Wall clock time and date at job start Mon Mar 30 2020 02:14:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53000 * 109.47556 * 2 1 4 4 H 1.08999 * 109.46844 * 56.99048 * 3 2 1 5 5 C 1.50695 * 109.47117 * 176.99779 * 3 2 1 6 6 H 1.07994 * 120.00187 * 120.00557 * 5 3 2 7 7 C 1.37878 * 119.99842 * 299.72188 * 5 3 2 8 8 N 1.31510 * 120.00028 * 0.27622 * 7 5 3 9 9 Si 1.86795 * 119.99972 * 180.28010 * 7 5 3 10 10 H 1.48495 * 109.47264 * 359.97438 * 9 7 5 11 11 H 1.48507 * 109.47380 * 120.00311 * 9 7 5 12 12 H 1.48507 * 109.47192 * 239.99737 * 9 7 5 13 13 N 1.46903 * 109.46924 * 296.99508 * 3 2 1 14 14 C 1.46965 * 111.00165 * 293.95437 * 13 3 2 15 15 C 1.53456 * 109.75119 * 165.13970 * 14 13 3 16 16 N 1.46312 * 108.18296 * 49.57382 * 15 14 13 17 17 C 1.35937 * 123.86378 * 343.77116 * 16 15 14 18 18 N 1.29632 * 107.35888 * 179.67849 * 17 16 15 19 19 N 1.28975 * 109.47207 * 0.15199 * 18 17 16 20 20 C 1.30919 * 109.75916 * 359.94198 * 19 18 17 21 21 C 1.50701 * 126.48485 * 179.97438 * 20 19 18 22 22 C 1.53000 * 117.50080 * 8.58955 * 21 20 19 23 23 C 1.52993 * 60.00226 * 252.51540 * 22 21 20 24 24 C 1.47390 * 111.00001 * 169.67615 * 13 3 2 25 25 H 1.08990 * 109.47280 * 185.05164 * 1 2 3 26 26 H 1.09000 * 109.46962 * 305.05477 * 1 2 3 27 27 H 1.09007 * 109.46514 * 65.04951 * 1 2 3 28 28 H 1.09003 * 109.46599 * 239.99947 * 2 1 3 29 29 H 1.08998 * 109.46957 * 120.00513 * 2 1 3 30 30 H 0.96998 * 120.00538 * 180.02562 * 8 7 5 31 31 H 1.08996 * 109.42531 * 285.21401 * 14 13 3 32 32 H 1.08998 * 109.42855 * 45.04322 * 14 13 3 33 33 H 1.09005 * 109.69690 * 289.91842 * 15 14 13 34 34 H 1.09000 * 109.77501 * 169.28398 * 15 14 13 35 35 H 1.08999 * 115.55446 * 154.30596 * 21 20 19 36 36 H 1.08996 * 117.49884 * 0.02562 * 22 21 20 37 37 H 1.09006 * 117.49897 * 145.02318 * 22 21 20 38 38 H 1.08999 * 117.49904 * 252.51137 * 23 22 21 39 39 H 1.08997 * 117.51961 * 107.48411 * 23 22 21 40 40 H 1.08998 * 109.75062 * 293.84199 * 24 13 3 41 41 H 1.08997 * 109.75170 * 54.57715 * 24 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0402 1.4425 0.0000 4 1 1.6335 1.9716 0.8618 5 6 3.5453 1.4430 0.0744 6 1 4.1248 1.8967 -0.7159 7 6 4.1823 0.8694 1.1544 8 7 3.4765 0.3171 2.1168 9 14 6.0478 0.8770 1.2504 10 1 6.6025 1.5542 0.0510 11 1 6.4776 1.6029 2.4726 12 1 6.5464 -0.5208 1.3040 13 7 1.6107 2.1137 -1.2341 14 6 2.2555 1.5148 -2.4112 15 6 1.5297 1.9660 -3.6858 16 7 1.3858 3.4212 -3.6384 17 6 1.5383 4.1611 -2.5083 18 7 1.3487 5.4024 -2.8301 19 7 1.0842 5.4844 -4.0898 20 6 1.0964 4.2889 -4.6233 21 6 0.8360 3.9498 -6.0684 22 6 0.7247 5.1116 -7.0577 23 6 -0.5268 4.3321 -6.6493 24 6 1.8677 3.5633 -1.1639 25 1 -0.3633 -1.0236 0.0905 26 1 -0.3633 0.5903 0.8413 27 1 -0.3632 0.4335 -0.9318 28 1 1.8933 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 3.9246 -0.0861 2.8768 31 1 3.2969 1.8332 -2.4553 32 1 2.2124 0.4284 -2.3347 33 1 0.5452 1.5003 -3.7323 34 1 2.1125 1.6822 -4.5621 35 1 1.2940 3.0271 -6.4248 36 1 0.8401 6.1212 -6.6634 37 1 1.1097 4.9535 -8.0652 38 1 -0.9652 3.6611 -7.3880 39 1 -1.2353 4.8285 -5.9861 40 1 1.2373 4.0124 -0.3965 41 1 2.9173 3.7403 -0.9292 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255172819.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:12 Heat of formation + Delta-G solvation = 95.211118 kcal Electronic energy + Delta-G solvation = -22070.585104 eV Core-core repulsion = 18987.106839 eV Total energy + Delta-G solvation = -3083.478265 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -44.30880 -39.61602 -38.07404 -36.37167 -34.55307 -33.33905 -31.72090 -30.71981 -28.62518 -26.43822 -25.13538 -25.05654 -24.04861 -23.22756 -21.48541 -21.11527 -20.53477 -18.51361 -17.88700 -17.59360 -17.07281 -16.69107 -16.09973 -15.94945 -15.45766 -15.24885 -14.83626 -14.59566 -14.00906 -13.84093 -13.43215 -13.32928 -13.18698 -12.94679 -12.79655 -12.64776 -12.44425 -12.30567 -12.28227 -12.07976 -11.86937 -11.62679 -11.55116 -11.36685 -11.26284 -11.05569 -10.98729 -10.45777 -9.94157 -9.15782 -8.08531 -6.28976 0.78630 1.35789 1.41398 1.48222 1.51462 1.71902 2.38528 2.85673 2.95084 3.13998 3.23967 3.42949 3.58536 3.82179 3.94549 4.06846 4.10832 4.21737 4.35627 4.51098 4.54714 4.69159 4.74754 4.78230 4.81046 4.88657 4.91658 4.94280 5.00735 5.09991 5.20145 5.20646 5.31157 5.41821 5.45271 5.58919 5.75900 5.83139 6.01624 6.08513 6.22286 6.42458 6.87148 7.42565 7.68219 8.88956 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.025075 B = 0.004867 C = 0.004537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.392288 B = 5751.636606 C = 6170.631286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.102 4.102 3 C 0.223 3.777 4 H 0.011 0.989 5 C -0.555 4.555 6 H 0.050 0.950 7 C 0.031 3.969 8 N -0.905 5.905 9 Si 0.942 3.058 10 H -0.275 1.275 11 H -0.286 1.286 12 H -0.278 1.278 13 N -0.527 5.527 14 C 0.045 3.955 15 C 0.112 3.888 16 N -0.459 5.459 17 C 0.183 3.817 18 N -0.332 5.332 19 N -0.340 5.340 20 C 0.212 3.788 21 C -0.100 4.100 22 C -0.145 4.145 23 C -0.144 4.144 24 C 0.150 3.850 25 H 0.047 0.953 26 H 0.029 0.971 27 H 0.056 0.944 28 H 0.044 0.956 29 H 0.065 0.935 30 H 0.263 0.737 31 H 0.030 0.970 32 H 0.110 0.890 33 H 0.111 0.889 34 H 0.127 0.873 35 H 0.152 0.848 36 H 0.085 0.915 37 H 0.133 0.867 38 H 0.136 0.864 39 H 0.079 0.921 40 H 0.095 0.905 41 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.527 -0.656 -16.558 17.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.141 4.141 3 C 0.117 3.883 4 H 0.029 0.971 5 C -0.594 4.594 6 H 0.068 0.932 7 C -0.170 4.170 8 N -0.543 5.543 9 Si 0.769 3.231 10 H -0.200 1.200 11 H -0.212 1.212 12 H -0.204 1.204 13 N -0.252 5.252 14 C -0.084 4.084 15 C -0.010 4.010 16 N -0.149 5.149 17 C -0.087 4.087 18 N -0.171 5.171 19 N -0.181 5.181 20 C -0.056 4.056 21 C -0.120 4.120 22 C -0.183 4.183 23 C -0.182 4.182 24 C 0.019 3.981 25 H 0.066 0.934 26 H 0.049 0.951 27 H 0.075 0.925 28 H 0.062 0.938 29 H 0.083 0.917 30 H 0.072 0.928 31 H 0.048 0.952 32 H 0.128 0.872 33 H 0.129 0.871 34 H 0.145 0.855 35 H 0.170 0.830 36 H 0.104 0.896 37 H 0.151 0.849 38 H 0.154 0.846 39 H 0.098 0.902 40 H 0.113 0.887 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -6.136 0.648 -16.290 17.419 hybrid contribution 2.233 -0.985 1.011 2.642 sum -3.903 -0.337 -15.279 15.773 Atomic orbital electron populations 1.21579 0.96349 0.99765 1.00715 1.21443 0.94282 0.97233 1.01110 1.19117 0.91836 0.91856 0.85523 0.97064 1.21912 0.93555 1.37777 1.06165 0.93151 1.25476 1.01362 0.94806 0.95343 1.69975 1.36271 1.38118 1.09974 0.85769 0.81992 0.77723 0.77656 1.20017 1.21181 1.20400 1.62623 1.57318 1.00427 1.04797 1.22354 0.95321 1.01910 0.88768 1.22517 1.04260 0.73806 1.00370 1.46051 1.50990 1.10677 1.07198 1.24820 1.03590 0.88426 0.91852 1.73835 1.19585 1.16683 1.07022 1.74317 1.22059 1.20576 1.01108 1.24211 1.01704 0.85785 0.93913 1.20400 1.05429 1.03124 0.83072 1.23074 1.00886 0.95334 0.98996 1.23116 0.89488 1.03122 1.02502 1.20388 1.00346 0.89367 0.87978 0.93434 0.95135 0.92507 0.93785 0.91651 0.92783 0.95206 0.87206 0.87123 0.85532 0.83042 0.89619 0.84873 0.84591 0.90245 0.88653 0.92622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.49 9.72 71.98 0.70 -3.79 16 2 C -0.10 -4.28 5.14 30.60 0.16 -4.13 16 3 C 0.22 10.04 1.72 44.17 0.08 10.12 16 4 H 0.01 0.59 8.08 -2.39 -0.02 0.57 16 5 C -0.56 -27.46 7.12 25.60 0.18 -27.28 16 6 H 0.05 2.52 6.02 -2.91 -0.02 2.51 16 7 C 0.03 1.60 5.30 84.66 0.45 2.05 16 8 N -0.90 -48.37 11.31 21.45 0.24 -48.12 16 9 Si 0.94 41.42 29.54 68.60 2.03 43.45 16 10 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 11 H -0.29 -12.66 7.11 99.48 0.71 -11.95 16 12 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 13 N -0.53 -19.98 4.06 -877.36 -3.56 -23.55 16 14 C 0.05 1.44 4.68 86.44 0.40 1.84 16 15 C 0.11 2.70 7.12 86.57 0.62 3.32 16 16 N -0.46 -14.42 3.12 -504.45 -1.57 -16.00 16 17 C 0.18 7.00 7.86 138.12 1.09 8.09 16 18 N -0.33 -13.86 12.20 -50.27 -0.61 -14.48 16 19 N -0.34 -12.91 11.87 -50.59 -0.60 -13.51 16 20 C 0.21 6.42 7.60 138.21 1.05 7.47 16 21 C -0.10 -1.91 6.12 -11.54 -0.07 -1.98 16 22 C -0.15 -2.38 10.15 30.59 0.31 -2.07 16 23 C -0.14 -2.24 10.23 30.59 0.31 -1.93 16 24 C 0.15 5.91 5.73 85.49 0.49 6.40 16 25 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 26 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 27 H 0.06 1.86 7.84 -2.38 -0.02 1.84 16 28 H 0.04 1.72 6.18 -2.39 -0.01 1.71 16 29 H 0.07 3.18 6.01 -2.39 -0.01 3.17 16 30 H 0.26 13.49 8.31 -92.71 -0.77 12.72 16 31 H 0.03 1.07 6.70 -2.39 -0.02 1.06 16 32 H 0.11 3.36 5.91 -2.39 -0.01 3.35 16 33 H 0.11 2.31 8.14 -2.38 -0.02 2.29 16 34 H 0.13 2.12 8.14 -2.39 -0.02 2.10 16 35 H 0.15 1.96 8.14 -2.39 -0.02 1.94 16 36 H 0.09 1.85 7.92 -2.39 -0.02 1.83 16 37 H 0.13 1.35 8.14 -2.38 -0.02 1.33 16 38 H 0.14 1.23 8.14 -2.39 -0.02 1.21 16 39 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 40 H 0.10 3.79 8.14 -2.39 -0.02 3.77 16 41 H 0.06 2.40 7.08 -2.39 -0.02 2.38 16 Total: -1.00 -63.43 325.25 2.71 -60.73 By element: Atomic # 1 Polarization: 12.34 SS G_CDS: 1.02 Total: 13.37 kcal Atomic # 6 Polarization: -7.65 SS G_CDS: 5.76 Total: -1.89 kcal Atomic # 7 Polarization: -109.55 SS G_CDS: -6.11 Total: -115.66 kcal Atomic # 14 Polarization: 41.42 SS G_CDS: 2.03 Total: 43.45 kcal Total: -63.43 2.71 -60.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255172819.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.939 kcal (2) G-P(sol) polarization free energy of solvation -63.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.728 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds