Wall clock time and date at job start Mon Mar 30 2020 01:35:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42902 * 114.00011 * 2 1 4 4 H 1.09002 * 110.53693 * 332.61169 * 3 2 1 5 5 C 1.54887 * 110.48580 * 95.22537 * 3 2 1 6 6 C 1.54889 * 102.74914 * 156.61996 * 5 3 2 7 7 C 1.54267 * 104.19527 * 322.06156 * 6 5 3 8 8 C 1.53876 * 106.59921 * 23.60413 * 7 6 5 9 9 H 1.09004 * 110.03229 * 240.66743 * 8 7 6 10 10 C 1.52999 * 110.02815 * 119.28933 * 8 7 6 11 11 N 1.46498 * 109.47419 * 66.45364 * 10 8 7 12 12 C 1.38821 * 120.00147 * 179.97438 * 11 10 8 13 13 C 1.39799 * 119.58517 * 0.02562 * 12 11 10 14 14 C 1.38599 * 119.49033 * 179.97438 * 13 12 11 15 15 C 1.38387 * 118.68216 * 359.97438 * 14 13 12 16 16 C 1.40557 * 119.14754 * 0.02562 * 15 14 13 17 17 C 1.41319 * 119.78116 * 179.97438 * 16 15 14 18 18 H 1.08002 * 119.99796 * 359.97438 * 17 16 15 19 19 C 1.40024 * 119.99721 * 180.27133 * 17 16 15 20 20 N 1.30744 * 120.00003 * 359.71934 * 19 17 16 21 21 Si 1.86801 * 119.99807 * 179.71983 * 19 17 16 22 22 H 1.48501 * 109.46896 * 89.99935 * 21 19 17 23 23 H 1.48499 * 109.47039 * 210.00095 * 21 19 17 24 24 H 1.48502 * 109.46906 * 330.00002 * 21 19 17 25 25 N 1.31957 * 119.58682 * 180.25451 * 12 11 10 26 26 H 1.08999 * 109.47026 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47140 * 299.99569 * 1 2 3 28 28 H 1.08997 * 109.47535 * 59.99821 * 1 2 3 29 29 H 1.09004 * 110.75569 * 38.30414 * 5 3 2 30 30 H 1.08997 * 110.75675 * 274.93528 * 5 3 2 31 31 H 1.09001 * 110.49016 * 203.37744 * 6 5 3 32 32 H 1.08998 * 110.48557 * 80.73484 * 6 5 3 33 33 H 1.09000 * 110.03078 * 264.32440 * 7 6 5 34 34 H 1.08998 * 110.07865 * 142.91590 * 7 6 5 35 35 H 1.08996 * 109.47312 * 306.45093 * 10 8 7 36 36 H 1.09002 * 109.46799 * 186.45600 * 10 8 7 37 37 H 0.97003 * 119.99744 * 0.02562 * 11 10 8 38 38 H 1.08002 * 120.25554 * 359.97438 * 13 12 11 39 39 H 1.08003 * 120.65797 * 180.02562 * 14 13 12 40 40 H 1.07997 * 120.42499 * 180.02562 * 15 14 13 41 41 H 0.96995 * 119.99789 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3378 2.0234 -0.4696 5 6 2.3514 1.7469 1.4449 6 6 3.4600 2.8062 1.2259 7 6 4.2949 2.2439 0.0568 8 6 3.3730 1.2896 -0.7226 9 1 3.7881 0.2817 -0.7166 10 6 3.2085 1.7797 -2.1626 11 7 4.4915 1.6783 -2.8626 12 6 4.5898 2.0676 -4.1914 13 6 3.4592 2.5557 -4.8531 14 6 3.5598 2.9444 -6.1797 15 6 4.7859 2.8366 -6.8123 16 6 5.8859 2.3382 -6.0930 17 6 7.1440 2.2220 -6.7260 18 1 7.2579 2.5154 -7.7591 19 6 8.2415 1.7207 -6.0154 20 7 8.1035 1.3653 -4.7648 21 14 9.9028 1.5598 -6.8543 22 1 10.6735 2.8158 -6.6710 23 1 10.6525 0.4269 -6.2546 24 1 9.7028 1.3088 -8.3042 25 7 5.7483 1.9680 -4.8155 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 2.7298 0.9062 2.0265 30 1 1.4818 2.1922 1.9283 31 1 4.0748 2.9057 2.1205 32 1 3.0218 3.7665 0.9543 33 1 5.1568 1.6988 0.4418 34 1 4.6257 3.0555 -0.5911 35 1 2.8786 2.8185 -2.1574 36 1 2.4666 1.1654 -2.6728 37 1 5.2720 1.3384 -2.3977 38 1 2.5147 2.6294 -4.3346 39 1 2.6985 3.3245 -6.7090 40 1 4.8962 3.1318 -7.8453 41 1 8.8637 1.0177 -4.2727 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324086121.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:03 Heat of formation + Delta-G solvation = -21.018346 kcal Electronic energy + Delta-G solvation = -21153.111411 eV Core-core repulsion = 18032.300308 eV Total energy + Delta-G solvation = -3120.811103 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.158 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.41019 -38.11219 -36.41679 -34.61115 -33.17632 -30.62511 -29.97081 -28.41291 -27.92854 -26.30481 -25.29497 -23.84657 -21.47355 -20.96679 -20.31109 -19.60817 -17.35683 -16.99893 -16.48257 -15.44968 -15.06839 -14.92054 -14.66802 -14.53945 -14.12780 -14.01544 -13.47202 -13.17214 -12.91491 -12.65103 -12.37538 -12.00488 -11.87043 -11.47147 -11.38746 -11.17370 -11.14172 -10.95070 -10.78739 -10.68463 -10.59671 -10.44088 -10.28922 -9.88377 -9.59410 -9.43253 -8.82866 -7.86087 -7.45941 -6.45076 -6.28201 -4.43072 2.91588 3.13817 3.17176 3.28514 3.34313 3.62935 4.01814 4.19067 4.50735 4.67683 4.84186 4.89004 5.08122 5.20377 5.24336 5.27718 5.40696 5.46762 5.54472 5.59872 5.64782 5.78848 5.89880 5.98746 6.06197 6.14756 6.19828 6.21329 6.28292 6.38782 6.62551 6.90971 6.94008 6.99844 7.15813 7.29823 7.64810 7.86307 7.96806 8.21741 8.42155 8.74909 8.85252 9.17543 10.29660 10.45292 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.023009 B = 0.004000 C = 0.003644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.646968 B = 6998.146469 C = 7681.065471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.380 6.380 3 C 0.090 3.910 4 H 0.070 0.930 5 C -0.143 4.143 6 C -0.122 4.122 7 C -0.120 4.120 8 C -0.100 4.100 9 H 0.089 0.911 10 C 0.151 3.849 11 N -0.737 5.737 12 C 0.412 3.588 13 C -0.367 4.367 14 C -0.032 4.032 15 C -0.318 4.318 16 C 0.293 3.707 17 C -0.436 4.436 18 H 0.082 0.918 19 C 0.072 3.928 20 N -0.716 5.716 21 Si 0.904 3.096 22 H -0.270 1.270 23 H -0.278 1.278 24 H -0.262 1.262 25 N -0.531 5.531 26 H 0.083 0.917 27 H 0.038 0.962 28 H 0.042 0.958 29 H 0.076 0.924 30 H 0.064 0.936 31 H 0.067 0.933 32 H 0.066 0.934 33 H 0.068 0.932 34 H 0.076 0.924 35 H 0.050 0.950 36 H 0.050 0.950 37 H 0.396 0.604 38 H 0.088 0.912 39 H 0.092 0.908 40 H 0.094 0.906 41 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.526 0.044 11.839 15.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.299 6.299 3 C 0.032 3.968 4 H 0.088 0.912 5 C -0.181 4.181 6 C -0.160 4.160 7 C -0.158 4.158 8 C -0.119 4.119 9 H 0.107 0.893 10 C 0.025 3.975 11 N -0.373 5.373 12 C 0.172 3.828 13 C -0.394 4.394 14 C -0.057 4.057 15 C -0.341 4.341 16 C 0.166 3.834 17 C -0.468 4.468 18 H 0.101 0.899 19 C -0.153 4.153 20 N -0.338 5.338 21 Si 0.729 3.271 22 H -0.195 1.195 23 H -0.203 1.203 24 H -0.186 1.186 25 N -0.253 5.253 26 H 0.102 0.898 27 H 0.057 0.943 28 H 0.061 0.939 29 H 0.095 0.905 30 H 0.083 0.917 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.095 0.905 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.230 0.770 38 H 0.106 0.894 39 H 0.110 0.890 40 H 0.112 0.888 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -8.775 -0.489 12.456 15.245 hybrid contribution -0.042 0.336 -0.633 0.718 sum -8.817 -0.154 11.824 14.750 Atomic orbital electron populations 1.22768 0.81391 1.02597 0.99823 1.87938 1.19380 1.27692 1.94893 1.23015 0.94321 0.84401 0.95072 0.91182 1.22942 0.98843 0.99296 0.97013 1.22273 0.96969 0.98133 0.98598 1.22183 0.97783 0.99106 0.96703 1.22021 0.94526 1.01062 0.94314 0.89277 1.21099 0.87060 0.99374 0.89946 1.44110 1.10317 1.73298 1.09616 1.18530 0.90493 0.89117 0.84685 1.20601 0.97737 1.23735 0.97277 1.20587 0.95923 0.95445 0.93706 1.21525 0.94757 1.17473 1.00303 1.18198 0.92084 0.86426 0.86727 1.19576 0.92324 1.36538 0.98339 0.89948 1.26040 1.00604 0.93986 0.94686 1.70155 1.30448 1.25209 1.07963 0.86390 0.81644 0.78516 0.80576 1.19538 1.20270 1.18627 1.68219 1.20337 1.26297 1.10448 0.89814 0.94326 0.93926 0.90522 0.91700 0.91431 0.91523 0.91367 0.90507 0.93229 0.93195 0.76974 0.89350 0.89035 0.88774 0.91989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.85 101.05 1.10 1.38 16 2 O -0.38 -4.80 10.41 -35.23 -0.37 -5.17 16 3 C 0.09 1.05 2.88 -25.08 -0.07 0.98 16 4 H 0.07 0.77 7.53 -51.93 -0.39 0.37 16 5 C -0.14 -1.42 6.62 -24.74 -0.16 -1.59 16 6 C -0.12 -1.23 6.83 -25.07 -0.17 -1.40 16 7 C -0.12 -1.48 6.13 -25.61 -0.16 -1.63 16 8 C -0.10 -1.34 2.74 -89.50 -0.24 -1.59 16 9 H 0.09 1.30 8.07 -51.93 -0.42 0.88 16 10 C 0.15 2.45 3.91 -4.04 -0.02 2.44 16 11 N -0.74 -15.12 5.46 -60.39 -0.33 -15.45 16 12 C 0.41 10.31 7.65 -155.32 -1.19 9.12 16 13 C -0.37 -8.72 9.34 -38.86 -0.36 -9.09 16 14 C -0.03 -0.77 10.15 -39.39 -0.40 -1.17 16 15 C -0.32 -8.23 9.83 -38.65 -0.38 -8.61 16 16 C 0.29 8.33 6.55 -85.00 -0.56 7.77 16 17 C -0.44 -12.02 9.14 -37.74 -0.34 -12.37 16 18 H 0.08 2.13 7.85 -52.49 -0.41 1.72 16 19 C 0.07 1.87 5.50 -17.35 -0.10 1.77 16 20 N -0.72 -19.32 11.46 55.55 0.64 -18.68 16 21 Si 0.90 19.00 29.56 -169.99 -5.02 13.97 16 22 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 23 H -0.28 -5.71 7.11 56.52 0.40 -5.30 16 24 H -0.26 -5.42 7.11 56.52 0.40 -5.02 16 25 N -0.53 -14.98 7.89 -10.33 -0.08 -15.07 16 26 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.04 0.37 8.11 -51.93 -0.42 -0.05 16 29 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.08 1.07 7.58 -51.93 -0.39 0.67 16 35 H 0.05 0.79 7.92 -51.93 -0.41 0.38 16 36 H 0.05 0.85 7.92 -51.93 -0.41 0.44 16 37 H 0.40 8.12 8.43 -40.82 -0.34 7.78 16 38 H 0.09 1.87 6.68 -52.49 -0.35 1.52 16 39 H 0.09 1.86 8.06 -52.48 -0.42 1.44 16 40 H 0.09 2.27 8.06 -52.49 -0.42 1.84 16 41 H 0.27 6.59 8.29 -40.82 -0.34 6.25 16 LS Contribution 335.69 15.07 5.06 5.06 Total: -1.00 -30.48 335.69 -9.66 -40.14 By element: Atomic # 1 Polarization: 15.65 SS G_CDS: -6.49 Total: 9.16 kcal Atomic # 6 Polarization: -10.91 SS G_CDS: -3.06 Total: -13.96 kcal Atomic # 7 Polarization: -49.42 SS G_CDS: 0.23 Total: -49.20 kcal Atomic # 8 Polarization: -4.80 SS G_CDS: -0.37 Total: -5.17 kcal Atomic # 14 Polarization: 19.00 SS G_CDS: -5.02 Total: 13.97 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -30.48 -9.66 -40.14 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324086121.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.123 kcal (2) G-P(sol) polarization free energy of solvation -30.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds