Wall clock time and date at job start Mon Mar 30 2020 02:14:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47012 * 2 1 4 4 H 1.09002 * 109.47246 * 56.67031 * 3 2 1 5 5 C 1.50695 * 109.47243 * 176.66958 * 3 2 1 6 6 H 1.08000 * 120.00266 * 95.23082 * 5 3 2 7 7 C 1.37881 * 120.00078 * 275.23426 * 5 3 2 8 8 N 1.31516 * 119.99625 * 355.18317 * 7 5 3 9 9 Si 1.86800 * 120.00171 * 175.18518 * 7 5 3 10 10 H 1.48497 * 109.47167 * 359.97438 * 9 7 5 11 11 H 1.48494 * 109.47118 * 119.99976 * 9 7 5 12 12 H 1.48501 * 109.46811 * 239.99734 * 9 7 5 13 13 N 1.46905 * 109.47279 * 296.67016 * 3 2 1 14 14 C 1.46956 * 110.99744 * 298.80028 * 13 3 2 15 15 C 1.53048 * 109.36209 * 176.81279 * 14 13 3 16 16 N 1.46949 * 109.36684 * 58.40046 * 15 14 13 17 17 C 1.38537 * 111.00356 * 176.81145 * 16 15 14 18 18 C 1.39675 * 120.53006 * 303.79864 * 17 16 15 19 19 C 1.38074 * 118.33113 * 179.97438 * 18 17 16 20 20 N 1.32582 * 119.20279 * 359.97438 * 19 18 17 21 21 C 1.31763 * 121.00960 * 0.02562 * 20 19 18 22 22 N 1.31782 * 121.83420 * 359.71601 * 21 20 19 23 23 C 1.46956 * 110.88103 * 300.67840 * 16 15 14 24 24 C 1.46958 * 111.00029 * 174.99893 * 13 3 2 25 25 H 1.08996 * 109.47625 * 59.99679 * 1 2 3 26 26 H 1.09002 * 109.47490 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47271 * 299.99750 * 1 2 3 28 28 H 1.08998 * 109.46764 * 240.00321 * 2 1 3 29 29 H 1.08991 * 109.47164 * 120.00335 * 2 1 3 30 30 H 0.96994 * 120.00347 * 5.20993 * 8 7 5 31 31 H 1.09006 * 109.49013 * 296.77613 * 14 13 3 32 32 H 1.09001 * 109.49112 * 56.84173 * 14 13 3 33 33 H 1.09001 * 109.48935 * 298.42917 * 15 14 13 34 34 H 1.09000 * 109.50488 * 178.37824 * 15 14 13 35 35 H 1.07991 * 120.83119 * 0.02562 * 18 17 16 36 36 H 1.07994 * 120.39839 * 180.02562 * 19 18 17 37 37 H 1.08000 * 119.07690 * 180.02562 * 21 20 19 38 38 H 1.08996 * 109.49039 * 299.35640 * 23 16 15 39 39 H 1.09004 * 109.50867 * 179.29482 * 23 16 15 40 40 H 1.08996 * 109.48604 * 303.15839 * 24 13 3 41 41 H 1.09004 * 109.48422 * 63.19585 * 24 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6287 1.9733 0.8586 5 6 3.5446 1.4434 0.0825 6 1 4.1349 1.5109 -0.8193 7 6 4.1679 1.3579 1.3095 8 7 3.4522 1.3711 2.4128 9 14 6.0286 1.2233 1.4047 10 1 6.5961 1.2290 0.0324 11 1 6.5697 2.3754 2.1695 12 1 6.3990 -0.0422 2.0878 13 7 1.6171 2.1114 -1.2377 14 6 2.1774 1.4386 -2.4178 15 6 1.6508 2.1153 -3.6855 16 7 2.0207 3.5373 -3.6685 17 6 1.6220 4.1682 -4.8356 18 6 2.0421 3.6910 -6.0793 19 6 1.6170 4.3542 -7.2133 20 7 0.8299 5.4135 -7.0863 21 6 0.4508 5.8391 -5.8983 22 7 0.8283 5.2340 -4.7902 23 6 1.4603 4.2102 -2.4883 24 6 1.9870 3.5336 -1.2205 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8932 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 2.4836 1.3647 2.3627 31 1 3.2650 1.5078 -2.3937 32 1 1.8793 0.3901 -2.4145 33 1 0.5654 2.0222 -3.7233 34 1 2.0875 1.6364 -4.5620 35 1 2.6826 2.8246 -6.1521 36 1 1.9214 4.0137 -8.1919 37 1 -0.1911 6.7050 -5.8312 38 1 0.3729 4.1410 -2.5124 39 1 1.7583 5.2587 -2.4914 40 1 1.5500 4.0124 -0.3443 41 1 3.0724 3.6265 -1.1824 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255174652.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:23 Heat of formation + Delta-G solvation = 64.835921 kcal Electronic energy + Delta-G solvation = -21992.236251 eV Core-core repulsion = 18907.440819 eV Total energy + Delta-G solvation = -3084.795432 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.19503 -38.96105 -36.43943 -33.53015 -32.78005 -31.81086 -30.78248 -30.48318 -27.21999 -25.10789 -24.71417 -23.25821 -22.87749 -22.48283 -20.14284 -19.25748 -17.92101 -17.41404 -16.68907 -15.59280 -15.30706 -15.18243 -14.68628 -14.39199 -14.20045 -13.88082 -13.79481 -13.60561 -13.46042 -12.73179 -12.54877 -12.04573 -11.80626 -11.24938 -11.07930 -10.97342 -10.83510 -10.78841 -10.68665 -10.54517 -10.26676 -10.14624 -10.02053 -9.78840 -9.63594 -9.29466 -9.02916 -8.42340 -8.39382 -7.15752 -6.39792 -4.16605 0.91965 1.07234 3.39263 3.41054 3.41346 3.54621 3.80102 4.13666 4.22712 4.46261 4.73149 4.82799 5.04952 5.13461 5.28943 5.35328 5.40673 5.46032 5.62388 5.65022 5.86804 5.91845 6.02152 6.11941 6.12861 6.19543 6.30307 6.43735 6.54624 6.61902 6.76591 6.76924 6.82176 7.01740 7.09241 7.16160 7.25840 7.29729 7.83117 8.03988 8.10588 8.20220 8.46210 8.77722 9.57345 10.95179 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.024161 B = 0.004661 C = 0.004324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.608137 B = 6005.356543 C = 6474.367467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.108 4.108 3 C 0.195 3.805 4 H 0.043 0.957 5 C -0.623 4.623 6 H 0.053 0.947 7 C 0.028 3.972 8 N -0.909 5.909 9 Si 1.066 2.934 10 H -0.290 1.290 11 H -0.287 1.287 12 H -0.287 1.287 13 N -0.531 5.531 14 C 0.057 3.943 15 C 0.067 3.933 16 N -0.470 5.470 17 C 0.365 3.635 18 C -0.247 4.247 19 C 0.158 3.842 20 N -0.552 5.552 21 C 0.318 3.682 22 N -0.558 5.558 23 C 0.072 3.928 24 C 0.063 3.937 25 H 0.054 0.946 26 H 0.029 0.971 27 H 0.041 0.959 28 H 0.045 0.955 29 H 0.054 0.946 30 H 0.271 0.729 31 H 0.053 0.947 32 H 0.080 0.920 33 H 0.050 0.950 34 H 0.079 0.921 35 H 0.146 0.854 36 H 0.165 0.835 37 H 0.193 0.807 38 H 0.054 0.946 39 H 0.081 0.919 40 H 0.073 0.927 41 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.647 3.062 -14.591 15.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.146 4.146 3 C 0.089 3.911 4 H 0.061 0.939 5 C -0.662 4.662 6 H 0.071 0.929 7 C -0.178 4.178 8 N -0.545 5.545 9 Si 0.895 3.105 10 H -0.217 1.217 11 H -0.214 1.214 12 H -0.214 1.214 13 N -0.256 5.256 14 C -0.072 4.072 15 C -0.059 4.059 16 N -0.187 5.187 17 C 0.124 3.876 18 C -0.273 4.273 19 C -0.004 4.004 20 N -0.269 5.269 21 C 0.028 3.972 22 N -0.279 5.279 23 C -0.055 4.055 24 C -0.066 4.066 25 H 0.073 0.927 26 H 0.049 0.951 27 H 0.060 0.940 28 H 0.064 0.936 29 H 0.072 0.928 30 H 0.083 0.917 31 H 0.071 0.929 32 H 0.098 0.902 33 H 0.068 0.932 34 H 0.097 0.903 35 H 0.163 0.837 36 H 0.182 0.818 37 H 0.209 0.791 38 H 0.073 0.927 39 H 0.100 0.900 40 H 0.091 0.909 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -3.946 3.712 -13.366 14.422 hybrid contribution -0.378 -0.630 -1.057 1.287 sum -4.324 3.081 -14.423 15.369 Atomic orbital electron populations 1.21741 0.98001 0.98935 1.01259 1.21695 0.93118 0.99388 1.00431 1.19454 0.94094 0.90324 0.87256 0.93903 1.22498 0.92159 1.56086 0.95419 0.92854 1.25695 1.06648 0.93223 0.92197 1.70743 1.08394 1.45990 1.29342 0.83578 0.74752 0.77004 0.75116 1.21654 1.21387 1.21372 1.62676 1.57810 1.01508 1.03582 1.22065 0.98938 0.97685 0.88497 1.22457 0.99375 0.83739 1.00320 1.58987 1.54036 1.04736 1.00922 1.20318 0.86262 0.89989 0.91057 1.22384 1.06634 1.05411 0.92843 1.22963 0.89768 0.88988 0.98722 1.68411 1.15198 1.14995 1.28301 1.24759 0.93508 0.96511 0.82429 1.68461 1.13781 1.11841 1.33814 1.22204 0.98113 0.97724 0.87447 1.21966 1.00001 0.89739 0.94903 0.92731 0.95141 0.93959 0.93643 0.92774 0.91696 0.92853 0.90180 0.93166 0.90259 0.83652 0.81775 0.79086 0.92714 0.90037 0.90894 0.92951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.60 9.79 37.16 0.36 -2.23 16 2 C -0.11 -2.29 5.18 -26.73 -0.14 -2.43 16 3 C 0.20 4.50 1.49 -68.86 -0.10 4.40 16 4 H 0.04 1.11 6.65 -51.93 -0.35 0.77 16 5 C -0.62 -16.04 6.86 -34.44 -0.24 -16.28 16 6 H 0.05 1.41 6.01 -52.49 -0.32 1.09 16 7 C 0.03 0.76 5.45 -17.82 -0.10 0.66 16 8 N -0.91 -26.11 13.63 55.43 0.76 -25.36 16 9 Si 1.07 24.56 29.91 -169.99 -5.08 19.47 16 10 H -0.29 -6.45 7.11 56.52 0.40 -6.04 16 11 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 12 H -0.29 -6.54 7.11 56.52 0.40 -6.13 16 13 N -0.53 -10.54 4.08 -227.87 -0.93 -11.47 16 14 C 0.06 1.02 4.97 -3.77 -0.02 1.00 16 15 C 0.07 0.99 5.37 -3.77 -0.02 0.97 16 16 N -0.47 -7.39 4.73 -172.87 -0.82 -8.21 16 17 C 0.36 5.27 6.41 -154.79 -0.99 4.28 16 18 C -0.25 -2.92 9.30 -39.10 -0.36 -3.29 16 19 C 0.16 1.69 11.29 -17.29 -0.20 1.49 16 20 N -0.55 -6.74 10.43 -14.67 -0.15 -6.89 16 21 C 0.32 3.88 12.28 -92.19 -1.13 2.74 16 22 N -0.56 -8.02 8.88 -13.81 -0.12 -8.14 16 23 C 0.07 1.19 4.80 -3.77 -0.02 1.17 16 24 C 0.06 1.21 5.33 -3.77 -0.02 1.19 16 25 H 0.05 0.97 7.70 -51.93 -0.40 0.57 16 26 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.04 0.93 6.19 -51.93 -0.32 0.61 16 29 H 0.05 1.27 8.14 -51.93 -0.42 0.84 16 30 H 0.27 7.75 6.66 -40.82 -0.27 7.48 16 31 H 0.05 1.08 6.24 -51.93 -0.32 0.76 16 32 H 0.08 1.40 6.10 -51.93 -0.32 1.08 16 33 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.08 0.98 6.86 -51.93 -0.36 0.63 16 35 H 0.15 1.45 7.26 -52.49 -0.38 1.07 16 36 H 0.17 1.17 8.06 -52.49 -0.42 0.74 16 37 H 0.19 1.70 8.06 -52.49 -0.42 1.28 16 38 H 0.05 0.93 8.06 -51.93 -0.42 0.51 16 39 H 0.08 1.33 7.85 -51.93 -0.41 0.92 16 40 H 0.07 1.43 8.12 -51.93 -0.42 1.01 16 41 H 0.05 1.14 7.36 -51.93 -0.38 0.76 16 LS Contribution 321.23 15.07 4.84 4.84 Total: -1.00 -29.09 321.23 -10.48 -39.57 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: -5.99 Total: 2.51 kcal Atomic # 6 Polarization: -3.35 SS G_CDS: -2.97 Total: -6.32 kcal Atomic # 7 Polarization: -58.80 SS G_CDS: -1.27 Total: -60.07 kcal Atomic # 14 Polarization: 24.56 SS G_CDS: -5.08 Total: 19.47 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -29.09 -10.48 -39.57 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255174652.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.404 kcal (2) G-P(sol) polarization free energy of solvation -29.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.568 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds