Wall clock time and date at job start Mon Mar 30 2020 01:40:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86804 * 119.99958 * 2 1 4 4 H 1.48500 * 109.47343 * 239.99793 * 3 2 1 5 5 H 1.48502 * 109.47158 * 0.02562 * 3 2 1 6 6 H 1.48512 * 109.46744 * 119.99920 * 3 2 1 7 7 C 1.37873 * 120.00098 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00007 * 180.02562 * 7 2 1 9 9 C 1.50708 * 119.99943 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47111 * 179.97438 * 9 7 2 11 11 N 1.46899 * 109.46932 * 180.02562 * 10 9 7 12 12 C 1.46901 * 110.99770 * 180.02562 * 11 10 9 13 13 C 1.53120 * 109.52428 * 155.00180 * 12 11 10 14 14 C 1.53030 * 109.27763 * 177.55650 * 13 12 11 15 15 N 1.46847 * 109.52694 * 300.81806 * 14 13 12 16 16 C 1.38405 * 111.00207 * 185.84043 * 15 14 13 17 17 N 1.32501 * 119.21666 * 359.72869 * 16 15 14 18 18 C 1.32274 * 120.74204 * 180.27404 * 17 16 15 19 19 C 1.38612 * 119.19367 * 0.02562 * 18 17 16 20 20 C 1.38599 * 118.55845 * 359.97438 * 19 18 17 21 21 N 1.32271 * 119.20254 * 359.97438 * 20 19 18 22 22 C 1.46851 * 111.19619 * 61.74581 * 15 14 13 23 23 C 1.53039 * 109.51961 * 298.25854 * 22 15 14 24 24 H 0.96996 * 119.99721 * 0.02562 * 1 2 3 25 25 H 1.09003 * 109.46741 * 60.00584 * 9 7 2 26 26 H 1.08995 * 109.47287 * 300.00482 * 9 7 2 27 27 H 1.09003 * 109.47057 * 59.99988 * 10 9 7 28 28 H 1.08996 * 109.47013 * 300.00421 * 10 9 7 29 29 H 1.00894 * 110.99701 * 56.04808 * 11 10 9 30 30 H 1.08999 * 109.57703 * 34.83838 * 12 11 10 31 31 H 1.09001 * 109.50361 * 57.61571 * 13 12 11 32 32 H 1.09004 * 109.49876 * 297.50305 * 13 12 11 33 33 H 1.09008 * 109.46076 * 180.80156 * 14 13 12 34 34 H 1.09003 * 109.46381 * 60.83507 * 14 13 12 35 35 H 1.07993 * 120.40089 * 180.02562 * 18 17 16 36 36 H 1.08000 * 120.71964 * 179.97438 * 19 18 17 37 37 H 1.08005 * 120.40156 * 179.97438 * 20 19 18 38 38 H 1.09001 * 109.46123 * 58.27000 * 22 15 14 39 39 H 1.08991 * 109.46050 * 178.24292 * 22 15 14 40 40 H 1.08997 * 109.50379 * 299.23838 * 23 22 15 41 41 H 1.09002 * 109.50133 * 179.12223 * 23 22 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1030 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0018 11 7 1.5107 -4.9343 -0.0024 12 6 2.4352 -6.0759 -0.0031 13 6 1.7408 -7.2970 0.6062 14 6 2.6872 -8.4982 0.5471 15 7 3.0528 -8.7668 -0.8495 16 6 3.8030 -9.9253 -0.9519 17 7 4.0906 -10.6088 0.1463 18 6 4.8100 -11.7170 0.0840 19 6 5.2641 -12.1600 -1.1485 20 6 4.9451 -11.4210 -2.2768 21 7 4.2208 -10.3220 -2.1450 22 6 3.7631 -7.6259 -1.4414 23 6 2.8487 -6.3986 -1.4416 24 1 -0.4849 0.8400 -0.0004 25 1 0.6241 -2.5567 -0.8904 26 1 0.6246 -2.5571 0.8896 27 1 2.8726 -3.6047 0.8877 28 1 2.8712 -3.6039 -0.8922 29 1 0.8740 -4.9837 -0.7836 30 1 3.3202 -5.8295 0.5837 31 1 0.8349 -7.5195 0.0424 32 1 1.4821 -7.0882 1.6443 33 1 2.1906 -9.3728 0.9673 34 1 3.5870 -8.2803 1.1225 35 1 5.0407 -12.2700 0.9825 36 1 5.8537 -13.0613 -1.2278 37 1 5.2838 -11.7386 -3.2519 38 1 4.6577 -7.4121 -0.8565 39 1 4.0477 -7.8669 -2.4654 40 1 1.9602 -6.6069 -2.0376 41 1 3.3816 -5.5480 -1.8667 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001256050905.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:09 Heat of formation + Delta-G solvation = 36.624400 kcal Electronic energy + Delta-G solvation = -20729.480805 eV Core-core repulsion = 17643.462030 eV Total energy + Delta-G solvation = -3086.018775 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.23564 -40.10042 -37.44542 -35.33168 -34.75103 -33.62428 -31.97183 -31.61649 -29.82341 -26.47674 -25.77778 -24.83315 -23.82444 -23.10447 -22.46999 -20.91862 -18.97735 -18.50223 -18.37735 -16.97556 -16.56418 -16.49083 -16.15022 -15.92847 -15.53821 -15.51644 -15.09749 -14.67158 -14.45971 -14.36096 -14.21333 -13.88476 -13.34463 -13.09907 -12.82834 -12.66238 -12.38487 -12.32383 -12.12279 -11.91774 -11.87693 -11.74063 -11.65504 -11.37222 -11.12740 -11.09775 -10.55397 -10.15468 -9.41255 -9.22153 -8.19537 -6.31141 -0.00867 0.20835 1.40383 1.43745 1.51666 2.13015 2.40876 2.80646 3.13711 3.21167 3.28228 3.58467 3.79201 3.83326 3.86466 4.05249 4.18409 4.23633 4.31090 4.39638 4.47803 4.51118 4.52899 4.63172 4.72039 4.78641 4.81431 4.93535 4.99572 5.09079 5.17466 5.27428 5.36132 5.46363 5.64113 5.69551 5.76640 5.80275 6.15944 6.28768 6.29985 6.55811 6.86240 7.16872 7.38024 8.92425 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.047647 B = 0.002721 C = 0.002665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 587.516225 B =10288.998853 C =10504.833842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.000 4.000 3 Si 0.967 3.033 4 H -0.266 1.266 5 H -0.283 1.283 6 H -0.267 1.267 7 C -0.545 4.545 8 H 0.060 0.940 9 C 0.032 3.968 10 C 0.086 3.914 11 N -0.690 5.690 12 C 0.086 3.914 13 C -0.098 4.098 14 C 0.085 3.915 15 N -0.471 5.471 16 C 0.472 3.528 17 N -0.574 5.574 18 C 0.159 3.841 19 C -0.248 4.248 20 C 0.159 3.841 21 N -0.560 5.560 22 C 0.084 3.916 23 C -0.138 4.138 24 H 0.264 0.736 25 H -0.009 1.009 26 H -0.007 1.007 27 H 0.056 0.944 28 H 0.021 0.979 29 H 0.340 0.660 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.082 0.918 33 H 0.089 0.911 34 H 0.048 0.952 35 H 0.199 0.801 36 H 0.185 0.815 37 H 0.200 0.800 38 H 0.041 0.959 39 H 0.091 0.909 40 H 0.074 0.926 41 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.308 -26.700 -2.431 29.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.198 4.198 3 Si 0.791 3.209 4 H -0.191 1.191 5 H -0.208 1.208 6 H -0.192 1.192 7 C -0.584 4.584 8 H 0.078 0.922 9 C -0.006 4.006 10 C -0.043 4.043 11 N -0.319 5.319 12 C -0.024 4.024 13 C -0.137 4.137 14 C -0.042 4.042 15 N -0.191 5.191 16 C 0.116 3.884 17 N -0.295 5.295 18 C -0.007 4.007 19 C -0.271 4.271 20 C -0.007 4.007 21 N -0.279 5.279 22 C -0.042 4.042 23 C -0.178 4.178 24 H 0.073 0.927 25 H 0.010 0.990 26 H 0.012 0.988 27 H 0.074 0.926 28 H 0.039 0.961 29 H 0.158 0.842 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.100 0.900 33 H 0.107 0.893 34 H 0.067 0.933 35 H 0.215 0.785 36 H 0.203 0.797 37 H 0.216 0.784 38 H 0.060 0.940 39 H 0.109 0.891 40 H 0.093 0.907 41 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 11.050 -25.733 -1.921 28.071 hybrid contribution 1.296 0.402 -0.641 1.501 sum 12.347 -25.331 -2.562 28.296 Atomic orbital electron populations 1.70103 1.07827 1.27859 1.51375 1.25985 0.95777 1.03392 0.94652 0.85481 0.78247 0.77990 0.79193 1.19105 1.20810 1.19170 1.21591 0.93521 0.92285 1.50973 0.92154 1.18920 0.94329 0.92311 0.95024 1.21784 0.95556 0.88321 0.98644 1.60574 1.19726 1.01506 1.50103 1.21679 0.94874 0.90858 0.94968 1.21569 0.98230 0.91786 1.02099 1.21927 0.98852 0.98781 0.84665 1.58373 1.38299 1.01580 1.20806 1.21180 0.88746 0.93155 0.85346 1.68410 1.18188 1.11372 1.31484 1.23754 0.87689 0.89299 0.99972 1.23138 1.05408 1.04649 0.93863 1.23770 0.88354 0.87048 1.01517 1.68032 1.15299 1.18972 1.25625 1.21986 0.94210 0.87703 1.00323 1.22296 1.00469 0.96600 0.98431 0.92741 0.99048 0.98808 0.92598 0.96091 0.84201 0.91277 0.91314 0.89984 0.89312 0.93346 0.78459 0.79740 0.78363 0.94043 0.89074 0.90728 0.90950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.64 13.29 21.45 0.28 -57.35 16 2 C 0.00 0.00 5.46 84.65 0.46 0.46 16 3 Si 0.97 44.69 29.54 68.60 2.03 46.72 16 4 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 5 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 6 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 7 C -0.55 -31.53 9.11 25.60 0.23 -31.30 16 8 H 0.06 3.32 7.74 -2.91 -0.02 3.30 16 9 C 0.03 1.71 5.23 29.85 0.16 1.87 16 10 C 0.09 3.64 5.43 86.30 0.47 4.11 16 11 N -0.69 -24.68 6.25 -491.15 -3.07 -27.75 16 12 C 0.09 2.48 2.53 45.00 0.11 2.59 16 13 C -0.10 -2.51 5.70 30.64 0.17 -2.33 16 14 C 0.09 2.04 4.63 86.32 0.40 2.43 16 15 N -0.47 -12.00 4.72 -708.92 -3.34 -15.34 16 16 C 0.47 11.64 7.17 261.48 1.88 13.52 16 17 N -0.57 -12.50 8.68 -197.98 -1.72 -14.22 16 18 C 0.16 2.16 11.30 84.72 0.96 3.11 16 19 C -0.25 -2.42 10.16 22.45 0.23 -2.20 16 20 C 0.16 2.22 11.30 84.71 0.96 3.18 16 21 N -0.56 -12.69 9.66 -197.99 -1.91 -14.61 16 22 C 0.08 2.07 5.33 86.33 0.46 2.53 16 23 C -0.14 -3.61 5.35 30.65 0.16 -3.44 16 24 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 25 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 26 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 27 H 0.06 2.38 8.06 -2.39 -0.02 2.36 16 28 H 0.02 0.86 7.51 -2.39 -0.02 0.84 16 29 H 0.34 11.98 8.45 -89.70 -0.76 11.22 16 30 H 0.07 2.05 7.80 -2.39 -0.02 2.03 16 31 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 32 H 0.08 2.09 8.14 -2.38 -0.02 2.07 16 33 H 0.09 2.10 7.69 -2.38 -0.02 2.08 16 34 H 0.05 1.18 8.10 -2.39 -0.02 1.16 16 35 H 0.20 1.20 8.06 -2.91 -0.02 1.18 16 36 H 0.19 0.28 8.06 -2.91 -0.02 0.26 16 37 H 0.20 1.27 8.06 -2.91 -0.02 1.25 16 38 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 39 H 0.09 2.23 7.55 -2.39 -0.02 2.21 16 40 H 0.07 1.98 8.10 -2.39 -0.02 1.96 16 41 H 0.07 1.94 7.54 -2.39 -0.02 1.92 16 Total: -1.00 -71.21 333.88 -0.83 -72.04 By element: Atomic # 1 Polarization: 15.72 SS G_CDS: 0.25 Total: 15.97 kcal Atomic # 6 Polarization: -12.12 SS G_CDS: 6.65 Total: -5.47 kcal Atomic # 7 Polarization: -119.50 SS G_CDS: -9.76 Total: -129.26 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.72 kcal Total: -71.21 -0.83 -72.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001256050905.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.667 kcal (2) G-P(sol) polarization free energy of solvation -71.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.043 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds