Wall clock time and date at job start Mon Mar 30 2020 01:39:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86805 * 119.99842 * 2 1 4 4 H 1.48502 * 109.46715 * 270.00101 * 3 2 1 5 5 H 1.48499 * 109.46981 * 29.99667 * 3 2 1 6 6 H 1.48489 * 109.47231 * 150.00128 * 3 2 1 7 7 C 1.38810 * 120.00188 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00053 * 196.88456 * 7 2 1 9 9 N 1.36930 * 119.99851 * 17.17041 * 7 2 1 10 10 C 1.47081 * 120.88401 * 26.56538 * 9 7 2 11 11 C 1.53699 * 108.27591 * 128.75852 * 10 9 7 12 12 N 1.46901 * 109.25614 * 54.08541 * 11 10 9 13 13 C 1.46898 * 110.99711 * 172.60682 * 12 11 10 14 14 C 1.50702 * 109.47650 * 314.29968 * 13 12 11 15 15 C 1.34666 * 125.98599 * 94.99691 * 14 13 12 16 16 N 1.36884 * 106.81536 * 179.97438 * 15 14 13 17 17 C 1.46501 * 126.40048 * 180.02562 * 16 15 14 18 18 C 1.52993 * 117.49933 * 188.62144 * 17 16 15 19 19 C 1.52999 * 117.50403 * 119.99286 * 17 16 15 20 20 C 1.35049 * 107.20449 * 359.97438 * 16 15 14 21 21 N 1.30495 * 108.69601 * 359.77071 * 20 16 15 22 22 C 1.46900 * 111.26621 * 296.75609 * 12 11 10 23 23 C 1.47086 * 120.88084 * 206.85031 * 9 7 2 24 24 H 0.96996 * 120.00064 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.63185 * 248.52760 * 10 9 7 26 26 H 1.08998 * 109.62646 * 9.11111 * 10 9 7 27 27 H 1.09000 * 109.64977 * 294.07914 * 11 10 9 28 28 H 1.09005 * 109.44272 * 173.96322 * 11 10 9 29 29 H 1.09004 * 109.47314 * 74.30140 * 13 12 11 30 30 H 1.09001 * 109.46821 * 194.29764 * 13 12 11 31 31 H 1.08002 * 126.59826 * 359.97438 * 15 14 13 32 32 H 1.09001 * 115.54723 * 334.32069 * 17 16 15 33 33 H 1.09003 * 117.50297 * 359.97438 * 18 17 16 34 34 H 1.09003 * 117.50449 * 145.01862 * 18 17 16 35 35 H 1.08995 * 117.49624 * 214.97738 * 19 17 16 36 36 H 1.08994 * 117.49513 * 359.97438 * 19 17 16 37 37 H 1.08002 * 125.64669 * 180.02562 * 20 16 15 38 38 H 1.09002 * 109.49350 * 303.14487 * 22 12 11 39 39 H 1.08999 * 109.49121 * 183.06761 * 22 12 11 40 40 H 1.08998 * 109.62394 * 350.89040 * 23 9 7 41 41 H 1.09001 * 109.62891 * 111.47464 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0554 -1.2221 0.2722 9 7 1.3715 -2.3617 -0.3490 10 6 0.2076 -2.3409 -1.2481 11 6 0.4531 -3.3537 -2.3778 12 7 0.7626 -4.6656 -1.7936 13 6 0.8319 -5.7015 -2.8329 14 6 -0.3440 -5.5580 -3.7645 15 6 -0.3510 -4.8877 -4.9324 16 7 -1.6115 -5.0105 -5.4519 17 6 -2.0901 -4.4439 -6.7153 18 6 -3.5894 -4.5335 -7.0066 19 6 -2.6063 -5.4181 -7.7760 20 6 -2.3311 -5.7526 -4.5829 21 7 -1.5651 -6.0808 -3.5787 22 6 2.0052 -4.6207 -1.0114 23 6 1.8271 -3.6605 0.1695 24 1 -0.4850 0.8400 0.0004 25 1 -0.6889 -2.6172 -0.6930 26 1 0.0879 -1.3427 -1.6691 27 1 1.2905 -3.0222 -2.9917 28 1 -0.4418 -3.4325 -2.9953 29 1 1.7579 -5.5891 -3.3968 30 1 0.8077 -6.6863 -2.3663 31 1 0.4784 -4.3555 -5.3744 32 1 -1.5619 -3.5557 -7.0621 33 1 -4.2197 -5.0144 -6.2586 34 1 -4.0480 -3.7042 -7.5453 35 1 -2.4181 -5.1707 -8.8207 36 1 -2.5894 -6.4807 -7.5341 37 1 -3.3676 -6.0319 -4.7016 38 1 2.8210 -4.2714 -1.6443 39 1 2.2358 -5.6182 -0.6375 40 1 2.7786 -3.5350 0.6861 41 1 1.0833 -4.0612 0.8582 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001308561262.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:36 Heat of formation + Delta-G solvation = 133.661803 kcal Electronic energy + Delta-G solvation = -21557.167689 eV Core-core repulsion = 18475.356771 eV Total energy + Delta-G solvation = -3081.810918 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.11595 -38.09094 -37.37883 -34.41111 -32.08710 -31.33861 -29.82261 -29.52889 -26.96328 -24.56970 -23.68636 -22.94863 -22.45336 -22.19818 -20.65159 -19.54259 -18.83745 -17.66185 -16.64836 -15.80833 -15.36676 -14.70493 -14.51159 -14.27751 -14.14702 -14.10788 -13.62349 -13.34133 -13.16229 -12.93337 -12.77597 -12.10363 -11.95500 -11.57353 -11.47685 -11.22495 -11.11671 -10.97734 -10.69782 -10.41436 -10.18241 -9.99588 -9.76036 -9.65209 -9.50552 -9.29677 -8.43086 -8.27073 -7.56946 -6.56993 -5.70263 -3.11425 2.00170 2.59641 3.18655 3.34979 3.41255 3.47724 3.49497 4.08134 4.30911 4.39676 4.55263 4.62241 4.75718 4.81663 5.10413 5.21887 5.34801 5.36194 5.45859 5.53138 5.55608 5.58328 5.86341 6.00264 6.05363 6.16642 6.28894 6.30361 6.42341 6.47184 6.67162 6.81534 6.85148 7.06125 7.23359 7.37721 7.76562 7.78521 7.84803 7.94984 8.23683 8.51677 9.29224 9.93215 10.52862 11.38242 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.021116 B = 0.004402 C = 0.003859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.682389 B = 6359.202609 C = 7253.783921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.000 4.000 3 Si 0.901 3.099 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.279 1.279 7 C -0.250 4.250 8 H 0.066 0.934 9 N -0.596 5.596 10 C 0.180 3.820 11 C 0.039 3.961 12 N -0.525 5.525 13 C 0.137 3.863 14 C 0.021 3.979 15 C -0.047 4.047 16 N -0.434 5.434 17 C 0.058 3.942 18 C -0.172 4.172 19 C -0.180 4.180 20 C 0.174 3.826 21 N -0.471 5.471 22 C 0.045 3.955 23 C 0.149 3.851 24 H 0.253 0.747 25 H 0.024 0.976 26 H 0.085 0.915 27 H 0.019 0.981 28 H 0.061 0.939 29 H 0.036 0.964 30 H 0.080 0.920 31 H 0.170 0.830 32 H 0.140 0.860 33 H 0.105 0.895 34 H 0.112 0.888 35 H 0.109 0.891 36 H 0.102 0.898 37 H 0.199 0.801 38 H 0.026 0.974 39 H 0.062 0.938 40 H 0.055 0.945 41 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.149 -10.876 -16.207 19.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.198 4.198 3 Si 0.732 3.268 4 H -0.216 1.216 5 H -0.218 1.218 6 H -0.205 1.205 7 C -0.379 4.379 8 H 0.083 0.917 9 N -0.320 5.320 10 C 0.054 3.946 11 C -0.090 4.090 12 N -0.250 5.250 13 C 0.008 3.992 14 C -0.108 4.108 15 C -0.180 4.180 16 N -0.116 5.116 17 C -0.047 4.047 18 C -0.210 4.210 19 C -0.218 4.218 20 C -0.108 4.108 21 N -0.189 5.189 22 C -0.084 4.084 23 C 0.022 3.978 24 H 0.063 0.937 25 H 0.043 0.957 26 H 0.103 0.897 27 H 0.037 0.963 28 H 0.079 0.921 29 H 0.054 0.946 30 H 0.098 0.902 31 H 0.187 0.813 32 H 0.158 0.842 33 H 0.124 0.876 34 H 0.131 0.869 35 H 0.127 0.873 36 H 0.121 0.879 37 H 0.215 0.785 38 H 0.045 0.955 39 H 0.080 0.920 40 H 0.073 0.927 41 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -4.893 -11.262 -15.287 19.607 hybrid contribution 1.170 1.659 -1.360 2.444 sum -3.723 -9.602 -16.647 19.575 Atomic orbital electron populations 1.70050 1.05190 1.25292 1.54306 1.25021 0.95274 0.98267 1.01254 0.86298 0.79117 0.83867 0.77567 1.21626 1.21790 1.20463 1.19223 0.92557 0.84891 1.41255 0.91657 1.44165 1.34405 1.01283 1.52103 1.20927 0.88853 0.96367 0.88403 1.22967 0.98444 0.89255 0.98362 1.62029 1.34316 1.05647 1.22988 1.20330 0.91082 0.97161 0.90589 1.20469 0.94461 1.01104 0.94780 1.22416 0.88398 1.08587 0.98561 1.44834 1.10192 1.39859 1.16739 1.21962 0.97836 0.99879 0.84989 1.23392 0.91043 1.03274 1.03261 1.23492 1.02742 0.98003 0.97530 1.24834 0.99518 0.98508 0.87897 1.70206 1.02397 1.23434 1.22817 1.22621 0.89507 0.99416 0.96884 1.20972 0.97683 0.86472 0.92643 0.93733 0.95743 0.89722 0.96270 0.92053 0.94571 0.90163 0.81269 0.84200 0.87631 0.86924 0.87277 0.87924 0.78456 0.95539 0.91962 0.92670 0.95636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.17 11.16 55.49 0.62 -26.55 16 2 C 0.00 0.00 4.93 -17.43 -0.09 -0.08 16 3 Si 0.90 22.17 29.59 -169.99 -5.03 17.14 16 4 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 5 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.25 -7.12 9.63 -15.06 -0.15 -7.26 16 8 H 0.07 1.82 7.88 -52.48 -0.41 1.40 16 9 N -0.60 -15.92 3.03 -171.73 -0.52 -16.44 16 10 C 0.18 4.68 5.45 -3.36 -0.02 4.66 16 11 C 0.04 0.83 5.05 -3.46 -0.02 0.81 16 12 N -0.52 -10.43 4.77 -235.46 -1.12 -11.55 16 13 C 0.14 2.28 5.81 -4.98 -0.03 2.25 16 14 C 0.02 0.35 5.03 -82.86 -0.42 -0.07 16 15 C -0.05 -0.66 10.21 -16.56 -0.17 -0.83 16 16 N -0.43 -5.24 3.09 -111.46 -0.34 -5.58 16 17 C 0.06 0.48 6.89 -67.93 -0.47 0.01 16 18 C -0.17 -1.05 9.98 -26.73 -0.27 -1.32 16 19 C -0.18 -1.08 10.39 -26.73 -0.28 -1.36 16 20 C 0.17 2.31 11.89 -90.37 -1.07 1.23 16 21 N -0.47 -7.99 11.25 -10.87 -0.12 -8.11 16 22 C 0.05 0.87 5.58 -3.70 -0.02 0.85 16 23 C 0.15 3.37 6.69 -3.60 -0.02 3.35 16 24 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 25 H 0.02 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.08 2.40 6.12 -51.93 -0.32 2.08 16 27 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.06 1.29 5.75 -51.93 -0.30 0.99 16 29 H 0.04 0.55 8.08 -51.93 -0.42 0.13 16 30 H 0.08 1.30 8.14 -51.93 -0.42 0.87 16 31 H 0.17 2.06 8.06 -52.49 -0.42 1.64 16 32 H 0.14 1.01 8.14 -51.93 -0.42 0.58 16 33 H 0.11 0.64 6.84 -51.93 -0.36 0.28 16 34 H 0.11 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.11 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.20 1.90 7.03 -52.49 -0.37 1.53 16 38 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.06 1.03 8.11 -51.93 -0.42 0.61 16 40 H 0.05 1.18 7.95 -51.93 -0.41 0.77 16 41 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 329.16 15.07 4.96 4.96 Total: -1.00 -33.91 329.16 -10.94 -44.85 By element: Atomic # 1 Polarization: 5.40 SS G_CDS: -6.37 Total: -0.97 kcal Atomic # 6 Polarization: 5.26 SS G_CDS: -3.01 Total: 2.25 kcal Atomic # 7 Polarization: -66.74 SS G_CDS: -1.49 Total: -68.23 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.03 Total: 17.14 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -33.91 -10.94 -44.85 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001308561262.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 178.516 kcal (2) G-P(sol) polarization free energy of solvation -33.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 144.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.854 kcal (6) G-S(sol) free energy of system = (1) + (5) 133.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds