 6 1.5816 2.1374 1.2563 6 1 0.9615 3.0191 1.1900 7 6 1.9587 1.6507 2.4900 8 7 2.7179 0.5799 2.5705 9 14 1.3898 2.5117 4.0471 10 1 0.5514 3.6832 3.6870 11 1 0.5939 1.5676 4.8721 12 1 2.5725 2.9688 4.8202 13 7 1.5086 2.1498 -1.1727 14 6 1.8560 3.5772 -1.1290 15 6 3.3712 3.7362 -0.9448 16 7 4.0423 2.8888 -1.9306 17 6 3.4268 1.8861 -2.6118 18 7 4.3096 1.3537 -3.3977 19 7 5.4390 1.9586 -3.2481 20 6 5.3177 2.9079 -2.3547 21 6 6.4028 3.8443 -1.8892 22 6 7.7297 3.8220 -2.6507 23 6 7.6440 3.2230 -1.2454 24 6 1.9753 1.5245 -2.4230 25 1 -0.3632 0.5801 0.8483 26 1 -0.3633 0.4446 -0.9264 27 1 -0.3633 -1.0246 0.0783 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 2.9828 0.2373 3.4385 31 1 1.5521 4.0530 -2.0613 32 1 1.3385 4.0509 -0.2947 33 1 3.6535 4.7774 -1.1018 34 1 3.6541 3.4255 0.0610 35 1 6.0611 4.8037 -1.5007 36 1 7.8176 3.1304 -3.4886 37 1 8.2611 4.7671 -2.7633 38 1 8.1190 3.7738 -0.4336 39 1 7.6755 2.1369 -1.1582 40 1 1.8714 0.4417 -2.3546 41 1 1.3901 1.8990 -3.2629 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255172812.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:10 Heat of formation + Delta-G solvation = 116.484644 kcal Electronic energy + Delta-G solvation = -22687.489680 eV Core-core repulsion = 19604.933905 eV Total energy + Delta-G solvation = -3082.555775 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.91547 -38.33918 -37.07276 -34.57984 -32.99672 -31.16810 -30.61240 -28.80520 -26.96130 -24.63585 -24.17045 -23.74840 -22.46309 -22.23987 -20.44774 -19.96036 -18.36586 -16.91952 -16.28110 -16.04644 -15.47008 -15.24541 -14.79408 -14.45076 -14.09257 -13.72929 -13.60992 -12.78382 -12.56783 -12.34533 -12.22452 -11.97631 -11.53889 -11.50018 -11.23620 -11.07643 -10.96194 -10.90638 -10.73559 -10.58737 -10.39454 -10.16309 -9.93357 -9.87533 -9.63081 -9.52996 -8.98095 -8.59865 -8.44631 -7.63649 -6.17364 -4.24459 2.17546 2.85268 3.17014 3.19257 3.27055 3.28161 3.93085 4.23432 4.37040 4.60094 4.73221 4.80530 4.88440 4.98154 5.06758 5.15378 5.29062 5.41895 5.61534 5.63452 5.76761 5.82718 5.99621 6.07825 6.16321 6.18875 6.23673 6.40477 6.43823 6.49977 6.58073 6.65647 7.02854 7.07121 7.18792 7.27948 7.45141 7.57180 7.65554 7.84672 8.12570 8.29504 8.80279 9.15700 9.41114 10.88293 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.018059 B = 0.006741 C = 0.005653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1550.090394 B = 4152.925596 C = 4951.971455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.114 4.114 3 C 0.211 3.789 4 H 0.004 0.996 5 C -0.508 4.508 6 H 0.065 0.935 7 C 0.064 3.936 8 N -0.885 5.885 9 Si 0.893 3.107 10 H -0.272 1.272 11 H -0.283 1.283 12 H -0.286 1.286 13 N -0.519 5.519 14 C 0.056 3.944 15 C 0.068 3.932 16 N -0.455 5.455 17 C 0.157 3.843 18 N -0.299 5.299 19 N -0.307 5.307 20 C 0.202 3.798 21 C -0.083 4.083 22 C -0.151 4.151 23 C -0.157 4.157 24 C 0.132 3.868 25 H 0.059 0.941 26 H 0.041 0.959 27 H 0.018 0.982 28 H 0.016 0.984 29 H 0.094 0.906 30 H 0.262 0.738 31 H 0.064 0.936 32 H 0.110 0.890 33 H 0.083 0.917 34 H 0.110 0.890 35 H 0.119 0.881 36 H 0.108 0.892 37 H 0.100 0.900 38 H 0.102 0.898 39 H 0.100 0.900 40 H 0.109 0.891 41 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.006 7.561 -5.639 9.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.152 4.152 3 C 0.106 3.894 4 H 0.021 0.979 5 C -0.547 4.547 6 H 0.083 0.917 7 C -0.138 4.138 8 N -0.523 5.523 9 Si 0.720 3.280 10 H -0.197 1.197 11 H -0.209 1.209 12 H -0.212 1.212 13 N -0.241 5.241 14 C -0.073 4.073 15 C -0.056 4.056 16 N -0.145 5.145 17 C -0.113 4.113 18 N -0.139 5.139 19 N -0.148 5.148 20 C -0.065 4.065 21 C -0.103 4.103 22 C -0.189 4.189 23 C -0.195 4.195 24 C 0.000 4.000 25 H 0.078 0.922 26 H 0.060 0.940 27 H 0.037 0.963 28 H 0.034 0.966 29 H 0.112 0.888 30 H 0.072 0.928 31 H 0.083 0.917 32 H 0.128 0.872 33 H 0.102 0.898 34 H 0.128 0.872 35 H 0.137 0.863 36 H 0.126 0.874 37 H 0.118 0.882 38 H 0.120 0.880 39 H 0.118 0.882 40 H 0.127 0.873 41 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 3.152 6.503 -6.481 9.707 hybrid contribution 0.091 1.293 1.990 2.375 sum 3.243 7.796 -4.491 9.564 Atomic orbital electron populations 1.21472 0.96974 0.97943 1.01499 1.21594 0.95353 0.97802 1.00438 1.19441 0.92878 0.91200 0.85914 0.97885 1.21051 1.31958 1.12223 0.89443 0.91708 1.24912 0.94928 0.94959 0.99036 1.69894 1.35558 1.22182 1.24660 0.86526 0.78474 0.79673 0.83282 1.19652 1.20881 1.21186 1.62586 1.57957 1.01235 1.02335 1.22436 0.90130 0.91870 1.02862 1.22872 0.96355 0.93640 0.92777 1.45858 1.09051 1.27360 1.32203 1.25893 1.00416 0.90410 0.94591 1.73898 0.96031 1.22793 1.21139 1.74350 1.17106 1.06890 1.16479 1.23351 0.85209 1.00110 0.97854 1.19992 0.86104 0.97470 1.06758 1.22986 0.96530 1.03165 0.96189 1.23043 0.98473 1.01622 0.96386 1.21168 0.81988 1.02343 0.94462 0.92182 0.93977 0.96303 0.96578 0.88774 0.92808 0.91742 0.87208 0.89841 0.87153 0.86270 0.87357 0.88151 0.87952 0.88178 0.87296 0.88926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.49 9.52 37.16 0.35 -2.14 16 2 C -0.11 -2.58 5.19 -26.73 -0.14 -2.72 16 3 C 0.21 4.74 1.07 -68.86 -0.07 4.67 16 4 H 0.00 0.09 6.11 -51.93 -0.32 -0.22 16 5 C -0.51 -12.10 6.26 -34.44 -0.22 -12.32 16 6 H 0.06 1.51 6.26 -52.49 -0.33 1.19 16 7 C 0.06 1.61 5.30 -17.82 -0.09 1.51 16 8 N -0.88 -23.62 11.30 55.43 0.63 -22.99 16 9 Si 0.89 19.63 29.54 -169.99 -5.02 14.61 16 10 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 11 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 12 H -0.29 -6.34 7.11 56.52 0.40 -5.94 16 13 N -0.52 -9.78 4.05 -228.65 -0.93 -10.71 16 14 C 0.06 0.92 5.46 -3.54 -0.02 0.90 16 15 C 0.07 1.10 6.13 -3.91 -0.02 1.08 16 16 N -0.46 -8.37 2.85 -110.79 -0.32 -8.69 16 17 C 0.16 3.09 7.15 -155.27 -1.11 1.98 16 18 N -0.30 -6.39 12.20 32.76 0.40 -5.99 16 19 N -0.31 -6.30 11.87 32.66 0.39 -5.91 16 20 C 0.20 3.66 7.60 -155.63 -1.18 2.48 16 21 C -0.08 -1.14 6.12 -91.77 -0.56 -1.70 16 22 C -0.15 -1.75 10.15 -26.73 -0.27 -2.02 16 23 C -0.16 -1.96 10.23 -26.73 -0.27 -2.23 16 24 C 0.13 2.35 6.06 -4.67 -0.03 2.32 16 25 H 0.06 1.33 7.14 -51.93 -0.37 0.96 16 26 H 0.04 0.80 7.69 -51.93 -0.40 0.40 16 27 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 28 H 0.02 0.35 6.28 -51.93 -0.33 0.02 16 29 H 0.09 2.44 6.01 -51.93 -0.31 2.12 16 30 H 0.26 6.75 8.31 -40.82 -0.34 6.41 16 31 H 0.06 0.92 8.08 -51.93 -0.42 0.50 16 32 H 0.11 1.80 6.38 -51.93 -0.33 1.46 16 33 H 0.08 1.08 8.14 -51.92 -0.42 0.66 16 34 H 0.11 2.09 6.73 -51.93 -0.35 1.74 16 35 H 0.12 1.39 8.14 -51.93 -0.42 0.97 16 36 H 0.11 1.40 7.93 -51.93 -0.41 0.99 16 37 H 0.10 0.89 8.14 -51.93 -0.42 0.46 16 38 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 39 H 0.10 1.44 8.14 -51.93 -0.42 1.01 16 40 H 0.11 2.01 5.83 -51.93 -0.30 1.71 16 41 H 0.09 1.43 8.14 -51.93 -0.42 1.00 16 LS Contribution 319.12 15.07 4.81 4.81 Total: -1.00 -28.80 319.12 -9.64 -38.44 By element: Atomic # 1 Polarization: 10.57 SS G_CDS: -5.96 Total: 4.61 kcal Atomic # 6 Polarization: -4.55 SS G_CDS: -3.64 Total: -8.19 kcal Atomic # 7 Polarization: -54.46 SS G_CDS: 0.17 Total: -54.28 kcal Atomic # 14 Polarization: 19.63 SS G_CDS: -5.02 Total: 14.61 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -28.80 -9.64 -38.44 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255172812.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.925 kcal (2) G-P(sol) polarization free energy of solvation -28.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 126.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.440 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds