Wall clock time and date at job start Mon Mar 30 2020 02:07:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.47012 * 2 1 4 4 C 1.50702 * 109.46987 * 119.99875 * 2 1 3 5 5 C 1.34665 * 126.59101 * 325.04227 * 4 2 1 6 6 N 1.34127 * 108.01901 * 179.97438 * 5 4 2 7 7 C 1.30496 * 109.25626 * 359.97438 * 6 5 4 8 8 C 1.50706 * 125.65059 * 180.02562 * 7 6 5 9 9 N 1.46899 * 109.47074 * 275.24758 * 8 7 6 10 10 C 1.46903 * 110.99915 * 163.90846 * 9 8 7 11 11 C 1.50696 * 109.46902 * 189.99942 * 10 9 8 12 12 H 1.07995 * 120.00346 * 0.02562 * 11 10 9 13 13 C 1.37878 * 119.99971 * 179.97438 * 11 10 9 14 14 N 1.31520 * 119.99831 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 120.00134 * 180.02562 * 13 11 10 16 16 H 1.48490 * 109.47233 * 60.00095 * 15 13 11 17 17 H 1.48502 * 109.47095 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.46953 * 299.99868 * 15 13 11 19 19 C 1.46892 * 110.99956 * 287.86443 * 9 8 7 20 20 C 1.52997 * 109.47133 * 295.31981 * 19 9 8 21 21 C 1.47202 * 109.47135 * 177.07773 * 20 19 9 22 22 N 6.78608 * 170.96216 * 177.19348 * 2 1 3 23 23 N 1.35040 * 108.70140 * 0.02562 * 7 6 5 24 24 H 0.96999 * 126.39836 * 180.26185 * 23 7 6 25 25 H 1.08999 * 109.47015 * 60.00051 * 1 2 3 26 26 H 1.09002 * 109.46872 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47186 * 299.99887 * 1 2 3 28 28 H 1.09003 * 109.46857 * 239.99765 * 2 1 3 29 29 H 1.09007 * 109.47160 * 179.97438 * 3 2 1 30 30 H 1.08999 * 109.47189 * 299.99842 * 3 2 1 31 31 H 1.08998 * 109.47053 * 60.00031 * 3 2 1 32 32 H 1.08004 * 125.98882 * 359.96797 * 5 4 2 33 33 H 1.08999 * 109.46926 * 35.24656 * 8 7 6 34 34 H 1.08994 * 109.46960 * 155.24665 * 8 7 6 35 35 H 1.09003 * 109.46923 * 309.99973 * 10 9 8 36 36 H 1.08999 * 109.46643 * 70.00095 * 10 9 8 37 37 H 0.96998 * 119.99980 * 180.02562 * 14 13 11 38 38 H 1.09002 * 109.47323 * 55.32217 * 19 9 8 39 39 H 1.09004 * 109.47074 * 175.31865 * 19 9 8 40 40 H 1.09001 * 109.47515 * 297.07509 * 20 19 9 41 41 H 1.08995 * 109.47530 * 57.07685 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2305 5 6 1.4644 -0.6999 2.4515 6 7 2.2180 -1.4534 3.2661 7 6 3.2310 -1.9307 2.5960 8 6 4.3092 -2.8247 3.1523 9 7 5.3497 -2.0021 3.7840 10 6 6.2064 -2.8159 4.6568 11 6 7.0967 -1.9125 5.4705 12 1 7.0323 -0.8410 5.3515 13 6 7.9928 -2.4538 6.3677 14 7 8.0709 -3.7586 6.5130 15 14 9.0960 -1.3339 7.3769 16 1 8.2585 -0.4312 8.2068 17 1 9.9621 -2.1565 8.2592 18 1 9.9447 -0.5240 6.4665 19 6 6.1478 -1.2955 2.7733 20 6 6.9125 -2.3131 1.9245 21 6 7.6572 -1.6095 0.8675 22 7 8.2319 -1.0647 0.0522 23 7 3.1530 -1.4910 1.3216 24 1 3.7730 -1.6940 0.6037 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 3.1301 1.4425 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 0.5606 -0.1765 2.7266 33 1 3.8773 -3.4966 3.8939 34 1 4.7490 -3.4094 2.3445 35 1 5.5836 -3.4104 5.3253 36 1 6.8208 -3.4786 4.0474 37 1 8.7011 -4.1394 7.1445 38 1 5.4876 -0.7108 2.1326 39 1 6.8554 -0.6308 3.2689 40 1 7.6103 -2.8623 2.5565 41 1 6.2081 -3.0099 1.4703 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001262110168.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:41 Heat of formation + Delta-G solvation = 76.321753 kcal Electronic energy + Delta-G solvation = -21225.586277 eV Core-core repulsion = 18141.288908 eV Total energy + Delta-G solvation = -3084.297369 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 2.25 seconds Orbital eigenvalues (eV) -41.96723 -37.93330 -36.10795 -35.56689 -32.74486 -32.22575 -30.95735 -29.35649 -27.41012 -26.88421 -25.30430 -23.58803 -22.66859 -20.91593 -20.30053 -19.27185 -17.74736 -17.14838 -16.32918 -15.64139 -14.95591 -14.84701 -14.66120 -14.41351 -14.21000 -13.80030 -13.65978 -13.53540 -13.05945 -12.99523 -12.37610 -12.28157 -12.19099 -12.10017 -11.78132 -11.58523 -11.39848 -11.28637 -11.22361 -11.16715 -10.80963 -10.66974 -10.37614 -9.98711 -9.74195 -9.62638 -9.36610 -8.50744 -8.05189 -7.48434 -6.10281 -4.11792 2.17741 2.94130 2.96950 3.18580 3.31682 3.36203 3.37144 3.41028 4.19013 4.38569 4.54549 4.68463 4.76158 4.92845 4.94464 5.19180 5.26569 5.27074 5.31274 5.41844 5.48307 5.55121 5.59335 5.60989 5.64937 5.75986 5.88133 5.97413 6.04721 6.08915 6.13883 6.43879 6.46912 6.94499 7.07450 7.10307 7.52029 7.67739 7.73281 7.89770 8.00647 8.36284 8.40597 8.94819 9.53324 11.00038 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.018944 B = 0.004458 C = 0.004009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1477.659900 B = 6279.293303 C = 6982.006220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.016 4.016 3 C -0.144 4.144 4 C -0.031 4.031 5 C -0.021 4.021 6 N -0.472 5.472 7 C 0.234 3.766 8 C 0.128 3.872 9 N -0.516 5.516 10 C 0.188 3.812 11 C -0.511 4.511 12 H 0.064 0.936 13 C 0.060 3.940 14 N -0.897 5.897 15 Si 0.895 3.105 16 H -0.275 1.275 17 H -0.288 1.288 18 H -0.278 1.278 19 C 0.072 3.928 20 C -0.076 4.076 21 C 0.221 3.779 22 N -0.458 5.458 23 N -0.567 5.567 24 H 0.412 0.588 25 H 0.059 0.941 26 H 0.057 0.943 27 H 0.062 0.938 28 H 0.071 0.929 29 H 0.053 0.947 30 H 0.058 0.942 31 H 0.061 0.939 32 H 0.162 0.838 33 H 0.105 0.895 34 H 0.046 0.954 35 H 0.038 0.962 36 H 0.003 0.997 37 H 0.263 0.737 38 H 0.056 0.944 39 H 0.095 0.905 40 H 0.128 0.872 41 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.970 3.229 -13.031 17.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.036 4.036 3 C -0.201 4.201 4 C -0.146 4.146 5 C -0.169 4.169 6 N -0.191 5.191 7 C -0.030 4.030 8 C -0.002 4.002 9 N -0.239 5.239 10 C 0.064 3.936 11 C -0.549 4.549 12 H 0.082 0.918 13 C -0.142 4.142 14 N -0.536 5.536 15 Si 0.723 3.277 16 H -0.201 1.201 17 H -0.214 1.214 18 H -0.203 1.203 19 C -0.059 4.059 20 C -0.118 4.118 21 C -0.096 4.096 22 N -0.135 5.135 23 N -0.170 5.170 24 H 0.248 0.752 25 H 0.078 0.922 26 H 0.077 0.923 27 H 0.081 0.919 28 H 0.089 0.911 29 H 0.072 0.928 30 H 0.077 0.923 31 H 0.081 0.919 32 H 0.180 0.820 33 H 0.123 0.877 34 H 0.064 0.936 35 H 0.056 0.944 36 H 0.021 0.979 37 H 0.073 0.927 38 H 0.074 0.926 39 H 0.114 0.886 40 H 0.146 0.854 41 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -11.451 4.104 -12.934 17.755 hybrid contribution 1.329 -0.214 -0.735 1.534 sum -10.122 3.890 -13.669 17.448 Atomic orbital electron populations 1.21788 0.93547 1.02252 1.02184 1.19486 0.96164 0.95091 0.92866 1.21855 1.01160 0.94972 1.02149 1.21093 0.92020 1.02663 0.98842 1.22013 1.01841 1.03779 0.89288 1.70285 1.04540 1.12489 1.31787 1.23302 0.98183 1.01218 0.80342 1.20516 0.89571 0.91874 0.98214 1.62299 1.13555 1.30761 1.17260 1.19911 0.90808 0.92148 0.90723 1.21058 1.18604 0.93557 1.21692 0.91809 1.24929 0.97314 0.95022 0.96943 1.69923 1.37013 1.10147 1.36485 0.86594 0.80376 0.80513 0.80183 1.20068 1.21370 1.20327 1.22084 0.95846 0.95652 0.92309 1.20286 0.99552 0.99569 0.92425 1.29314 0.93294 0.93388 0.93635 1.81183 1.10270 1.10161 1.11936 1.43249 1.22192 1.39488 1.12062 0.75155 0.92242 0.92339 0.91899 0.91096 0.92796 0.92291 0.91941 0.82036 0.87701 0.93644 0.94363 0.97933 0.92750 0.92568 0.88628 0.85388 0.88566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.04 8.79 37.16 0.33 -0.71 16 2 C -0.02 -0.14 3.38 -91.77 -0.31 -0.45 16 3 C -0.14 -1.24 9.17 37.16 0.34 -0.90 16 4 C -0.03 -0.37 6.16 -81.60 -0.50 -0.87 16 5 C -0.02 -0.29 11.06 -17.81 -0.20 -0.49 16 6 N -0.47 -8.15 11.25 -10.82 -0.12 -8.27 16 7 C 0.23 3.56 6.89 -155.42 -1.07 2.49 16 8 C 0.13 1.96 5.48 -4.97 -0.03 1.93 16 9 N -0.52 -9.47 4.65 -237.52 -1.10 -10.58 16 10 C 0.19 4.19 4.46 -4.98 -0.02 4.17 16 11 C -0.51 -13.01 8.52 -34.44 -0.29 -13.30 16 12 H 0.06 1.64 7.10 -52.49 -0.37 1.27 16 13 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 14 N -0.90 -24.73 13.29 55.43 0.74 -24.00 16 15 Si 0.90 20.79 29.54 -169.99 -5.02 15.77 16 16 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 17 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 18 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 19 C 0.07 1.15 4.97 -3.83 -0.02 1.13 16 20 C -0.08 -1.05 5.03 -29.52 -0.15 -1.19 16 21 C 0.22 3.31 15.44 -20.74 -0.32 2.99 16 22 N -0.46 -7.79 18.54 42.18 0.78 -7.01 16 23 N -0.57 -6.91 5.71 -6.54 -0.04 -6.94 16 24 H 0.41 3.97 8.96 -40.82 -0.37 3.61 16 25 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.06 0.46 7.32 -51.93 -0.38 0.08 16 28 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.16 1.94 7.40 -52.48 -0.39 1.55 16 33 H 0.10 1.69 7.81 -51.93 -0.41 1.28 16 34 H 0.05 0.56 5.91 -51.93 -0.31 0.26 16 35 H 0.04 0.94 7.86 -51.93 -0.41 0.53 16 36 H 0.00 0.07 6.04 -51.93 -0.31 -0.25 16 37 H 0.26 6.97 8.31 -40.82 -0.34 6.64 16 38 H 0.06 0.83 7.02 -51.93 -0.36 0.47 16 39 H 0.10 1.75 6.88 -51.93 -0.36 1.39 16 40 H 0.13 1.98 6.42 -51.93 -0.33 1.65 16 41 H 0.10 1.05 6.16 -51.93 -0.32 0.72 16 LS Contribution 341.14 15.07 5.14 5.14 Total: -1.00 -30.39 341.14 -7.95 -38.34 By element: Atomic # 1 Polarization: 7.27 SS G_CDS: -5.99 Total: 1.29 kcal Atomic # 6 Polarization: -1.40 SS G_CDS: -2.34 Total: -3.74 kcal Atomic # 7 Polarization: -57.05 SS G_CDS: 0.26 Total: -56.80 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -30.39 -7.95 -38.34 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262110168.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.666 kcal (2) G-P(sol) polarization free energy of solvation -30.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.344 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.26 seconds