Wall clock time and date at job start Mon Mar 30 2020 02:14:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52997 * 109.47161 * 2 1 4 4 H 1.09005 * 109.47074 * 182.14367 * 3 2 1 5 5 C 1.50707 * 109.47003 * 62.14640 * 3 2 1 6 6 H 1.08000 * 119.99576 * 239.72299 * 5 3 2 7 7 C 1.37878 * 119.99714 * 59.99963 * 5 3 2 8 8 N 1.31514 * 120.00165 * 359.97438 * 7 5 3 9 9 Si 1.86804 * 119.99454 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47354 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.46896 * 120.00142 * 9 7 5 12 12 H 1.48507 * 109.46784 * 239.99768 * 9 7 5 13 13 N 1.46899 * 109.47328 * 302.14426 * 3 2 1 14 14 C 1.46967 * 111.00314 * 173.77346 * 13 3 2 15 15 C 1.53469 * 109.73058 * 53.38319 * 14 13 3 16 16 N 1.46300 * 108.17813 * 49.60843 * 15 14 13 17 17 C 1.35953 * 123.86186 * 343.75622 * 16 15 14 18 18 N 1.29632 * 107.35938 * 179.73971 * 17 16 15 19 19 N 1.28982 * 109.47188 * 0.14500 * 18 17 16 20 20 C 1.30922 * 109.76160 * 359.95592 * 19 18 17 21 21 C 1.50693 * 126.48659 * 179.89077 * 20 19 18 22 22 C 1.53005 * 117.49750 * 8.66230 * 21 20 19 23 23 C 1.53004 * 60.00092 * 252.50726 * 22 21 20 24 24 C 1.47388 * 111.00077 * 298.04986 * 13 3 2 25 25 H 1.09002 * 109.46538 * 304.36668 * 1 2 3 26 26 H 1.08992 * 109.47245 * 64.36559 * 1 2 3 27 27 H 1.08993 * 109.46888 * 184.36822 * 1 2 3 28 28 H 1.09000 * 109.46453 * 240.00367 * 2 1 3 29 29 H 1.08995 * 109.47112 * 120.00596 * 2 1 3 30 30 H 0.97001 * 119.99609 * 180.02562 * 8 7 5 31 31 H 1.08994 * 109.43099 * 173.46785 * 14 13 3 32 32 H 1.09005 * 109.42942 * 293.36462 * 14 13 3 33 33 H 1.09010 * 109.71861 * 169.27308 * 15 14 13 34 34 H 1.08998 * 109.72334 * 289.92894 * 15 14 13 35 35 H 1.09001 * 115.55392 * 154.37273 * 21 20 19 36 36 H 1.09000 * 117.49966 * 0.02562 * 22 21 20 37 37 H 1.09005 * 117.49398 * 145.02303 * 22 21 20 38 38 H 1.09000 * 117.50216 * 252.51119 * 23 22 21 39 39 H 1.09002 * 117.51469 * 107.48019 * 23 22 21 40 40 H 1.08998 * 109.75238 * 45.56687 * 24 13 3 41 41 H 1.09001 * 109.74903 * 166.30317 * 24 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1295 1.4427 -0.0384 5 6 1.5816 2.1374 1.2563 6 1 0.9615 3.0191 1.1900 7 6 1.9587 1.6507 2.4900 8 7 2.7179 0.5799 2.5705 9 14 1.3898 2.5117 4.0471 10 1 0.5514 3.6832 3.6870 11 1 0.5939 1.5676 4.8721 12 1 2.5725 2.9688 4.8202 13 7 1.5086 2.1498 -1.1727 14 6 1.8560 3.5772 -1.1290 15 6 3.3712 3.7362 -0.9448 16 7 4.0423 2.8888 -1.9306 17 6 3.4268 1.8861 -2.6118 18 7 4.3096 1.3537 -3.3977 19 7 5.4390 1.9586 -3.2481 20 6 5.3177 2.9079 -2.3547 21 6 6.4028 3.8443 -1.8892 22 6 7.7297 3.8220 -2.6507 23 6 7.6440 3.2230 -1.2454 24 6 1.9753 1.5245 -2.4230 25 1 -0.3632 0.5801 0.8483 26 1 -0.3633 0.4446 -0.9264 27 1 -0.3633 -1.0246 0.0783 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 2.9828 0.2373 3.4385 31 1 1.5521 4.0530 -2.0613 32 1 1.3385 4.0509 -0.2947 33 1 3.6535 4.7774 -1.1018 34 1 3.6541 3.4255 0.0610 35 1 6.0611 4.8037 -1.5007 36 1 7.8176 3.1304 -3.4886 37 1 8.2611 4.7671 -2.7633 38 1 8.1190 3.7738 -0.4336 39 1 7.6755 2.1369 -1.1582 40 1 1.8714 0.4417 -2.3546 41 1 1.3901 1.8990 -3.2629 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255172812.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:09 Heat of formation + Delta-G solvation = 100.421621 kcal Electronic energy + Delta-G solvation = -22688.186225 eV Core-core repulsion = 19604.933905 eV Total energy + Delta-G solvation = -3083.252320 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -44.36262 -39.86197 -38.12911 -36.18562 -34.65054 -32.92450 -32.06996 -30.23850 -28.71218 -26.15972 -25.76003 -25.09335 -23.89360 -23.30340 -22.06120 -21.24766 -19.98666 -18.28647 -17.88714 -17.63910 -17.02107 -16.62328 -16.19144 -15.78539 -15.71272 -15.32437 -14.96728 -14.21007 -14.19639 -13.84237 -13.75395 -13.41459 -12.99741 -12.83030 -12.73674 -12.57469 -12.47908 -12.40953 -12.11709 -12.07794 -11.76979 -11.62361 -11.60308 -11.36112 -11.32633 -10.98835 -10.78959 -10.50103 -9.87778 -9.23921 -8.09110 -6.20551 0.77800 1.41897 1.47092 1.50535 1.55501 1.72191 2.42045 2.88806 3.11107 3.14153 3.23435 3.39145 3.62447 3.77745 3.87639 3.96781 4.06982 4.12844 4.31824 4.44423 4.56873 4.64409 4.71959 4.74981 4.81691 4.85723 4.87853 4.94794 4.96811 5.09840 5.16804 5.23664 5.29952 5.40339 5.45029 5.68438 5.74423 5.83775 5.90338 6.18931 6.27991 6.52936 6.92438 7.48548 7.67164 8.96482 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.018059 B = 0.006741 C = 0.005653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1550.090394 B = 4152.925596 C = 4951.971455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.114 4.114 3 C 0.225 3.775 4 H -0.037 1.037 5 C -0.499 4.499 6 H 0.073 0.927 7 C 0.017 3.983 8 N -0.921 5.921 9 Si 0.950 3.050 10 H -0.257 1.257 11 H -0.290 1.290 12 H -0.289 1.289 13 N -0.518 5.518 14 C 0.054 3.946 15 C 0.072 3.928 16 N -0.460 5.460 17 C 0.146 3.854 18 N -0.331 5.331 19 N -0.341 5.341 20 C 0.205 3.795 21 C -0.103 4.103 22 C -0.130 4.130 23 C -0.157 4.157 24 C 0.135 3.865 25 H 0.042 0.958 26 H 0.059 0.941 27 H 0.031 0.969 28 H 0.017 0.983 29 H 0.059 0.941 30 H 0.257 0.743 31 H 0.094 0.906 32 H 0.112 0.888 33 H 0.125 0.875 34 H 0.079 0.921 35 H 0.148 0.852 36 H 0.089 0.911 37 H 0.138 0.862 38 H 0.131 0.869 39 H 0.071 0.929 40 H 0.098 0.902 41 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.427 10.245 -5.927 12.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.152 4.152 3 C 0.119 3.881 4 H -0.020 1.020 5 C -0.538 4.538 6 H 0.091 0.909 7 C -0.182 4.182 8 N -0.561 5.561 9 Si 0.777 3.223 10 H -0.180 1.180 11 H -0.216 1.216 12 H -0.215 1.215 13 N -0.239 5.239 14 C -0.074 4.074 15 C -0.052 4.052 16 N -0.149 5.149 17 C -0.125 4.125 18 N -0.171 5.171 19 N -0.181 5.181 20 C -0.062 4.062 21 C -0.123 4.123 22 C -0.168 4.168 23 C -0.196 4.196 24 C 0.004 3.996 25 H 0.061 0.939 26 H 0.078 0.922 27 H 0.050 0.950 28 H 0.036 0.964 29 H 0.077 0.923 30 H 0.066 0.934 31 H 0.113 0.887 32 H 0.130 0.870 33 H 0.143 0.857 34 H 0.098 0.902 35 H 0.165 0.835 36 H 0.108 0.892 37 H 0.156 0.844 38 H 0.149 0.851 39 H 0.090 0.910 40 H 0.116 0.884 41 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 2.561 9.204 -6.787 11.719 hybrid contribution 0.322 0.443 2.040 2.112 sum 2.883 9.647 -4.747 11.131 Atomic orbital electron populations 1.21328 0.94947 0.98698 1.01549 1.21508 0.97040 0.97874 0.98803 1.19087 0.90414 0.91388 0.87249 1.01978 1.21293 1.30769 1.11911 0.89784 0.90898 1.25613 0.95227 0.95495 1.01887 1.70057 1.37329 1.23904 1.24795 0.85616 0.77831 0.78931 0.79926 1.18050 1.21647 1.21550 1.62510 1.57502 1.02520 1.01364 1.22565 0.90117 0.90175 1.04554 1.22907 0.96205 0.95294 0.90760 1.46030 1.09247 1.27364 1.32256 1.26181 1.00977 0.90681 0.94627 1.73801 0.96773 1.23881 1.22630 1.74266 1.17184 1.08309 1.18376 1.24179 0.85980 0.99601 0.96487 1.20378 0.85679 0.97799 1.08436 1.23069 0.94755 1.04184 0.94773 1.23087 0.97906 1.00363 0.98223 1.21261 0.81580 1.01851 0.94862 0.93856 0.92211 0.94988 0.96423 0.92269 0.93356 0.88737 0.86953 0.85750 0.90221 0.83455 0.89205 0.84368 0.85084 0.91046 0.88407 0.85787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.34 9.52 71.99 0.69 -3.65 16 2 C -0.11 -5.26 5.19 30.60 0.16 -5.10 16 3 C 0.23 10.17 1.07 44.17 0.05 10.22 16 4 H -0.04 -1.98 6.11 -2.38 -0.01 -2.00 16 5 C -0.50 -23.56 6.26 25.60 0.16 -23.40 16 6 H 0.07 3.28 6.26 -2.91 -0.02 3.26 16 7 C 0.02 0.84 5.30 84.65 0.45 1.29 16 8 N -0.92 -50.61 11.30 21.45 0.24 -50.37 16 9 Si 0.95 40.14 29.54 68.60 2.03 42.17 16 10 H -0.26 -10.12 7.11 99.48 0.71 -9.42 16 11 H -0.29 -12.52 7.11 99.48 0.71 -11.81 16 12 H -0.29 -12.29 7.11 99.48 0.71 -11.58 16 13 N -0.52 -18.77 4.05 -877.31 -3.55 -22.32 16 14 C 0.05 1.63 5.46 86.45 0.47 2.11 16 15 C 0.07 2.20 6.13 86.57 0.53 2.73 16 16 N -0.46 -16.55 2.85 -504.44 -1.44 -17.99 16 17 C 0.15 5.74 7.15 138.11 0.99 6.73 16 18 N -0.33 -14.41 12.20 -50.26 -0.61 -15.03 16 19 N -0.34 -14.20 11.87 -50.59 -0.60 -14.80 16 20 C 0.21 7.35 7.60 138.20 1.05 8.40 16 21 C -0.10 -2.63 6.12 -11.54 -0.07 -2.70 16 22 C -0.13 -2.72 10.15 30.60 0.31 -2.41 16 23 C -0.16 -3.70 10.23 30.60 0.31 -3.39 16 24 C 0.14 4.69 6.06 85.49 0.52 5.21 16 25 H 0.04 1.87 7.14 -2.39 -0.02 1.85 16 26 H 0.06 2.17 7.69 -2.39 -0.02 2.15 16 27 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 28 H 0.02 0.78 6.28 -2.39 -0.01 0.76 16 29 H 0.06 3.17 6.01 -2.39 -0.01 3.16 16 30 H 0.26 13.72 8.31 -92.71 -0.77 12.95 16 31 H 0.09 2.33 8.08 -2.39 -0.02 2.31 16 32 H 0.11 3.35 6.38 -2.38 -0.02 3.33 16 33 H 0.12 2.77 8.14 -2.38 -0.02 2.75 16 34 H 0.08 2.99 6.73 -2.39 -0.02 2.97 16 35 H 0.15 2.90 8.14 -2.39 -0.02 2.88 16 36 H 0.09 2.25 7.93 -2.39 -0.02 2.23 16 37 H 0.14 1.86 8.14 -2.38 -0.02 1.84 16 38 H 0.13 2.31 8.14 -2.39 -0.02 2.29 16 39 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 40 H 0.10 3.60 5.83 -2.39 -0.01 3.59 16 41 H 0.12 3.51 8.14 -2.39 -0.02 3.49 16 Total: -1.00 -64.79 319.12 2.71 -62.08 By element: Atomic # 1 Polarization: 19.19 SS G_CDS: 1.03 Total: 20.23 kcal Atomic # 6 Polarization: -9.58 SS G_CDS: 5.61 Total: -3.97 kcal Atomic # 7 Polarization: -114.54 SS G_CDS: -5.96 Total: -120.51 kcal Atomic # 14 Polarization: 40.14 SS G_CDS: 2.03 Total: 42.17 kcal Total: -64.79 2.71 -62.08 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255172812.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.504 kcal (2) G-P(sol) polarization free energy of solvation -64.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.082 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds