Wall clock time and date at job start Mon Mar 30 2020 01:40:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86804 * 119.99958 * 2 1 4 4 H 1.48500 * 109.47343 * 239.99793 * 3 2 1 5 5 H 1.48502 * 109.47158 * 0.02562 * 3 2 1 6 6 H 1.48512 * 109.46744 * 119.99920 * 3 2 1 7 7 C 1.37873 * 120.00098 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00007 * 180.02562 * 7 2 1 9 9 C 1.50708 * 119.99943 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47111 * 179.97438 * 9 7 2 11 11 N 1.46899 * 109.46932 * 180.02562 * 10 9 7 12 12 C 1.46901 * 110.99770 * 180.02562 * 11 10 9 13 13 C 1.53120 * 109.52428 * 155.00180 * 12 11 10 14 14 C 1.53030 * 109.27763 * 177.55650 * 13 12 11 15 15 N 1.46847 * 109.52694 * 300.81806 * 14 13 12 16 16 C 1.38405 * 111.00207 * 185.84043 * 15 14 13 17 17 N 1.32501 * 119.21666 * 359.72869 * 16 15 14 18 18 C 1.32274 * 120.74204 * 180.27404 * 17 16 15 19 19 C 1.38612 * 119.19367 * 0.02562 * 18 17 16 20 20 C 1.38599 * 118.55845 * 359.97438 * 19 18 17 21 21 N 1.32271 * 119.20254 * 359.97438 * 20 19 18 22 22 C 1.46851 * 111.19619 * 61.74581 * 15 14 13 23 23 C 1.53039 * 109.51961 * 298.25854 * 22 15 14 24 24 H 0.96996 * 119.99721 * 0.02562 * 1 2 3 25 25 H 1.09003 * 109.46741 * 60.00584 * 9 7 2 26 26 H 1.08995 * 109.47287 * 300.00482 * 9 7 2 27 27 H 1.09003 * 109.47057 * 59.99988 * 10 9 7 28 28 H 1.08996 * 109.47013 * 300.00421 * 10 9 7 29 29 H 1.00894 * 110.99701 * 56.04808 * 11 10 9 30 30 H 1.08999 * 109.57703 * 34.83838 * 12 11 10 31 31 H 1.09001 * 109.50361 * 57.61571 * 13 12 11 32 32 H 1.09004 * 109.49876 * 297.50305 * 13 12 11 33 33 H 1.09008 * 109.46076 * 180.80156 * 14 13 12 34 34 H 1.09003 * 109.46381 * 60.83507 * 14 13 12 35 35 H 1.07993 * 120.40089 * 180.02562 * 18 17 16 36 36 H 1.08000 * 120.71964 * 179.97438 * 19 18 17 37 37 H 1.08005 * 120.40156 * 179.97438 * 20 19 18 38 38 H 1.09001 * 109.46123 * 58.27000 * 22 15 14 39 39 H 1.08991 * 109.46050 * 178.24292 * 22 15 14 40 40 H 1.08997 * 109.50379 * 299.23838 * 23 22 15 41 41 H 1.09002 * 109.50133 * 179.12223 * 23 22 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1030 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0018 11 7 1.5107 -4.9343 -0.0024 12 6 2.4352 -6.0759 -0.0031 13 6 1.7408 -7.2970 0.6062 14 6 2.6872 -8.4982 0.5471 15 7 3.0528 -8.7668 -0.8495 16 6 3.8030 -9.9253 -0.9519 17 7 4.0906 -10.6088 0.1463 18 6 4.8100 -11.7170 0.0840 19 6 5.2641 -12.1600 -1.1485 20 6 4.9451 -11.4210 -2.2768 21 7 4.2208 -10.3220 -2.1450 22 6 3.7631 -7.6259 -1.4414 23 6 2.8487 -6.3986 -1.4416 24 1 -0.4849 0.8400 -0.0004 25 1 0.6241 -2.5567 -0.8904 26 1 0.6246 -2.5571 0.8896 27 1 2.8726 -3.6047 0.8877 28 1 2.8712 -3.6039 -0.8922 29 1 0.8740 -4.9837 -0.7836 30 1 3.3202 -5.8295 0.5837 31 1 0.8349 -7.5195 0.0424 32 1 1.4821 -7.0882 1.6443 33 1 2.1906 -9.3728 0.9673 34 1 3.5870 -8.2803 1.1225 35 1 5.0407 -12.2700 0.9825 36 1 5.8537 -13.0613 -1.2278 37 1 5.2838 -11.7386 -3.2519 38 1 4.6577 -7.4121 -0.8565 39 1 4.0477 -7.8669 -2.4654 40 1 1.9602 -6.6069 -2.0376 41 1 3.3816 -5.5480 -1.8667 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001256050905.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:10 Heat of formation + Delta-G solvation = 57.486165 kcal Electronic energy + Delta-G solvation = -20728.576171 eV Core-core repulsion = 17643.462030 eV Total energy + Delta-G solvation = -3085.114141 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.48857 -39.10184 -36.12415 -34.04071 -33.50183 -32.17964 -30.96867 -30.42778 -28.25021 -25.13981 -24.80499 -23.56479 -22.85942 -22.04343 -20.69918 -19.74546 -18.17128 -17.64030 -16.33508 -16.11899 -15.73542 -15.17718 -14.76742 -14.62012 -14.44666 -14.37139 -13.91057 -13.65607 -13.57370 -13.21342 -12.52015 -12.23128 -12.18536 -11.41307 -11.38194 -11.18262 -11.12549 -11.09638 -10.92655 -10.75516 -10.63819 -10.42817 -10.31675 -9.96993 -9.44458 -9.32031 -9.13297 -8.59995 -8.33601 -7.76091 -5.98015 -4.00693 0.66923 0.83222 2.93132 3.34354 3.38735 3.40991 3.50042 3.87167 4.30177 4.42518 4.43575 4.61375 4.77791 4.83291 4.86354 4.90981 5.09750 5.24789 5.28255 5.37768 5.44180 5.51692 5.62796 5.72025 5.81121 5.84905 5.90403 6.10499 6.23246 6.33856 6.39008 6.45036 6.53348 6.59393 6.99891 7.02701 7.51626 7.75235 7.84948 7.89326 7.98701 8.10896 8.45335 9.06466 9.62930 11.13374 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.047647 B = 0.002721 C = 0.002665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 587.516225 B =10288.998853 C =10504.833842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.522 4.522 8 H 0.053 0.947 9 C 0.025 3.975 10 C 0.066 3.934 11 N -0.685 5.685 12 C 0.084 3.916 13 C -0.107 4.107 14 C 0.072 3.928 15 N -0.458 5.458 16 C 0.497 3.503 17 N -0.552 5.552 18 C 0.173 3.827 19 C -0.269 4.269 20 C 0.174 3.826 21 N -0.533 5.533 22 C 0.074 3.926 23 C -0.148 4.148 24 H 0.261 0.739 25 H 0.014 0.986 26 H 0.025 0.975 27 H 0.057 0.943 28 H 0.015 0.985 29 H 0.338 0.662 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.082 0.918 33 H 0.087 0.913 34 H 0.052 0.948 35 H 0.167 0.833 36 H 0.145 0.855 37 H 0.169 0.831 38 H 0.043 0.957 39 H 0.091 0.909 40 H 0.076 0.924 41 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.264 -25.206 -2.220 27.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.144 4.144 3 Si 0.720 3.280 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.561 4.561 8 H 0.071 0.929 9 C -0.012 4.012 10 C -0.062 4.062 11 N -0.314 5.314 12 C -0.027 4.027 13 C -0.146 4.146 14 C -0.055 4.055 15 N -0.178 5.178 16 C 0.141 3.859 17 N -0.272 5.272 18 C 0.006 3.994 19 C -0.293 4.293 20 C 0.006 3.994 21 N -0.251 5.251 22 C -0.052 4.052 23 C -0.187 4.187 24 H 0.071 0.929 25 H 0.032 0.968 26 H 0.043 0.957 27 H 0.075 0.925 28 H 0.033 0.967 29 H 0.156 0.844 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.100 0.900 33 H 0.106 0.894 34 H 0.070 0.930 35 H 0.184 0.816 36 H 0.163 0.837 37 H 0.186 0.814 38 H 0.062 0.938 39 H 0.110 0.890 40 H 0.095 0.905 41 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 8.979 -24.186 -1.706 25.855 hybrid contribution 1.895 0.111 -0.698 2.023 sum 10.875 -24.074 -2.404 26.526 Atomic orbital electron populations 1.69962 1.06018 1.26688 1.50563 1.25002 0.94844 0.99189 0.95323 0.86655 0.79570 0.83162 0.78572 1.20307 1.21266 1.20239 1.21141 0.92913 0.91067 1.50982 0.92866 1.19065 0.94031 0.90418 0.97711 1.22182 0.96990 0.88538 0.98498 1.60658 1.19175 1.01818 1.49756 1.21651 0.95514 0.91652 0.93899 1.21672 0.98325 0.92199 1.02397 1.22104 0.99402 0.99448 0.84550 1.58369 1.37355 1.01238 1.20789 1.21172 0.87283 0.92862 0.84553 1.68435 1.17162 1.10002 1.31635 1.23081 0.88441 0.89980 0.97909 1.22709 1.07092 1.04338 0.95170 1.23104 0.89081 0.87840 0.99394 1.68053 1.14142 1.17183 1.25710 1.22142 0.94665 0.88067 1.00335 1.22433 1.00420 0.96221 0.99662 0.92935 0.96814 0.95668 0.92484 0.96651 0.84406 0.90977 0.90978 0.89980 0.89438 0.93012 0.81593 0.83705 0.81430 0.93834 0.89036 0.90512 0.90539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.13 13.29 55.43 0.74 -26.40 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 21.82 29.54 -169.99 -5.02 16.80 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.52 -14.93 9.11 -34.44 -0.31 -15.24 16 8 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 9 C 0.03 0.66 5.23 -27.88 -0.15 0.51 16 10 C 0.07 1.38 5.43 -3.82 -0.02 1.36 16 11 N -0.68 -12.08 6.25 -106.59 -0.67 -12.75 16 12 C 0.08 1.20 2.53 -67.59 -0.17 1.03 16 13 C -0.11 -1.37 5.70 -26.65 -0.15 -1.53 16 14 C 0.07 0.87 4.63 -3.84 -0.02 0.85 16 15 N -0.46 -5.88 4.72 -175.42 -0.83 -6.71 16 16 C 0.50 6.29 7.17 -322.80 -2.32 3.97 16 17 N -0.55 -6.34 8.68 -13.93 -0.12 -6.46 16 18 C 0.17 1.40 11.30 -17.22 -0.19 1.20 16 19 C -0.27 -1.77 10.16 -39.31 -0.40 -2.17 16 20 C 0.17 1.42 11.30 -17.23 -0.19 1.22 16 21 N -0.53 -6.31 9.66 -13.93 -0.13 -6.44 16 22 C 0.07 0.91 5.33 -3.83 -0.02 0.89 16 23 C -0.15 -1.93 5.35 -26.65 -0.14 -2.07 16 24 H 0.26 7.48 8.31 -40.82 -0.34 7.15 16 25 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.02 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.06 1.21 8.06 -51.93 -0.42 0.79 16 28 H 0.02 0.31 7.51 -51.93 -0.39 -0.08 16 29 H 0.34 5.84 8.45 -39.30 -0.33 5.51 16 30 H 0.07 1.08 7.80 -51.93 -0.41 0.67 16 31 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.09 1.04 7.69 -51.92 -0.40 0.65 16 34 H 0.05 0.63 8.10 -51.93 -0.42 0.21 16 35 H 0.17 0.78 8.06 -52.49 -0.42 0.35 16 36 H 0.15 0.48 8.06 -52.49 -0.42 0.05 16 37 H 0.17 0.79 8.06 -52.48 -0.42 0.37 16 38 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.09 1.12 7.55 -51.93 -0.39 0.73 16 40 H 0.08 1.02 8.10 -51.93 -0.42 0.60 16 41 H 0.08 1.03 7.54 -51.93 -0.39 0.64 16 LS Contribution 333.88 15.07 5.03 5.03 Total: -1.00 -32.43 333.88 -11.68 -44.12 By element: Atomic # 1 Polarization: 7.68 SS G_CDS: -6.49 Total: 1.19 kcal Atomic # 6 Polarization: -4.19 SS G_CDS: -4.19 Total: -8.38 kcal Atomic # 7 Polarization: -57.74 SS G_CDS: -1.01 Total: -58.76 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -32.43 -11.68 -44.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001256050905.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.601 kcal (2) G-P(sol) polarization free energy of solvation -32.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.115 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds