Wall clock time and date at job start Mon Mar 30 2020 02:00:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.31792 * 119.12429 * 2 1 4 4 C 1.32339 * 120.81531 * 179.97438 * 3 2 1 5 5 C 1.38597 * 119.10646 * 359.97438 * 4 3 2 6 6 C 1.50697 * 120.79998 * 179.97438 * 5 4 3 7 7 N 1.46896 * 109.47483 * 89.99512 * 6 5 4 8 8 C 1.46899 * 111.00213 * 180.02562 * 7 6 5 9 9 C 1.53044 * 109.46001 * 275.02663 * 8 7 6 10 10 C 1.53190 * 109.31232 * 178.59651 * 9 8 7 11 11 N 1.46924 * 108.76168 * 54.66086 * 10 9 8 12 12 C 1.36944 * 120.63200 * 126.40245 * 11 10 9 13 13 H 1.07997 * 119.99485 * 331.82674 * 12 11 10 14 14 C 1.38813 * 119.99899 * 151.82820 * 12 11 10 15 15 N 1.31622 * 120.00111 * 343.06276 * 14 12 11 16 16 Si 1.86801 * 119.99816 * 163.07300 * 14 12 11 17 17 H 1.48494 * 109.46881 * 359.97438 * 16 14 12 18 18 H 1.48498 * 109.47388 * 119.99755 * 16 14 12 19 19 H 1.48500 * 109.46698 * 239.99828 * 16 14 12 20 20 C 1.46925 * 118.73877 * 306.37968 * 11 10 9 21 21 C 1.53038 * 109.46257 * 154.97628 * 8 7 6 22 22 C 1.38596 * 118.39838 * 359.97438 * 5 4 3 23 23 N 1.31801 * 119.11819 * 179.97438 * 2 1 3 24 24 H 1.08999 * 109.46939 * 90.00251 * 1 2 3 25 25 H 1.09000 * 109.47577 * 210.00552 * 1 2 3 26 26 H 1.09004 * 109.46997 * 330.00237 * 1 2 3 27 27 H 1.08001 * 120.44154 * 180.02562 * 4 3 2 28 28 H 1.09002 * 109.47301 * 210.00014 * 6 5 4 29 29 H 1.09007 * 109.46806 * 329.99407 * 6 5 4 30 30 H 1.00902 * 111.00022 * 56.04419 * 7 6 5 31 31 H 1.08998 * 109.45871 * 35.00054 * 8 7 6 32 32 H 1.08999 * 109.49803 * 298.56746 * 9 8 7 33 33 H 1.09002 * 109.49036 * 58.66258 * 9 8 7 34 34 H 1.08992 * 109.60385 * 294.87130 * 10 9 8 35 35 H 1.08999 * 109.70281 * 174.50685 * 10 9 8 36 36 H 0.96996 * 119.99924 * 179.97438 * 15 14 12 37 37 H 1.08996 * 109.58838 * 293.81885 * 20 11 10 38 38 H 1.09007 * 109.70280 * 173.46766 * 20 11 10 39 39 H 1.09009 * 109.49452 * 301.33530 * 21 8 7 40 40 H 1.08998 * 109.50136 * 61.42859 * 21 8 7 41 41 H 1.07999 * 120.44623 * 179.97438 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1484 1.1513 0.0000 4 6 3.4712 1.1903 0.0005 5 6 4.1809 -0.0002 0.0016 6 6 5.6878 -0.0002 0.0016 7 7 6.1775 0.0011 1.3865 8 6 7.6460 0.0017 1.4257 9 6 8.1596 -1.4357 1.3141 10 6 9.6915 -1.4282 1.3200 11 7 10.1559 -0.7130 2.5165 12 6 11.0420 -1.2997 3.3801 13 1 11.0678 -2.3748 3.4794 14 6 11.9070 -0.5126 4.1279 15 7 12.1204 0.7400 3.7843 16 14 12.7686 -1.2312 5.6215 17 1 12.3617 -2.6490 5.7930 18 1 14.2390 -1.1577 5.4278 19 1 12.3893 -0.4580 6.8312 20 6 9.6520 0.6440 2.7684 21 6 8.1206 0.6133 2.7458 22 6 3.4711 -1.1906 0.0026 23 7 2.1483 -1.1514 0.0005 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3634 -0.8899 0.5139 26 1 -0.3633 0.8900 0.5138 27 1 3.9907 2.1372 0.0009 28 1 6.0512 -0.8907 -0.5114 29 1 6.0512 0.8893 -0.5131 30 1 5.8020 -0.7797 1.9036 31 1 8.0312 0.5906 0.5934 32 1 7.7951 -2.0190 2.1597 33 1 7.8017 -1.8786 0.3847 34 1 10.0581 -0.9227 0.4268 35 1 10.0639 -2.4524 1.3391 36 1 12.7245 1.2900 4.3071 37 1 10.0155 1.3185 1.9933 38 1 9.9963 0.9887 3.7435 39 1 7.7350 1.6290 2.8356 40 1 7.7565 0.0106 3.5778 41 1 3.9906 -2.1375 0.0031 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001318630720.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:27 Heat of formation + Delta-G solvation = 63.039898 kcal Electronic energy + Delta-G solvation = -20895.349186 eV Core-core repulsion = 17810.475872 eV Total energy + Delta-G solvation = -3084.873313 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.25405 -38.23435 -35.71740 -33.87565 -33.62411 -31.91213 -30.32572 -29.69409 -28.32375 -25.30931 -24.83756 -24.01726 -22.23831 -21.85056 -21.38243 -19.30462 -17.91272 -17.01221 -16.78740 -15.55698 -15.42279 -14.89971 -14.63288 -14.21653 -13.84619 -13.73905 -13.49830 -13.44402 -13.04715 -12.87375 -12.78159 -12.64294 -12.37798 -12.13620 -11.46246 -11.16312 -10.99047 -10.94986 -10.80461 -10.74139 -10.29243 -10.23469 -10.01636 -9.77318 -9.62443 -9.38882 -9.35271 -8.51071 -8.18039 -6.68756 -5.80121 -3.22750 0.67319 0.91503 3.36230 3.44282 3.46315 3.50632 3.75843 3.96284 4.32964 4.45073 4.48540 4.63053 4.74463 5.05293 5.22561 5.25917 5.26784 5.39599 5.41005 5.46240 5.52856 5.64128 5.66368 5.80479 5.84376 6.04016 6.23531 6.26715 6.42911 6.52694 6.58069 6.66526 6.78502 6.81156 6.90704 7.21681 7.34042 7.51188 7.67144 7.78971 7.90308 8.44321 9.20460 9.83692 10.40232 11.28450 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.044069 B = 0.003020 C = 0.002996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 635.215679 B = 9270.740570 C = 9343.524421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.307 3.693 3 N -0.520 5.520 4 C 0.170 3.830 5 C -0.187 4.187 6 C 0.106 3.894 7 N -0.683 5.683 8 C 0.096 3.904 9 C -0.160 4.160 10 C 0.149 3.851 11 N -0.592 5.592 12 C -0.252 4.252 13 H 0.065 0.935 14 C 0.002 3.998 15 N -0.902 5.902 16 Si 0.901 3.099 17 H -0.278 1.278 18 H -0.290 1.290 19 H -0.289 1.289 20 C 0.171 3.829 21 C -0.125 4.125 22 C 0.154 3.846 23 N -0.520 5.520 24 H 0.084 0.916 25 H 0.084 0.916 26 H 0.084 0.916 27 H 0.170 0.830 28 H 0.044 0.956 29 H 0.085 0.915 30 H 0.338 0.662 31 H 0.071 0.929 32 H 0.059 0.941 33 H 0.045 0.955 34 H 0.016 0.984 35 H 0.052 0.948 36 H 0.253 0.747 37 H 0.017 0.983 38 H 0.088 0.912 39 H 0.055 0.945 40 H 0.053 0.947 41 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.131 -1.008 -8.668 20.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.040 3.960 3 N -0.234 5.234 4 C 0.004 3.996 5 C -0.191 4.191 6 C -0.025 4.025 7 N -0.313 5.313 8 C -0.013 4.013 9 C -0.201 4.201 10 C 0.022 3.978 11 N -0.315 5.315 12 C -0.382 4.382 13 H 0.083 0.917 14 C -0.197 4.197 15 N -0.547 5.547 16 Si 0.731 3.269 17 H -0.203 1.203 18 H -0.217 1.217 19 H -0.215 1.215 20 C 0.044 3.956 21 C -0.165 4.165 22 C -0.012 4.012 23 N -0.234 5.234 24 H 0.102 0.898 25 H 0.103 0.897 26 H 0.103 0.897 27 H 0.187 0.813 28 H 0.062 0.938 29 H 0.103 0.897 30 H 0.155 0.845 31 H 0.089 0.911 32 H 0.078 0.922 33 H 0.064 0.936 34 H 0.034 0.966 35 H 0.071 0.929 36 H 0.063 0.937 37 H 0.035 0.965 38 H 0.106 0.894 39 H 0.073 0.927 40 H 0.072 0.928 41 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -19.069 -0.206 -8.521 20.887 hybrid contribution 1.740 -1.252 0.494 2.200 sum -17.330 -1.458 -8.026 19.154 Atomic orbital electron populations 1.20544 0.85883 1.04106 1.03710 1.23262 0.98214 0.83648 0.90906 1.68301 1.10156 1.30408 1.14568 1.23178 0.89086 0.98562 0.88790 1.21666 0.98695 0.95496 1.03278 1.20739 0.87907 1.01989 0.91827 1.60824 1.09496 1.49942 1.11016 1.21574 0.84357 0.95704 0.99683 1.22701 1.00367 0.97119 0.99933 1.20803 0.90426 0.96426 0.90130 1.44083 1.50069 1.14612 1.22776 1.19216 1.11234 0.91526 1.16236 0.91750 1.25050 0.97261 0.96603 1.00740 1.70039 1.38100 1.07544 1.38991 0.86238 0.79029 0.78535 0.83059 1.20290 1.21725 1.21521 1.20800 0.87152 0.85854 1.01748 1.22185 0.99768 0.99293 0.95224 1.23158 0.89517 0.98343 0.90226 1.68267 1.09977 1.30522 1.14648 0.89790 0.89726 0.89676 0.81325 0.93798 0.89696 0.84461 0.91067 0.92186 0.93600 0.96597 0.92922 0.93664 0.96495 0.89351 0.92677 0.92848 0.81794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.66 10.32 36.00 0.37 -0.28 16 2 C 0.31 3.50 7.64 -157.19 -1.20 2.30 16 3 N -0.52 -6.25 10.33 -10.72 -0.11 -6.36 16 4 C 0.17 1.87 11.01 -17.20 -0.19 1.68 16 5 C -0.19 -1.97 5.43 -104.36 -0.57 -2.53 16 6 C 0.11 1.11 5.66 -4.98 -0.03 1.09 16 7 N -0.68 -8.86 6.24 -107.95 -0.67 -9.53 16 8 C 0.10 1.50 2.43 -67.67 -0.16 1.34 16 9 C -0.16 -2.60 5.33 -26.61 -0.14 -2.74 16 10 C 0.15 3.04 6.52 -3.71 -0.02 3.02 16 11 N -0.59 -14.61 2.99 -172.33 -0.52 -15.13 16 12 C -0.25 -6.88 9.58 -15.06 -0.14 -7.03 16 13 H 0.06 1.73 7.89 -52.49 -0.41 1.32 16 14 C 0.00 0.06 4.92 -17.43 -0.09 -0.03 16 15 N -0.90 -26.07 11.19 55.49 0.62 -25.44 16 16 Si 0.90 21.61 29.59 -169.99 -5.03 16.58 16 17 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 18 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 19 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 20 C 0.17 4.00 5.30 -3.71 -0.02 3.98 16 21 C -0.12 -2.34 5.69 -26.62 -0.15 -2.50 16 22 C 0.15 1.63 11.01 -17.20 -0.19 1.44 16 23 N -0.52 -6.16 10.34 -10.73 -0.11 -6.27 16 24 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 27 H 0.17 1.53 8.06 -52.49 -0.42 1.11 16 28 H 0.04 0.44 7.37 -51.93 -0.38 0.06 16 29 H 0.08 0.87 8.02 -51.92 -0.42 0.45 16 30 H 0.34 4.32 8.47 -39.29 -0.33 3.98 16 31 H 0.07 1.15 7.80 -51.93 -0.40 0.74 16 32 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 33 H 0.05 0.63 7.42 -51.93 -0.39 0.25 16 34 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.05 1.06 7.93 -51.93 -0.41 0.65 16 36 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 37 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 38 H 0.09 2.34 6.07 -51.93 -0.31 2.03 16 39 H 0.05 0.98 8.14 -51.92 -0.42 0.56 16 40 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 41 H 0.16 1.37 8.06 -52.49 -0.42 0.94 16 LS Contribution 333.36 15.07 5.02 5.02 Total: -1.00 -30.52 333.36 -9.76 -40.28 By element: Atomic # 1 Polarization: 7.56 SS G_CDS: -6.43 Total: 1.13 kcal Atomic # 6 Polarization: 2.26 SS G_CDS: -2.53 Total: -0.27 kcal Atomic # 7 Polarization: -61.95 SS G_CDS: -0.79 Total: -62.74 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.03 Total: 16.58 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -30.52 -9.76 -40.28 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318630720.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.316 kcal (2) G-P(sol) polarization free energy of solvation -30.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.276 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds