Wall clock time and date at job start Mon Mar 30 2020 01:38:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86805 * 119.99700 * 2 1 4 4 H 1.48509 * 109.46813 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47317 * 299.99797 * 3 2 1 6 6 H 1.48495 * 109.47151 * 60.00437 * 3 2 1 7 7 C 1.37871 * 120.00191 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00142 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00107 * 359.97438 * 7 2 1 10 10 N 1.46897 * 109.47145 * 180.02562 * 9 7 2 11 11 C 1.48464 * 111.00170 * 287.66262 * 10 9 7 12 12 C 1.54910 * 103.21334 * 200.05731 * 11 10 9 13 13 C 1.54411 * 102.98645 * 37.79490 * 12 11 10 14 14 H 1.09004 * 112.70479 * 100.20626 * 13 12 11 15 15 C 1.54231 * 108.98244 * 225.54073 * 13 12 11 16 16 N 1.48566 * 104.55215 * 136.85041 * 15 13 12 17 17 C 1.46899 * 110.99916 * 200.45622 * 16 15 13 18 18 C 1.50697 * 109.47308 * 69.87423 * 17 16 15 19 19 C 1.39876 * 126.04240 * 90.02037 * 18 17 16 20 20 N 1.30833 * 108.20323 * 179.97438 * 19 18 17 21 21 N 1.40084 * 108.20528 * 359.97438 * 20 19 18 22 22 H 0.97003 * 126.03578 * 180.02562 * 21 20 19 23 23 C 1.34945 * 107.92682 * 359.76061 * 21 20 19 24 24 C 1.48496 * 104.20481 * 320.00341 * 16 15 13 25 25 C 1.47886 * 110.99609 * 170.00072 * 10 9 7 26 26 H 1.08993 * 111.76432 * 23.05535 * 25 10 9 27 27 H 0.96998 * 120.00357 * 0.02562 * 1 2 3 28 28 H 1.09003 * 109.47140 * 60.00312 * 9 7 2 29 29 H 1.09004 * 109.47043 * 300.00717 * 9 7 2 30 30 H 1.08999 * 110.66685 * 318.49148 * 11 10 9 31 31 H 1.08997 * 110.66875 * 81.62660 * 11 10 9 32 32 H 1.08998 * 110.71032 * 279.41552 * 12 11 10 33 33 H 1.09005 * 110.71065 * 156.16536 * 12 11 10 34 34 H 1.08997 * 110.42014 * 18.08388 * 15 13 12 35 35 H 1.09002 * 110.52724 * 255.66710 * 15 13 12 36 36 H 1.09006 * 109.46739 * 189.86975 * 17 16 15 37 37 H 1.08994 * 109.47113 * 309.87115 * 17 16 15 38 38 H 1.08001 * 125.89309 * 359.97438 * 19 18 17 39 39 H 1.08006 * 126.13007 * 180.23633 * 23 21 20 40 40 H 1.09004 * 110.36830 * 158.17329 * 24 16 15 41 41 H 1.08997 * 110.37526 * 280.50306 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 7 2.2057 -3.6156 -0.0005 11 6 2.8711 -3.7467 -1.3212 12 6 3.3976 -5.2036 -1.3093 13 6 2.2700 -5.9742 -0.5889 14 1 1.6132 -6.5024 -1.2802 15 6 2.8967 -6.9175 0.4581 16 7 2.0359 -6.7661 1.6595 17 6 2.7427 -7.2009 2.8717 18 6 3.8403 -6.2194 3.1925 19 6 3.7196 -5.0855 4.0027 20 7 4.8820 -4.4866 4.0433 21 7 5.7808 -5.2217 3.2597 22 1 6.7152 -5.0080 3.1107 23 6 5.1187 -6.2830 2.7534 24 6 1.7350 -5.3128 1.7114 25 6 1.5166 -4.9020 0.2392 26 1 0.4611 -4.8509 -0.0277 27 1 -0.4850 0.8400 -0.0004 28 1 0.6241 -2.5567 -0.8903 29 1 0.6247 -2.5570 0.8896 30 1 2.1538 -3.6034 -2.1293 31 1 3.6964 -3.0401 -1.4080 32 1 4.3302 -5.2719 -0.7492 33 1 3.5292 -5.5742 -2.3260 34 1 3.9188 -6.6121 0.6817 35 1 2.8774 -7.9482 0.1040 36 1 2.0411 -7.2464 3.7047 37 1 3.1747 -8.1877 2.7060 38 1 2.8217 -4.7607 4.5074 39 1 5.5338 -7.0450 2.1103 40 1 0.8311 -5.1331 2.2934 41 1 2.5763 -4.7660 2.1370 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277939111.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:11 Heat of formation + Delta-G solvation = 72.515749 kcal Electronic energy + Delta-G solvation = -22313.372836 eV Core-core repulsion = 19228.910427 eV Total energy + Delta-G solvation = -3084.462410 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.29215 -40.76956 -37.50821 -35.14190 -33.31640 -32.30074 -31.94225 -29.83770 -29.07709 -27.26613 -25.88008 -24.20739 -23.00440 -22.08672 -21.87751 -20.81855 -20.26061 -18.64442 -18.49577 -17.30367 -16.71618 -16.39255 -15.70336 -15.53762 -15.34289 -15.23475 -14.86910 -14.62931 -14.33017 -14.17139 -13.82752 -13.61975 -13.08246 -12.91795 -12.85069 -12.62184 -12.34825 -12.29538 -12.10796 -11.85748 -11.76192 -11.57662 -11.48135 -11.37263 -11.22857 -10.65812 -10.48840 -9.43784 -9.29099 -9.11355 -8.24622 -6.34936 1.05896 1.34915 1.36421 1.49550 1.86185 2.14540 2.35878 3.07422 3.16554 3.48023 3.62309 3.83032 3.94677 3.99897 4.07707 4.34679 4.35929 4.43774 4.57111 4.60388 4.65978 4.74376 4.82837 4.87573 4.97534 4.99049 5.01301 5.05897 5.12913 5.15048 5.23367 5.26491 5.28530 5.43441 5.62032 5.71578 5.92942 6.05308 6.22291 6.31482 6.52425 6.57850 6.77390 6.81120 7.35020 8.86976 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.017330 B = 0.005853 C = 0.005067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1615.279788 B = 4782.376921 C = 5524.094887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.002 3.998 3 Si 0.968 3.032 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.277 1.277 7 C -0.520 4.520 8 H 0.055 0.945 9 C 0.205 3.795 10 N -0.514 5.514 11 C 0.043 3.957 12 C -0.101 4.101 13 C -0.095 4.095 14 H 0.095 0.905 15 C 0.047 3.953 16 N -0.505 5.505 17 C 0.122 3.878 18 C -0.278 4.278 19 C 0.050 3.950 20 N -0.337 5.337 21 N -0.473 5.473 22 H 0.448 0.552 23 C 0.079 3.921 24 C 0.053 3.947 25 C 0.050 3.950 26 H 0.033 0.967 27 H 0.265 0.735 28 H -0.040 1.040 29 H -0.004 1.004 30 H 0.021 0.979 31 H 0.061 0.939 32 H 0.077 0.923 33 H 0.092 0.908 34 H 0.057 0.943 35 H 0.103 0.897 36 H 0.082 0.918 37 H 0.106 0.894 38 H 0.176 0.824 39 H 0.212 0.788 40 H 0.053 0.947 41 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.917 -18.525 2.183 21.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.196 4.196 3 Si 0.792 3.208 4 H -0.191 1.191 5 H -0.199 1.199 6 H -0.203 1.203 7 C -0.558 4.558 8 H 0.074 0.926 9 C 0.078 3.922 10 N -0.238 5.238 11 C -0.085 4.085 12 C -0.139 4.139 13 C -0.115 4.115 14 H 0.113 0.887 15 C -0.081 4.081 16 N -0.228 5.228 17 C -0.007 4.007 18 C -0.291 4.291 19 C -0.136 4.136 20 N -0.160 5.160 21 N -0.181 5.181 22 H 0.294 0.706 23 C -0.070 4.070 24 C -0.075 4.075 25 C -0.060 4.060 26 H 0.051 0.949 27 H 0.074 0.926 28 H -0.022 1.022 29 H 0.014 0.986 30 H 0.039 0.961 31 H 0.079 0.921 32 H 0.096 0.904 33 H 0.111 0.889 34 H 0.075 0.925 35 H 0.121 0.879 36 H 0.101 0.899 37 H 0.124 0.876 38 H 0.193 0.807 39 H 0.229 0.771 40 H 0.071 0.929 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 11.292 -17.649 3.052 21.173 hybrid contribution -0.251 1.465 -0.813 1.694 sum 11.041 -16.184 2.239 19.719 Atomic orbital electron populations 1.70090 1.07680 1.27855 1.51842 1.25908 0.95758 1.03158 0.94783 0.85358 0.78781 0.78676 0.77949 1.19103 1.19926 1.20286 1.21406 0.93247 0.91217 1.49914 0.92647 1.19452 0.90153 0.89642 0.92918 1.64803 1.27953 1.02077 1.28958 1.23086 0.97578 0.98004 0.89845 1.22560 0.97636 0.92220 1.01451 1.22730 0.96579 0.95107 0.97048 0.88705 1.23243 0.95410 1.00024 0.89403 1.65754 1.38521 1.15083 1.03396 1.20745 0.91357 0.96139 0.92432 1.20911 0.97112 1.02566 1.08541 1.23963 0.96168 0.94643 0.98864 1.77290 1.01454 1.20130 1.17079 1.46341 1.12746 1.20006 1.39050 0.70614 1.22960 0.92636 0.92739 0.98650 1.22963 1.00431 0.89202 0.94941 1.23193 0.95670 0.90277 0.96833 0.94886 0.92615 1.02188 0.98580 0.96109 0.92064 0.90441 0.88923 0.92473 0.87900 0.89929 0.87598 0.80736 0.77143 0.92854 0.91991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.32 13.29 21.44 0.28 -58.04 16 2 C 0.00 0.11 5.46 84.65 0.46 0.57 16 3 Si 0.97 46.21 29.54 68.60 2.03 48.23 16 4 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 5 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 6 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 7 C -0.52 -31.08 8.90 25.60 0.23 -30.85 16 8 H 0.06 3.30 7.81 -2.91 -0.02 3.28 16 9 C 0.21 11.62 4.50 85.56 0.38 12.00 16 10 N -0.51 -23.30 4.69 -858.13 -4.02 -27.32 16 11 C 0.04 1.69 6.11 86.65 0.53 2.22 16 12 C -0.10 -2.75 6.60 31.73 0.21 -2.54 16 13 C -0.10 -2.63 4.02 -9.21 -0.04 -2.66 16 14 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 15 C 0.05 1.01 5.87 86.40 0.51 1.51 16 16 N -0.51 -12.67 5.65 -886.50 -5.01 -17.67 16 17 C 0.12 2.42 6.06 85.56 0.52 2.94 16 18 C -0.28 -6.33 3.79 -20.14 -0.08 -6.41 16 19 C 0.05 1.45 10.07 85.24 0.86 2.30 16 20 N -0.34 -10.39 12.70 -57.02 -0.72 -11.11 16 21 N -0.47 -10.40 7.36 -57.59 -0.42 -10.83 16 22 H 0.45 7.00 8.96 -213.33 -1.91 5.09 16 23 C 0.08 1.46 10.39 83.54 0.87 2.33 16 24 C 0.05 1.81 5.82 86.47 0.50 2.32 16 25 C 0.05 1.89 3.45 45.89 0.16 2.05 16 26 H 0.03 1.40 7.83 -2.39 -0.02 1.38 16 27 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 28 H -0.04 -2.42 7.84 -2.39 -0.02 -2.44 16 29 H 0.00 -0.24 8.08 -2.38 -0.02 -0.26 16 30 H 0.02 0.87 7.82 -2.39 -0.02 0.85 16 31 H 0.06 2.53 8.14 -2.39 -0.02 2.51 16 32 H 0.08 1.97 7.19 -2.39 -0.02 1.96 16 33 H 0.09 2.01 8.14 -2.38 -0.02 1.99 16 34 H 0.06 1.16 4.80 -2.39 -0.01 1.14 16 35 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 36 H 0.08 1.63 8.14 -2.38 -0.02 1.61 16 37 H 0.11 1.48 8.08 -2.39 -0.02 1.46 16 38 H 0.18 4.86 8.06 -2.91 -0.02 4.83 16 39 H 0.21 1.97 7.85 -2.91 -0.02 1.94 16 40 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 41 H 0.06 2.33 4.63 -2.39 -0.01 2.32 16 Total: -1.00 -74.75 321.68 -3.63 -78.38 By element: Atomic # 1 Polarization: 13.46 SS G_CDS: -0.88 Total: 12.58 kcal Atomic # 6 Polarization: -19.33 SS G_CDS: 5.11 Total: -14.22 kcal Atomic # 7 Polarization: -115.09 SS G_CDS: -9.89 Total: -124.98 kcal Atomic # 14 Polarization: 46.21 SS G_CDS: 2.03 Total: 48.23 kcal Total: -74.75 -3.63 -78.38 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277939111.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.898 kcal (2) G-P(sol) polarization free energy of solvation -74.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.382 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds