Wall clock time and date at job start Mon Mar 30 2020 01:39:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86805 * 119.99842 * 2 1 4 4 H 1.48502 * 109.46715 * 270.00101 * 3 2 1 5 5 H 1.48499 * 109.46981 * 29.99667 * 3 2 1 6 6 H 1.48489 * 109.47231 * 150.00128 * 3 2 1 7 7 C 1.38810 * 120.00188 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00053 * 196.88456 * 7 2 1 9 9 N 1.36930 * 119.99851 * 17.17041 * 7 2 1 10 10 C 1.47081 * 120.88401 * 26.56538 * 9 7 2 11 11 C 1.53699 * 108.27591 * 128.75852 * 10 9 7 12 12 N 1.46901 * 109.25614 * 54.08541 * 11 10 9 13 13 C 1.46898 * 110.99711 * 172.60682 * 12 11 10 14 14 C 1.50702 * 109.47650 * 314.29968 * 13 12 11 15 15 C 1.34666 * 125.98599 * 94.99691 * 14 13 12 16 16 N 1.36884 * 106.81536 * 179.97438 * 15 14 13 17 17 C 1.46501 * 126.40048 * 180.02562 * 16 15 14 18 18 C 1.52993 * 117.49933 * 188.62144 * 17 16 15 19 19 C 1.52999 * 117.50403 * 119.99286 * 17 16 15 20 20 C 1.35049 * 107.20449 * 359.97438 * 16 15 14 21 21 N 1.30495 * 108.69601 * 359.77071 * 20 16 15 22 22 C 1.46900 * 111.26621 * 296.75609 * 12 11 10 23 23 C 1.47086 * 120.88084 * 206.85031 * 9 7 2 24 24 H 0.96996 * 120.00064 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.63185 * 248.52760 * 10 9 7 26 26 H 1.08998 * 109.62646 * 9.11111 * 10 9 7 27 27 H 1.09000 * 109.64977 * 294.07914 * 11 10 9 28 28 H 1.09005 * 109.44272 * 173.96322 * 11 10 9 29 29 H 1.09004 * 109.47314 * 74.30140 * 13 12 11 30 30 H 1.09001 * 109.46821 * 194.29764 * 13 12 11 31 31 H 1.08002 * 126.59826 * 359.97438 * 15 14 13 32 32 H 1.09001 * 115.54723 * 334.32069 * 17 16 15 33 33 H 1.09003 * 117.50297 * 359.97438 * 18 17 16 34 34 H 1.09003 * 117.50449 * 145.01862 * 18 17 16 35 35 H 1.08995 * 117.49624 * 214.97738 * 19 17 16 36 36 H 1.08994 * 117.49513 * 359.97438 * 19 17 16 37 37 H 1.08002 * 125.64669 * 180.02562 * 20 16 15 38 38 H 1.09002 * 109.49350 * 303.14487 * 22 12 11 39 39 H 1.08999 * 109.49121 * 183.06761 * 22 12 11 40 40 H 1.08998 * 109.62394 * 350.89040 * 23 9 7 41 41 H 1.09001 * 109.62891 * 111.47464 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0554 -1.2221 0.2722 9 7 1.3715 -2.3617 -0.3490 10 6 0.2076 -2.3409 -1.2481 11 6 0.4531 -3.3537 -2.3778 12 7 0.7626 -4.6656 -1.7936 13 6 0.8319 -5.7015 -2.8329 14 6 -0.3440 -5.5580 -3.7645 15 6 -0.3510 -4.8877 -4.9324 16 7 -1.6115 -5.0105 -5.4519 17 6 -2.0901 -4.4439 -6.7153 18 6 -3.5894 -4.5335 -7.0066 19 6 -2.6063 -5.4181 -7.7760 20 6 -2.3311 -5.7526 -4.5829 21 7 -1.5651 -6.0808 -3.5787 22 6 2.0052 -4.6207 -1.0114 23 6 1.8271 -3.6605 0.1695 24 1 -0.4850 0.8400 0.0004 25 1 -0.6889 -2.6172 -0.6930 26 1 0.0879 -1.3427 -1.6691 27 1 1.2905 -3.0222 -2.9917 28 1 -0.4418 -3.4325 -2.9953 29 1 1.7579 -5.5891 -3.3968 30 1 0.8077 -6.6863 -2.3663 31 1 0.4784 -4.3555 -5.3744 32 1 -1.5619 -3.5557 -7.0621 33 1 -4.2197 -5.0144 -6.2586 34 1 -4.0480 -3.7042 -7.5453 35 1 -2.4181 -5.1707 -8.8207 36 1 -2.5894 -6.4807 -7.5341 37 1 -3.3676 -6.0319 -4.7016 38 1 2.8210 -4.2714 -1.6443 39 1 2.2358 -5.6182 -0.6375 40 1 2.7786 -3.5350 0.6861 41 1 1.0833 -4.0612 0.8582 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001308561262.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:35 Heat of formation + Delta-G solvation = 112.351459 kcal Electronic energy + Delta-G solvation = -21558.091775 eV Core-core repulsion = 18475.356771 eV Total energy + Delta-G solvation = -3082.735004 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.12707 -39.63335 -38.19180 -36.23286 -33.58356 -32.75071 -31.63283 -30.96413 -28.58733 -26.26258 -24.52412 -24.24994 -24.02551 -23.35467 -21.62432 -20.96019 -20.36335 -18.71096 -18.38944 -17.13703 -16.55918 -16.31684 -15.87393 -15.68596 -15.43346 -15.25360 -15.08007 -14.95607 -14.78700 -14.44913 -14.04508 -13.37797 -13.12653 -13.03558 -12.84308 -12.61548 -12.50038 -12.31736 -12.22002 -12.03426 -11.90404 -11.64571 -11.59738 -11.42036 -10.85643 -10.59552 -10.22731 -9.41577 -9.09426 -8.67832 -7.87108 -5.33179 1.02006 1.46490 1.47559 1.57450 1.77317 2.07565 2.51019 2.76447 3.21330 3.29565 3.47921 3.59412 3.69329 3.80428 3.87993 4.00299 4.18531 4.29863 4.36258 4.38228 4.56717 4.60385 4.67366 4.68661 4.75541 4.76098 4.91108 4.92031 4.95168 5.09782 5.10688 5.19106 5.32424 5.35539 5.60765 5.64366 5.73103 6.22314 6.32552 6.33379 6.38559 7.12083 7.17433 7.82814 8.39056 9.19943 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.021116 B = 0.004402 C = 0.003859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.682389 B = 6359.202609 C = 7253.783921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.053 4.053 3 Si 0.972 3.028 4 H -0.284 1.284 5 H -0.295 1.295 6 H -0.266 1.266 7 C -0.265 4.265 8 H 0.071 0.929 9 N -0.614 5.614 10 C 0.191 3.809 11 C 0.066 3.934 12 N -0.542 5.542 13 C 0.143 3.857 14 C -0.012 4.012 15 C -0.045 4.045 16 N -0.428 5.428 17 C 0.027 3.973 18 C -0.163 4.163 19 C -0.162 4.162 20 C 0.175 3.825 21 N -0.518 5.518 22 C 0.056 3.944 23 C 0.144 3.856 24 H 0.250 0.750 25 H -0.014 1.014 26 H 0.055 0.945 27 H 0.021 0.979 28 H 0.064 0.936 29 H 0.055 0.945 30 H 0.084 0.916 31 H 0.186 0.814 32 H 0.150 0.850 33 H 0.106 0.894 34 H 0.130 0.870 35 H 0.129 0.871 36 H 0.097 0.903 37 H 0.228 0.772 38 H 0.031 0.969 39 H 0.095 0.905 40 H 0.066 0.934 41 H 0.010 0.990 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.527 -11.267 -18.203 21.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.248 4.248 3 Si 0.800 3.200 4 H -0.210 1.210 5 H -0.221 1.221 6 H -0.191 1.191 7 C -0.395 4.395 8 H 0.089 0.911 9 N -0.338 5.338 10 C 0.065 3.935 11 C -0.064 4.064 12 N -0.267 5.267 13 C 0.015 3.985 14 C -0.141 4.141 15 C -0.179 4.179 16 N -0.109 5.109 17 C -0.077 4.077 18 C -0.200 4.200 19 C -0.200 4.200 20 C -0.107 4.107 21 N -0.236 5.236 22 C -0.073 4.073 23 C 0.018 3.982 24 H 0.059 0.941 25 H 0.004 0.996 26 H 0.073 0.927 27 H 0.039 0.961 28 H 0.082 0.918 29 H 0.073 0.927 30 H 0.102 0.898 31 H 0.203 0.797 32 H 0.167 0.833 33 H 0.125 0.875 34 H 0.148 0.852 35 H 0.148 0.852 36 H 0.115 0.885 37 H 0.244 0.756 38 H 0.049 0.951 39 H 0.113 0.887 40 H 0.084 0.916 41 H 0.028 0.972 Dipole moment (debyes) X Y Z Total from point charges -4.260 -11.684 -17.309 21.313 hybrid contribution 0.901 1.721 -0.752 2.083 sum -3.358 -9.963 -18.061 20.898 Atomic orbital electron populations 1.70228 1.06884 1.25848 1.55596 1.25861 0.96048 1.01695 1.01216 0.85193 0.78067 0.79137 0.77620 1.21043 1.22149 1.19082 1.19607 0.93018 0.85928 1.40949 0.91102 1.44449 1.34309 1.02356 1.52675 1.20639 0.87552 0.96131 0.89201 1.22505 0.98605 0.89121 0.96154 1.61928 1.34935 1.05293 1.24563 1.20296 0.92336 0.95806 0.90057 1.20530 0.94563 1.03034 0.95940 1.22641 0.89560 1.07735 0.98001 1.45024 1.09369 1.38899 1.17591 1.22370 0.99741 1.01283 0.84261 1.23533 0.89738 1.03734 1.03036 1.23539 1.01308 0.97275 0.97887 1.25351 1.00369 0.97769 0.87212 1.70125 1.03248 1.25297 1.24963 1.22482 0.89338 1.00031 0.95447 1.21143 0.97456 0.85529 0.94069 0.94123 0.99607 0.92678 0.96093 0.91804 0.92705 0.89805 0.79724 0.83272 0.87547 0.85194 0.85246 0.88467 0.75566 0.95105 0.88695 0.91602 0.97162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.16 11.16 21.65 0.24 -57.92 16 2 C -0.05 -3.08 4.93 84.86 0.42 -2.67 16 3 Si 0.97 45.92 29.59 68.60 2.03 47.95 16 4 H -0.28 -13.07 7.11 99.48 0.71 -12.37 16 5 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16 6 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 7 C -0.27 -15.25 9.63 84.03 0.81 -14.44 16 8 H 0.07 3.92 7.88 -2.91 -0.02 3.89 16 9 N -0.61 -33.36 3.03 -697.23 -2.11 -35.47 16 10 C 0.19 10.26 5.45 86.50 0.47 10.74 16 11 C 0.07 2.82 5.05 86.54 0.44 3.26 16 12 N -0.54 -21.20 4.77 -898.86 -4.29 -25.49 16 13 C 0.14 4.58 5.81 85.56 0.50 5.08 16 14 C -0.01 -0.38 5.03 41.39 0.21 -0.17 16 15 C -0.04 -1.20 10.21 83.09 0.85 -0.35 16 16 N -0.43 -9.71 3.09 -506.55 -1.56 -11.27 16 17 C 0.03 0.38 6.89 44.99 0.31 0.69 16 18 C -0.16 -1.55 9.98 30.59 0.31 -1.25 16 19 C -0.16 -1.50 10.39 30.60 0.32 -1.18 16 20 C 0.18 4.45 11.89 180.26 2.14 6.59 16 21 N -0.52 -17.38 11.25 -188.32 -2.12 -19.50 16 22 C 0.06 2.07 5.58 86.38 0.48 2.56 16 23 C 0.14 6.49 6.69 86.35 0.58 7.07 16 24 H 0.25 14.88 8.31 -92.71 -0.77 14.11 16 25 H -0.01 -0.85 8.14 -2.39 -0.02 -0.87 16 26 H 0.05 3.25 6.12 -2.39 -0.01 3.24 16 27 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 28 H 0.06 2.71 5.75 -2.38 -0.01 2.69 16 29 H 0.05 1.54 8.08 -2.38 -0.02 1.52 16 30 H 0.08 2.60 8.14 -2.39 -0.02 2.58 16 31 H 0.19 4.19 8.06 -2.91 -0.02 4.16 16 32 H 0.15 1.83 8.14 -2.39 -0.02 1.81 16 33 H 0.11 1.01 6.84 -2.39 -0.02 1.00 16 34 H 0.13 0.81 8.14 -2.39 -0.02 0.79 16 35 H 0.13 0.69 8.14 -2.39 -0.02 0.67 16 36 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.23 3.96 7.03 -2.91 -0.02 3.94 16 38 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 39 H 0.09 2.91 8.11 -2.39 -0.02 2.89 16 40 H 0.07 2.78 7.95 -2.39 -0.02 2.76 16 41 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 Total: -1.00 -74.97 329.16 1.02 -73.95 By element: Atomic # 1 Polarization: 10.82 SS G_CDS: 1.01 Total: 11.83 kcal Atomic # 6 Polarization: 8.09 SS G_CDS: 7.83 Total: 15.92 kcal Atomic # 7 Polarization: -139.81 SS G_CDS: -9.84 Total: -149.65 kcal Atomic # 14 Polarization: 45.92 SS G_CDS: 2.03 Total: 47.95 kcal Total: -74.97 1.02 -73.95 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001308561262.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 186.306 kcal (2) G-P(sol) polarization free energy of solvation -74.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.954 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds