Wall clock time and date at job start Mon Mar 30 2020 02:14:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53000 * 109.47556 * 2 1 4 4 H 1.08999 * 109.46844 * 56.99048 * 3 2 1 5 5 C 1.50695 * 109.47117 * 176.99779 * 3 2 1 6 6 H 1.07994 * 120.00187 * 120.00557 * 5 3 2 7 7 C 1.37878 * 119.99842 * 299.72188 * 5 3 2 8 8 N 1.31510 * 120.00028 * 0.27622 * 7 5 3 9 9 Si 1.86795 * 119.99972 * 180.28010 * 7 5 3 10 10 H 1.48495 * 109.47264 * 359.97438 * 9 7 5 11 11 H 1.48507 * 109.47380 * 120.00311 * 9 7 5 12 12 H 1.48507 * 109.47192 * 239.99737 * 9 7 5 13 13 N 1.46903 * 109.46924 * 296.99508 * 3 2 1 14 14 C 1.46965 * 111.00165 * 293.95437 * 13 3 2 15 15 C 1.53456 * 109.75119 * 165.13970 * 14 13 3 16 16 N 1.46312 * 108.18296 * 49.57382 * 15 14 13 17 17 C 1.35937 * 123.86378 * 343.77116 * 16 15 14 18 18 N 1.29632 * 107.35888 * 179.67849 * 17 16 15 19 19 N 1.28975 * 109.47207 * 0.15199 * 18 17 16 20 20 C 1.30919 * 109.75916 * 359.94198 * 19 18 17 21 21 C 1.50701 * 126.48485 * 179.97438 * 20 19 18 22 22 C 1.53000 * 117.50080 * 8.58955 * 21 20 19 23 23 C 1.52993 * 60.00226 * 252.51540 * 22 21 20 24 24 C 1.47390 * 111.00001 * 169.67615 * 13 3 2 25 25 H 1.08990 * 109.47280 * 185.05164 * 1 2 3 26 26 H 1.09000 * 109.46962 * 305.05477 * 1 2 3 27 27 H 1.09007 * 109.46514 * 65.04951 * 1 2 3 28 28 H 1.09003 * 109.46599 * 239.99947 * 2 1 3 29 29 H 1.08998 * 109.46957 * 120.00513 * 2 1 3 30 30 H 0.96998 * 120.00538 * 180.02562 * 8 7 5 31 31 H 1.08996 * 109.42531 * 285.21401 * 14 13 3 32 32 H 1.08998 * 109.42855 * 45.04322 * 14 13 3 33 33 H 1.09005 * 109.69690 * 289.91842 * 15 14 13 34 34 H 1.09000 * 109.77501 * 169.28398 * 15 14 13 35 35 H 1.08999 * 115.55446 * 154.30596 * 21 20 19 36 36 H 1.08996 * 117.49884 * 0.02562 * 22 21 20 37 37 H 1.09006 * 117.49897 * 145.02318 * 22 21 20 38 38 H 1.08999 * 117.49904 * 252.51137 * 23 22 21 39 39 H 1.08997 * 117.51961 * 107.48411 * 23 22 21 40 40 H 1.08998 * 109.75062 * 293.84199 * 24 13 3 41 41 H 1.08997 * 109.75170 * 54.57715 * 24 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0402 1.4425 0.0000 4 1 1.6335 1.9716 0.8618 5 6 3.5453 1.4430 0.0744 6 1 4.1248 1.8967 -0.7159 7 6 4.1823 0.8694 1.1544 8 7 3.4765 0.3171 2.1168 9 14 6.0478 0.8770 1.2504 10 1 6.6025 1.5542 0.0510 11 1 6.4776 1.6029 2.4726 12 1 6.5464 -0.5208 1.3040 13 7 1.6107 2.1137 -1.2341 14 6 2.2555 1.5148 -2.4112 15 6 1.5297 1.9660 -3.6858 16 7 1.3858 3.4212 -3.6384 17 6 1.5383 4.1611 -2.5083 18 7 1.3487 5.4024 -2.8301 19 7 1.0842 5.4844 -4.0898 20 6 1.0964 4.2889 -4.6233 21 6 0.8360 3.9498 -6.0684 22 6 0.7247 5.1116 -7.0577 23 6 -0.5268 4.3321 -6.6493 24 6 1.8677 3.5633 -1.1639 25 1 -0.3633 -1.0236 0.0905 26 1 -0.3633 0.5903 0.8413 27 1 -0.3632 0.4335 -0.9318 28 1 1.8933 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 3.9246 -0.0861 2.8768 31 1 3.2969 1.8332 -2.4553 32 1 2.2124 0.4284 -2.3347 33 1 0.5452 1.5003 -3.7323 34 1 2.1125 1.6822 -4.5621 35 1 1.2940 3.0271 -6.4248 36 1 0.8401 6.1212 -6.6634 37 1 1.1097 4.9535 -8.0652 38 1 -0.9652 3.6611 -7.3880 39 1 -1.2353 4.8285 -5.9861 40 1 1.2373 4.0124 -0.3965 41 1 2.9173 3.7403 -0.9292 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255172819.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:12 Heat of formation + Delta-G solvation = 110.365218 kcal Electronic energy + Delta-G solvation = -22069.927972 eV Core-core repulsion = 18987.106839 eV Total energy + Delta-G solvation = -3082.821133 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.95448 -38.09070 -37.20933 -34.88574 -32.89483 -31.63558 -30.30384 -29.36496 -26.90110 -24.87948 -23.98675 -23.59571 -22.58424 -22.38482 -20.17558 -19.71682 -18.98223 -17.10166 -16.32162 -16.28056 -15.58444 -15.29086 -14.79931 -14.60267 -14.07766 -13.67464 -13.57698 -12.91182 -12.65379 -12.44873 -12.13832 -11.90476 -11.66892 -11.49023 -11.30459 -11.11964 -11.10239 -10.96799 -10.89313 -10.71720 -10.65359 -10.17493 -10.07392 -9.83772 -9.73770 -9.68252 -9.32014 -8.58950 -8.53227 -7.50719 -6.16539 -4.30681 2.07105 2.75282 3.10118 3.16791 3.26663 3.28964 3.79085 4.22974 4.26965 4.41679 4.62006 4.73224 4.82586 4.85848 4.90321 5.11095 5.28712 5.33828 5.48091 5.53869 5.69040 5.86341 5.97743 6.04254 6.12474 6.22070 6.22271 6.27363 6.30002 6.39288 6.49589 6.51786 6.88390 6.98937 7.08477 7.16271 7.35523 7.55519 7.65217 7.90946 7.95685 8.20305 8.76445 9.06814 9.38691 10.83931 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.025075 B = 0.004867 C = 0.004537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.392288 B = 5751.636606 C = 6170.631286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.109 4.109 3 C 0.216 3.784 4 H 0.047 0.953 5 C -0.554 4.554 6 H 0.057 0.943 7 C 0.074 3.926 8 N -0.880 5.880 9 Si 0.888 3.112 10 H -0.275 1.275 11 H -0.282 1.282 12 H -0.283 1.283 13 N -0.534 5.534 14 C 0.045 3.955 15 C 0.108 3.892 16 N -0.459 5.459 17 C 0.198 3.802 18 N -0.301 5.301 19 N -0.304 5.304 20 C 0.195 3.805 21 C -0.082 4.082 22 C -0.151 4.151 23 C -0.159 4.159 24 C 0.142 3.858 25 H 0.027 0.973 26 H 0.041 0.959 27 H 0.044 0.956 28 H 0.033 0.967 29 H 0.096 0.904 30 H 0.263 0.737 31 H 0.049 0.951 32 H 0.103 0.897 33 H 0.090 0.910 34 H 0.087 0.913 35 H 0.120 0.880 36 H 0.109 0.891 37 H 0.101 0.899 38 H 0.102 0.898 39 H 0.099 0.901 40 H 0.102 0.898 41 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.075 0.666 -13.517 14.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.148 4.148 3 C 0.110 3.890 4 H 0.065 0.935 5 C -0.593 4.593 6 H 0.075 0.925 7 C -0.130 4.130 8 N -0.518 5.518 9 Si 0.716 3.284 10 H -0.199 1.199 11 H -0.208 1.208 12 H -0.209 1.209 13 N -0.259 5.259 14 C -0.084 4.084 15 C -0.016 4.016 16 N -0.149 5.149 17 C -0.070 4.070 18 N -0.141 5.141 19 N -0.145 5.145 20 C -0.072 4.072 21 C -0.103 4.103 22 C -0.188 4.188 23 C -0.197 4.197 24 C 0.011 3.989 25 H 0.046 0.954 26 H 0.060 0.940 27 H 0.063 0.937 28 H 0.052 0.948 29 H 0.114 0.886 30 H 0.073 0.927 31 H 0.067 0.933 32 H 0.121 0.879 33 H 0.108 0.892 34 H 0.105 0.895 35 H 0.138 0.862 36 H 0.127 0.873 37 H 0.119 0.881 38 H 0.120 0.880 39 H 0.118 0.882 40 H 0.120 0.880 41 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -5.682 1.971 -13.235 14.537 hybrid contribution 2.115 -1.442 0.125 2.563 sum -3.567 0.529 -13.110 13.597 Atomic orbital electron populations 1.21709 0.98630 0.98620 1.00612 1.21621 0.92333 0.98635 1.02185 1.19362 0.93193 0.91216 0.85181 0.93546 1.21692 0.92242 1.38703 1.06615 0.92482 1.24873 0.98141 0.94662 0.95332 1.69861 1.35137 1.37235 1.09547 0.86600 0.85823 0.77805 0.78159 1.19948 1.20808 1.20900 1.62690 1.57405 1.00741 1.05063 1.22307 0.96042 1.01687 0.88384 1.22325 1.02850 0.75526 1.00863 1.45877 1.51423 1.09656 1.07968 1.25070 1.02375 0.88212 0.91352 1.73932 1.18740 1.15595 1.05801 1.74385 1.19936 1.18613 1.01531 1.23327 1.04731 0.86851 0.92282 1.19992 1.03335 1.01118 0.85817 1.22992 1.00719 0.96983 0.98149 1.23040 0.90523 1.03294 1.02847 1.20608 1.01744 0.89136 0.87390 0.95384 0.93950 0.93721 0.94787 0.88598 0.92668 0.93256 0.87907 0.89195 0.89497 0.86225 0.87269 0.88078 0.88013 0.88240 0.88030 0.90548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.54 9.72 37.16 0.36 -2.18 16 2 C -0.11 -2.31 5.14 -26.73 -0.14 -2.44 16 3 C 0.22 4.76 1.72 -68.87 -0.12 4.65 16 4 H 0.05 1.15 8.08 -51.93 -0.42 0.73 16 5 C -0.55 -13.45 7.12 -34.44 -0.25 -13.70 16 6 H 0.06 1.40 6.02 -52.49 -0.32 1.09 16 7 C 0.07 1.86 5.30 -17.82 -0.09 1.76 16 8 N -0.88 -23.05 11.31 55.43 0.63 -22.43 16 9 Si 0.89 19.97 29.54 -169.99 -5.02 14.95 16 10 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 11 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 12 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 13 N -0.53 -10.13 4.06 -228.66 -0.93 -11.06 16 14 C 0.04 0.75 4.68 -3.55 -0.02 0.73 16 15 C 0.11 1.48 7.12 -3.91 -0.03 1.45 16 16 N -0.46 -7.61 3.12 -110.80 -0.35 -7.95 16 17 C 0.20 3.77 7.86 -155.28 -1.22 2.55 16 18 N -0.30 -6.17 12.20 32.76 0.40 -5.77 16 19 N -0.30 -5.77 11.87 32.66 0.39 -5.39 16 20 C 0.20 3.14 7.60 -155.64 -1.18 1.96 16 21 C -0.08 -0.94 6.12 -91.77 -0.56 -1.50 16 22 C -0.15 -1.48 10.15 -26.73 -0.27 -1.75 16 23 C -0.16 -1.53 10.23 -26.73 -0.27 -1.80 16 24 C 0.14 2.70 5.73 -4.67 -0.03 2.68 16 25 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.04 0.78 7.84 -51.93 -0.41 0.37 16 28 H 0.03 0.68 6.18 -51.93 -0.32 0.36 16 29 H 0.10 2.31 6.01 -51.93 -0.31 2.00 16 30 H 0.26 6.64 8.31 -40.82 -0.34 6.30 16 31 H 0.05 0.91 6.70 -51.93 -0.35 0.56 16 32 H 0.10 1.69 5.91 -51.93 -0.31 1.38 16 33 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.12 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.11 1.25 7.92 -51.93 -0.41 0.84 16 37 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 38 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.10 1.10 8.14 -51.93 -0.42 0.67 16 40 H 0.10 1.90 8.14 -51.93 -0.42 1.48 16 41 H 0.08 1.56 7.08 -51.93 -0.37 1.19 16 LS Contribution 325.25 15.07 4.90 4.90 Total: -1.00 -28.19 325.25 -9.95 -38.13 By element: Atomic # 1 Polarization: 8.34 SS G_CDS: -6.15 Total: 2.19 kcal Atomic # 6 Polarization: -3.77 SS G_CDS: -3.82 Total: -7.59 kcal Atomic # 7 Polarization: -52.73 SS G_CDS: 0.14 Total: -52.59 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -5.02 Total: 14.95 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -28.19 -9.95 -38.13 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255172819.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.496 kcal (2) G-P(sol) polarization free energy of solvation -28.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.131 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds