Wall clock time and date at job start Mon Mar 30 2020 01:39:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 119.99774 * 2 1 4 4 H 1.48500 * 109.46833 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47069 * 299.99766 * 3 2 1 6 6 H 1.48503 * 109.47201 * 59.99894 * 3 2 1 7 7 C 1.37877 * 120.00276 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99990 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99738 * 0.02562 * 7 2 1 10 10 N 1.46900 * 109.47159 * 180.02562 * 9 7 2 11 11 C 1.48211 * 110.99932 * 169.99927 * 10 9 7 12 12 C 1.52697 * 85.72166 * 223.25866 * 11 10 9 13 13 C 1.48217 * 111.00080 * 70.28180 * 10 9 7 14 14 C 1.52265 * 122.14471 * 150.12541 * 12 11 10 15 15 N 1.47723 * 87.55951 * 150.26125 * 14 12 11 16 16 C 1.46899 * 110.99984 * 222.26802 * 15 14 12 17 17 C 1.52997 * 109.47254 * 169.99628 * 16 15 14 18 18 N 1.46500 * 109.47473 * 179.97438 * 17 16 15 19 19 C 1.36879 * 126.39928 * 269.71919 * 18 17 16 20 20 C 1.34667 * 106.81916 * 179.84053 * 19 18 17 21 21 N 1.34134 * 108.01865 * 0.42078 * 20 19 18 22 22 C 1.30499 * 109.25603 * 359.73149 * 21 20 19 23 23 C 1.47732 * 88.19399 * 334.10280 * 15 14 12 24 24 H 0.97002 * 120.00004 * 0.02562 * 1 2 3 25 25 H 1.08998 * 109.47452 * 59.99240 * 9 7 2 26 26 H 1.09009 * 109.46617 * 299.99749 * 9 7 2 27 27 H 1.08999 * 113.83351 * 109.06125 * 11 10 9 28 28 H 1.09000 * 113.83818 * 337.45478 * 11 10 9 29 29 H 1.08992 * 113.83449 * 22.53506 * 13 10 9 30 30 H 1.08999 * 113.82931 * 250.94103 * 13 10 9 31 31 H 1.09003 * 113.54133 * 35.58405 * 14 12 11 32 32 H 1.09006 * 113.53868 * 264.93139 * 14 12 11 33 33 H 1.09002 * 109.47043 * 289.99699 * 16 15 14 34 34 H 1.09001 * 109.47354 * 49.99760 * 16 15 14 35 35 H 1.09002 * 109.47153 * 300.00004 * 17 16 15 36 36 H 1.08998 * 109.47533 * 59.99633 * 17 16 15 37 37 H 1.07996 * 126.58690 * 359.97242 * 19 18 17 38 38 H 1.07998 * 125.98945 * 180.11728 * 20 19 18 39 39 H 1.08002 * 125.64752 * 179.97438 * 22 21 20 40 40 H 1.08994 * 113.54135 * 140.56681 * 23 15 14 41 41 H 1.09001 * 113.53370 * 271.22713 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2057 -3.6157 0.0018 11 6 1.5149 -4.9048 0.2421 12 6 2.6752 -5.2201 1.1833 13 6 2.9047 -3.7155 1.3049 14 6 2.5082 -6.1154 2.4036 15 7 3.9238 -6.5025 2.2348 16 6 4.1024 -7.9465 2.4371 17 6 5.5164 -8.3497 2.0142 18 7 5.6948 -9.7896 2.2164 19 6 6.1588 -10.3992 3.3508 20 6 6.1603 -11.7239 3.1085 21 7 5.7183 -11.9173 1.8569 22 6 5.4375 -10.7631 1.3165 23 6 3.7919 -6.1814 0.7989 24 1 -0.4850 0.8401 -0.0004 25 1 0.6247 -2.5571 -0.8896 26 1 0.6241 -2.5566 0.8904 27 1 1.4709 -5.5510 -0.6346 28 1 0.5541 -4.8024 0.7465 29 1 2.3647 -3.2529 2.1310 30 1 3.9546 -3.4254 1.2648 31 1 1.8103 -6.9380 2.2478 32 1 2.3143 -5.5648 3.3242 33 1 3.9557 -8.1867 3.4902 34 1 3.3742 -8.4905 1.8355 35 1 5.6631 -8.1094 0.9611 36 1 6.2446 -7.8057 2.6157 37 1 6.4629 -9.9116 4.2651 38 1 6.4685 -12.4950 3.7990 39 1 5.0621 -10.6116 0.3152 40 1 4.6682 -5.6858 0.3813 41 1 3.4531 -7.0226 0.1941 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277939416.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:53 Heat of formation + Delta-G solvation = 143.465519 kcal Electronic energy + Delta-G solvation = -20656.310861 eV Core-core repulsion = 17574.925064 eV Total energy + Delta-G solvation = -3081.385797 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.27638 -40.98468 -37.57800 -34.80092 -32.86289 -30.84082 -29.66249 -28.48606 -26.27931 -25.84812 -25.63016 -23.88501 -21.95772 -21.56769 -21.00462 -20.34074 -18.03556 -17.67038 -16.52828 -15.99438 -15.96261 -15.38112 -15.03076 -14.81931 -14.42507 -14.23052 -14.05540 -13.84879 -13.37681 -13.19410 -13.07944 -12.77837 -12.31707 -11.95775 -11.79842 -11.50629 -11.37532 -10.92060 -10.71411 -10.46091 -10.31442 -10.23726 -10.20430 -9.89388 -9.59126 -9.20262 -9.02140 -8.77581 -8.52160 -7.77427 -6.08383 -4.10194 1.79997 2.45740 2.94596 3.27595 3.35148 3.40155 3.79664 4.22600 4.29121 4.38537 4.47715 4.49536 4.60272 4.65124 4.88163 4.95562 5.02889 5.12227 5.18797 5.23797 5.28275 5.41708 5.45505 5.51864 5.70945 5.84288 5.96113 5.99230 6.01729 6.07694 6.22389 6.38364 6.48006 6.53520 6.69594 6.82547 6.92723 7.18636 7.60685 7.82838 7.85866 8.09270 8.39112 8.97779 9.54672 11.02869 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.050629 B = 0.002713 C = 0.002664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 552.913252 B =10316.592228 C =10506.669953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.055 3.945 3 Si 0.898 3.102 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.284 1.284 7 C -0.509 4.509 8 H 0.062 0.938 9 C 0.160 3.840 10 N -0.477 5.477 11 C 0.013 3.987 12 C -0.119 4.119 13 C 0.057 3.943 14 C 0.011 3.989 15 N -0.467 5.467 16 C 0.007 3.993 17 C 0.109 3.891 18 N -0.456 5.456 19 C -0.054 4.054 20 C -0.034 4.034 21 N -0.498 5.498 22 C 0.180 3.820 23 C 0.025 3.975 24 H 0.261 0.739 25 H 0.031 0.969 26 H -0.002 1.002 27 H 0.077 0.923 28 H 0.065 0.935 29 H 0.070 0.930 30 H 0.080 0.920 31 H 0.070 0.930 32 H 0.089 0.911 33 H 0.081 0.919 34 H 0.048 0.952 35 H 0.095 0.905 36 H 0.101 0.899 37 H 0.173 0.827 38 H 0.168 0.832 39 H 0.203 0.797 40 H 0.092 0.908 41 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.967 -18.124 6.181 21.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.726 3.274 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.548 4.548 8 H 0.081 0.919 9 C 0.034 3.966 10 N -0.200 5.200 11 C -0.117 4.117 12 C -0.120 4.120 13 C -0.072 4.072 14 C -0.118 4.118 15 N -0.189 5.189 16 C -0.123 4.123 17 C -0.014 4.014 18 N -0.139 5.139 19 C -0.187 4.187 20 C -0.182 4.182 21 N -0.216 5.216 22 C -0.102 4.102 23 C -0.103 4.103 24 H 0.071 0.929 25 H 0.049 0.951 26 H 0.016 0.984 27 H 0.095 0.905 28 H 0.084 0.916 29 H 0.088 0.912 30 H 0.099 0.901 31 H 0.088 0.912 32 H 0.107 0.893 33 H 0.100 0.900 34 H 0.066 0.934 35 H 0.114 0.886 36 H 0.120 0.880 37 H 0.191 0.809 38 H 0.185 0.815 39 H 0.219 0.781 40 H 0.111 0.889 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 9.621 -18.211 5.586 21.340 hybrid contribution -0.802 1.267 0.695 1.653 sum 8.819 -16.943 6.281 20.107 Atomic orbital electron populations 1.69966 1.06084 1.26737 1.50966 1.25002 0.94879 0.99419 0.95312 0.86440 0.80106 0.83342 0.77554 1.19626 1.20958 1.21057 1.21130 0.93472 0.89948 1.50202 0.91936 1.20210 0.91039 0.88865 0.96470 1.68596 1.20990 1.01734 1.28662 1.23631 0.95251 0.95377 0.97436 1.22993 0.97141 0.96316 0.95529 1.23231 1.00910 0.89603 0.93472 1.23713 0.89260 0.98533 1.00269 1.68964 1.22014 1.13167 1.14781 1.22978 0.95468 0.91305 1.02522 1.21811 0.98639 0.76923 1.04034 1.45603 1.47852 1.07956 1.12503 1.22783 1.08642 0.94565 0.92760 1.22315 1.06637 0.94506 0.94737 1.70299 1.17505 1.25139 1.08661 1.25028 1.04920 0.82677 0.97585 1.23525 0.99209 0.97628 0.89960 0.92932 0.95062 0.98445 0.90482 0.91645 0.91150 0.90140 0.91186 0.89308 0.90041 0.93370 0.88643 0.88035 0.80947 0.81459 0.78073 0.88920 0.91191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.46 13.29 55.43 0.74 -25.73 16 2 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 3 Si 0.90 21.46 29.54 -169.99 -5.02 16.44 16 4 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 5 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.51 -14.18 8.83 -34.44 -0.30 -14.48 16 8 H 0.06 1.74 7.79 -52.49 -0.41 1.33 16 9 C 0.16 4.10 4.58 -4.98 -0.02 4.08 16 10 N -0.48 -9.94 6.25 -246.78 -1.54 -11.49 16 11 C 0.01 0.21 7.80 -3.26 -0.03 0.19 16 12 C -0.12 -1.67 1.46 -155.81 -0.23 -1.90 16 13 C 0.06 1.03 7.28 -3.26 -0.02 1.00 16 14 C 0.01 0.13 7.54 -6.68 -0.05 0.08 16 15 N -0.47 -5.00 6.41 -244.55 -1.57 -6.57 16 16 C 0.01 0.06 5.14 -3.83 -0.02 0.04 16 17 C 0.11 0.80 6.25 -4.04 -0.03 0.78 16 18 N -0.46 -3.94 2.75 -118.58 -0.33 -4.27 16 19 C -0.05 -0.47 11.58 -16.56 -0.19 -0.66 16 20 C -0.03 -0.34 11.87 -17.81 -0.21 -0.55 16 21 N -0.50 -5.92 11.25 -14.66 -0.16 -6.09 16 22 C 0.18 1.73 12.56 -90.37 -1.14 0.60 16 23 C 0.03 0.29 6.81 -6.68 -0.05 0.24 16 24 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 25 H 0.03 0.87 8.14 -51.93 -0.42 0.44 16 26 H 0.00 -0.06 7.71 -51.92 -0.40 -0.46 16 27 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 28 H 0.07 1.10 7.80 -51.93 -0.40 0.69 16 29 H 0.07 1.36 7.79 -51.93 -0.40 0.95 16 30 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 31 H 0.07 0.73 7.77 -51.93 -0.40 0.33 16 32 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.05 0.42 7.59 -51.93 -0.39 0.03 16 35 H 0.10 0.64 7.65 -51.93 -0.40 0.24 16 36 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.17 1.03 8.06 -52.49 -0.42 0.60 16 38 H 0.17 1.28 8.06 -52.49 -0.42 0.85 16 39 H 0.20 1.34 8.06 -52.49 -0.42 0.92 16 40 H 0.09 1.10 8.14 -51.93 -0.42 0.67 16 41 H 0.07 0.69 7.71 -51.93 -0.40 0.29 16 LS Contribution 339.25 15.07 5.11 5.11 Total: -1.00 -31.80 339.25 -11.73 -43.53 By element: Atomic # 1 Polarization: 4.75 SS G_CDS: -6.58 Total: -1.82 kcal Atomic # 6 Polarization: -6.75 SS G_CDS: -2.38 Total: -9.13 kcal Atomic # 7 Polarization: -51.27 SS G_CDS: -2.86 Total: -54.14 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -31.80 -11.73 -43.53 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277939416.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 186.996 kcal (2) G-P(sol) polarization free energy of solvation -31.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 155.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.531 kcal (6) G-S(sol) free energy of system = (1) + (5) 143.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds