Wall clock time and date at job start Mon Mar 30 2020 02:07:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.47012 * 2 1 4 4 C 1.50702 * 109.46987 * 119.99875 * 2 1 3 5 5 C 1.34665 * 126.59101 * 325.04227 * 4 2 1 6 6 N 1.34127 * 108.01901 * 179.97438 * 5 4 2 7 7 C 1.30496 * 109.25626 * 359.97438 * 6 5 4 8 8 C 1.50706 * 125.65059 * 180.02562 * 7 6 5 9 9 N 1.46899 * 109.47074 * 275.24758 * 8 7 6 10 10 C 1.46903 * 110.99915 * 163.90846 * 9 8 7 11 11 C 1.50696 * 109.46902 * 189.99942 * 10 9 8 12 12 H 1.07995 * 120.00346 * 0.02562 * 11 10 9 13 13 C 1.37878 * 119.99971 * 179.97438 * 11 10 9 14 14 N 1.31520 * 119.99831 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 120.00134 * 180.02562 * 13 11 10 16 16 H 1.48490 * 109.47233 * 60.00095 * 15 13 11 17 17 H 1.48502 * 109.47095 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.46953 * 299.99868 * 15 13 11 19 19 C 1.46892 * 110.99956 * 287.86443 * 9 8 7 20 20 C 1.52997 * 109.47133 * 295.31981 * 19 9 8 21 21 C 1.47202 * 109.47135 * 177.07773 * 20 19 9 22 22 N 6.78608 * 170.96216 * 177.19348 * 2 1 3 23 23 N 1.35040 * 108.70140 * 0.02562 * 7 6 5 24 24 H 0.96999 * 126.39836 * 180.26185 * 23 7 6 25 25 H 1.08999 * 109.47015 * 60.00051 * 1 2 3 26 26 H 1.09002 * 109.46872 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47186 * 299.99887 * 1 2 3 28 28 H 1.09003 * 109.46857 * 239.99765 * 2 1 3 29 29 H 1.09007 * 109.47160 * 179.97438 * 3 2 1 30 30 H 1.08999 * 109.47189 * 299.99842 * 3 2 1 31 31 H 1.08998 * 109.47053 * 60.00031 * 3 2 1 32 32 H 1.08004 * 125.98882 * 359.96797 * 5 4 2 33 33 H 1.08999 * 109.46926 * 35.24656 * 8 7 6 34 34 H 1.08994 * 109.46960 * 155.24665 * 8 7 6 35 35 H 1.09003 * 109.46923 * 309.99973 * 10 9 8 36 36 H 1.08999 * 109.46643 * 70.00095 * 10 9 8 37 37 H 0.96998 * 119.99980 * 180.02562 * 14 13 11 38 38 H 1.09002 * 109.47323 * 55.32217 * 19 9 8 39 39 H 1.09004 * 109.47074 * 175.31865 * 19 9 8 40 40 H 1.09001 * 109.47515 * 297.07509 * 20 19 9 41 41 H 1.08995 * 109.47530 * 57.07685 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2305 5 6 1.4644 -0.6999 2.4515 6 7 2.2180 -1.4534 3.2661 7 6 3.2310 -1.9307 2.5960 8 6 4.3092 -2.8247 3.1523 9 7 5.3497 -2.0021 3.7840 10 6 6.2064 -2.8159 4.6568 11 6 7.0967 -1.9125 5.4705 12 1 7.0323 -0.8410 5.3515 13 6 7.9928 -2.4538 6.3677 14 7 8.0709 -3.7586 6.5130 15 14 9.0960 -1.3339 7.3769 16 1 8.2585 -0.4312 8.2068 17 1 9.9621 -2.1565 8.2592 18 1 9.9447 -0.5240 6.4665 19 6 6.1478 -1.2955 2.7733 20 6 6.9125 -2.3131 1.9245 21 6 7.6572 -1.6095 0.8675 22 7 8.2319 -1.0647 0.0522 23 7 3.1530 -1.4910 1.3216 24 1 3.7730 -1.6940 0.6037 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 3.1301 1.4425 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 0.5606 -0.1765 2.7266 33 1 3.8773 -3.4966 3.8939 34 1 4.7490 -3.4094 2.3445 35 1 5.5836 -3.4104 5.3253 36 1 6.8208 -3.4786 4.0474 37 1 8.7011 -4.1394 7.1445 38 1 5.4876 -0.7108 2.1326 39 1 6.8554 -0.6308 3.2689 40 1 7.6103 -2.8623 2.5565 41 1 6.2081 -3.0099 1.4703 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001262110168.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:40 Heat of formation + Delta-G solvation = 57.110400 kcal Electronic energy + Delta-G solvation = -21226.419344 eV Core-core repulsion = 18141.288908 eV Total energy + Delta-G solvation = -3085.130436 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 4.29 seconds Orbital eigenvalues (eV) -43.02849 -39.30829 -37.38525 -36.37674 -34.67842 -33.32577 -32.18149 -30.76750 -28.50319 -27.94589 -26.54032 -25.25400 -23.55717 -22.23313 -21.51553 -20.31082 -18.99587 -18.27067 -18.10764 -17.05910 -16.42779 -16.00963 -15.79617 -15.65675 -15.14175 -15.02961 -14.84821 -14.64976 -14.39929 -13.91259 -13.77395 -13.57473 -13.44231 -13.04353 -12.94958 -12.93433 -12.73212 -12.63881 -12.42403 -12.28812 -12.04169 -11.91139 -11.88289 -11.62113 -11.27116 -10.84693 -10.71905 -10.51374 -9.12793 -8.91905 -8.12122 -6.18261 1.13758 1.45848 1.47545 1.54167 1.71700 1.75270 2.17427 2.27063 2.47246 2.96344 3.22589 3.46324 3.63216 3.88402 4.00915 4.06611 4.09977 4.27706 4.29731 4.45095 4.50419 4.58928 4.71319 4.83995 4.85829 4.86523 4.90450 5.04052 5.12430 5.19749 5.25318 5.36869 5.40478 5.40807 5.56885 5.73484 5.91636 6.12875 6.32790 6.53202 6.55961 6.66756 6.96014 7.32134 7.50137 8.97203 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.018944 B = 0.004458 C = 0.004009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1477.659900 B = 6279.293303 C = 6982.006220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.014 4.014 3 C -0.142 4.142 4 C -0.009 4.009 5 C -0.049 4.049 6 N -0.516 5.516 7 C 0.218 3.782 8 C 0.132 3.868 9 N -0.532 5.532 10 C 0.203 3.797 11 C -0.517 4.517 12 H 0.056 0.944 13 C 0.014 3.986 14 N -0.926 5.926 15 Si 0.949 3.051 16 H -0.276 1.276 17 H -0.286 1.286 18 H -0.272 1.272 19 C 0.078 3.922 20 C -0.063 4.063 21 C 0.243 3.757 22 N -0.490 5.490 23 N -0.554 5.554 24 H 0.426 0.574 25 H 0.078 0.922 26 H 0.054 0.946 27 H 0.060 0.940 28 H 0.087 0.913 29 H 0.042 0.958 30 H 0.079 0.921 31 H 0.053 0.947 32 H 0.173 0.827 33 H 0.090 0.910 34 H 0.081 0.919 35 H 0.009 0.991 36 H 0.006 0.994 37 H 0.263 0.737 38 H 0.072 0.928 39 H 0.069 0.931 40 H 0.114 0.886 41 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.555 3.844 -15.076 19.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.034 4.034 3 C -0.199 4.199 4 C -0.126 4.126 5 C -0.196 4.196 6 N -0.236 5.236 7 C -0.046 4.046 8 C 0.003 3.997 9 N -0.255 5.255 10 C 0.078 3.922 11 C -0.556 4.556 12 H 0.074 0.926 13 C -0.185 4.185 14 N -0.567 5.567 15 Si 0.775 3.225 16 H -0.202 1.202 17 H -0.212 1.212 18 H -0.197 1.197 19 C -0.052 4.052 20 C -0.104 4.104 21 C -0.074 4.074 22 N -0.168 5.168 23 N -0.159 5.159 24 H 0.265 0.735 25 H 0.097 0.903 26 H 0.073 0.927 27 H 0.079 0.921 28 H 0.106 0.894 29 H 0.061 0.939 30 H 0.098 0.902 31 H 0.072 0.928 32 H 0.191 0.809 33 H 0.109 0.891 34 H 0.098 0.902 35 H 0.028 0.972 36 H 0.024 0.976 37 H 0.072 0.928 38 H 0.091 0.909 39 H 0.087 0.913 40 H 0.132 0.868 41 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -12.033 4.728 -15.006 19.807 hybrid contribution 1.410 -0.354 -0.140 1.460 sum -10.624 4.374 -15.146 19.010 Atomic orbital electron populations 1.21784 0.92360 1.02350 1.03076 1.19643 0.97085 0.94923 0.91756 1.21839 1.00436 0.94820 1.02834 1.21589 0.90843 1.00884 0.99271 1.22319 1.02720 1.04583 0.90017 1.70196 1.05889 1.13786 1.33761 1.23029 0.98073 1.02094 0.81418 1.20457 0.88765 0.91654 0.98818 1.62069 1.13741 1.31054 1.18637 1.19540 0.90284 0.91617 0.90788 1.21390 1.18742 0.93670 1.21780 0.92556 1.25594 0.98714 0.96087 0.98095 1.70014 1.37887 1.11397 1.37353 0.85747 0.78867 0.78951 0.78905 1.20183 1.21152 1.19734 1.21941 0.95593 0.95688 0.92011 1.20181 0.99528 0.99081 0.91649 1.29333 0.92492 0.92529 0.93027 1.81213 1.11243 1.11105 1.13262 1.43158 1.22400 1.38792 1.11514 0.73456 0.90312 0.92653 0.92121 0.89445 0.93866 0.90185 0.92762 0.80932 0.89149 0.90157 0.97246 0.97643 0.92848 0.90932 0.91253 0.86815 0.84867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.67 8.79 71.98 0.63 -1.04 16 2 C -0.01 -0.21 3.38 -11.54 -0.04 -0.25 16 3 C -0.14 -2.06 9.17 71.98 0.66 -1.40 16 4 C -0.01 -0.20 6.16 40.95 0.25 0.05 16 5 C -0.05 -1.34 11.06 83.52 0.92 -0.42 16 6 N -0.52 -17.71 11.25 -188.13 -2.12 -19.83 16 7 C 0.22 6.40 6.89 138.13 0.95 7.35 16 8 C 0.13 3.91 5.48 85.56 0.47 4.38 16 9 N -0.53 -19.36 4.65 -905.39 -4.21 -23.57 16 10 C 0.20 9.14 4.46 85.56 0.38 9.52 16 11 C -0.52 -26.66 8.52 25.60 0.22 -26.44 16 12 H 0.06 2.93 7.10 -2.91 -0.02 2.91 16 13 C 0.01 0.74 5.46 84.65 0.46 1.20 16 14 N -0.93 -51.63 13.29 21.45 0.28 -51.34 16 15 Si 0.95 42.82 29.54 68.60 2.03 44.85 16 16 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 17 H -0.29 -12.73 7.11 99.48 0.71 -12.02 16 18 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 19 C 0.08 2.41 4.97 86.30 0.43 2.84 16 20 C -0.06 -1.59 5.03 28.79 0.14 -1.44 16 21 C 0.24 6.79 15.44 89.44 1.38 8.17 16 22 N -0.49 -15.91 18.54 20.01 0.37 -15.53 16 23 N -0.55 -12.23 5.71 -174.60 -1.00 -13.22 16 24 H 0.43 6.80 8.96 -92.71 -0.83 5.97 16 25 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 26 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 27 H 0.06 0.77 7.32 -2.39 -0.02 0.75 16 28 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 29 H 0.04 0.72 8.14 -2.38 -0.02 0.70 16 30 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.17 4.06 7.40 -2.91 -0.02 4.04 16 33 H 0.09 2.93 7.81 -2.39 -0.02 2.92 16 34 H 0.08 1.77 5.91 -2.39 -0.01 1.75 16 35 H 0.01 0.48 7.86 -2.39 -0.02 0.46 16 36 H 0.01 0.26 6.04 -2.39 -0.01 0.25 16 37 H 0.26 14.06 8.31 -92.71 -0.77 13.29 16 38 H 0.07 2.01 7.02 -2.39 -0.02 1.99 16 39 H 0.07 2.52 6.88 -2.38 -0.02 2.50 16 40 H 0.11 3.37 6.42 -2.39 -0.02 3.36 16 41 H 0.13 2.40 6.16 -2.39 -0.01 2.39 16 Total: -1.00 -66.20 341.14 2.44 -63.76 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: 0.21 Total: 12.37 kcal Atomic # 6 Polarization: -4.35 SS G_CDS: 6.87 Total: 2.52 kcal Atomic # 7 Polarization: -116.83 SS G_CDS: -6.66 Total: -123.50 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 2.03 Total: 44.85 kcal Total: -66.20 2.44 -63.76 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262110168.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.869 kcal (2) G-P(sol) polarization free energy of solvation -66.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.759 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.29 seconds